RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g31470 FvH4_2g31470 |
| malus_domestica | MD08G1066100.v1.1 MD15G1055100.v1.1 |
| prunus_persica | Prupe.1G408300_v2.0.a1 |
| pyrus_communis | pycom08g05480 pycom15g05200 |
| rosa_chinensis | RchiOBHm_Chr4g0385561 RchiOBHm_Chr6g0311331 |
| rosa_laevigata | RLG00000010416 |
| rosa_multiflora | Rmu_co8395139.1_g000001 Rmu_sc0001461.1_g000089 Rmu_sc0002151.1_g000001 Rmu_sc0036231.1_g000001 Rmu_ssc0000472.1_g000017 |
| rosa_roxburghii | Rroxscaffold_1G00014830 Rroxscaffold_2G00123020 Rroxscaffold_5G00346480 Rroxscaffold_7G00157750 |
| rosa_rugosa | Rorug03G0277700 Rorug03G0277800 Rorug03G0337400 Rorug04G0226900 Rorug05G0459000.1 Rorug06G0387300 Rorug06G0387400 Rorug06G0387500 Rorug06G0387600.1 |
| rosa_samantha | Rh1BG126500 Rh6AG502200 Rh6BG397500 Rh6BG397600 Rh6BG512800 Rh6CG518500 Rh6CG518700 Rh6DG504800 |
| rosa_wichuraiana | Rw3G022150 Rw5G025820 Rw6G043740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 1 cut(s) | 223 |
| AgsI | TTSAA | 1 cut(s) | 192 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 128 |
| AjnI | CCWGG | 3 cut(s) | 4, 52, 352 |
| AluBI | AGCT | 2 cut(s) | 101, 137 |
| AluI | AGCT | 2 cut(s) | 101, 137 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 77 |
| AoxI | GGCC | 1 cut(s) | 283 |
| AsuHPI | GGTGA | 2 cut(s) | 59, 212 |
| BbsI | GAAGAC | 2 cut(s) | 200, 245 |
| BccI | CCATC | 2 cut(s) | 197, 242 |
| BceAI | ACGGC | 1 cut(s) | 270 |
| BciT130I | CCWGG | 3 cut(s) | 6, 54, 354 |
| BciVI | GTATCC | 1 cut(s) | 299 |
| BfuI | GTATCC | 1 cut(s) | 299 |
| Bme1390I | CCNGG | 3 cut(s) | 6, 54, 354 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 128 |
| BmrFI | CCNGG | 3 cut(s) | 6, 54, 354 |
| BmsI | GCATC | 1 cut(s) | 13 |
| BpiI | GAAGAC | 2 cut(s) | 200, 245 |
| BpuEI | CTTGAG | 1 cut(s) | 133 |
| BsaJI | CCNNGG | 1 cut(s) | 5 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 223 |
| Bse1I | ACTGG | 1 cut(s) | 212 |
| BseBI | CCWGG | 3 cut(s) | 6, 54, 354 |
| BseDI | CCNNGG | 1 cut(s) | 5 |
| BseGI | GGATG | 1 cut(s) | 253 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 223 |
| BseMII | CTCAG | 1 cut(s) | 116 |
| BseNI | ACTGG | 1 cut(s) | 212 |
| BshFI | GGCC | 1 cut(s) | 285 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 223 |
| BsnI | GGCC | 1 cut(s) | 285 |
| BspANI | GGCC | 1 cut(s) | 285 |
| BspCNI | CTCAG | 1 cut(s) | 115 |
| BsrI | ACTGG | 1 cut(s) | 212 |
| BssECI | CCNNGG | 1 cut(s) | 5 |
| Bst2UI | CCWGG | 3 cut(s) | 6, 54, 354 |
| Bst4CI | ACNGT | 1 cut(s) | 64 |
| Bst6I | CTCTTC | 1 cut(s) | 268 |
| BstC8I | GCNNGC | 2 cut(s) | 139, 321 |
| BstDEI | CTNAG | 1 cut(s) | 102 |
| BstF5I | GGATG | 1 cut(s) | 253 |
| BstNI | CCWGG | 3 cut(s) | 6, 54, 354 |
| BstNSI | RCATGY | 1 cut(s) | 323 |
| BstSCI | CCNGG | 3 cut(s) | 4, 52, 352 |
| BstV2I | GAAGAC | 2 cut(s) | 200, 245 |
| BsuI | GTATCC | 1 cut(s) | 299 |
| BsuRI | GGCC | 1 cut(s) | 285 |
| BtsCI | GGATG | 1 cut(s) | 253 |
| BtsIMutI | CAGTG | 1 cut(s) | 258 |
| Cac8I | GCNNGC | 2 cut(s) | 139, 321 |
| CaiI | CAGNNNCTG | 1 cut(s) | 77 |
| CsiI | ACCWGGT | 1 cut(s) | 52 |
| CviAII | CATG | 3 cut(s) | 44, 125, 320 |
| CviJI | RGCY | 5 cut(s) | 77, 101, 137, 147, 285 |
| CviKI_1 | RGCY | 5 cut(s) | 77, 101, 137, 147, 285 |
| DdeI | CTNAG | 1 cut(s) | 102 |
| DriI | GACNNNNNGTC | 1 cut(s) | 128 |
| Eam1104I | CTCTTC | 1 cut(s) | 268 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 128 |
| EarI | CTCTTC | 1 cut(s) | 268 |
| EcoRII | CCWGG | 3 cut(s) | 4, 52, 352 |
| FaeI | CATG | 3 cut(s) | 47, 128, 323 |
| FaiI | YATR | 8 cut(s) | 15, 45, 126, 183, 232, 267, 321, 342 |
| FatI | CATG | 3 cut(s) | 43, 124, 319 |
| FokI | GGATG | 1 cut(s) | 260 |
| HaeIII | GGCC | 1 cut(s) | 285 |
| Hin1II | CATG | 3 cut(s) | 47, 128, 323 |
| HinfI | GANTC | 1 cut(s) | 227 |
| HphI | GGTGA | 2 cut(s) | 59, 212 |
| Hpy166II | GTNNAC | 1 cut(s) | 50 |
| Hpy188I | TCNGA | 2 cut(s) | 105, 134 |
| Hpy8I | GTNNAC | 1 cut(s) | 50 |
| HpyAV | CCTTC | 1 cut(s) | 198 |
| HpyCH4III | ACNGT | 1 cut(s) | 64 |
| HpyCH4V | TGCA | 2 cut(s) | 319, 344 |
| HpyF3I | CTNAG | 1 cut(s) | 102 |
| Hsp92II | CATG | 3 cut(s) | 47, 128, 323 |
| LmnI | GCTCC | 1 cut(s) | 134 |
| LweI | GCATC | 1 cut(s) | 13 |
| MabI | ACCWGGT | 1 cut(s) | 52 |
| MaeIII | GTNAC | 1 cut(s) | 64 |
| MboII | GAAGA | 3 cut(s) | 200, 245, 285 |
| MmeI | TCCRAC | 2 cut(s) | 110, 112 |
| MnlI | CCTC | 1 cut(s) | 121 |
| MslI | CAYNNNNRTG | 1 cut(s) | 324 |
| MspR9I | CCNGG | 3 cut(s) | 6, 54, 354 |
| MvaI | CCWGG | 3 cut(s) | 6, 54, 354 |
| NlaIII | CATG | 3 cut(s) | 47, 128, 323 |
| NspI | RCATGY | 1 cut(s) | 323 |
| PaeI | GCATGC | 1 cut(s) | 323 |
| PfeI | GAWTC | 1 cut(s) | 227 |
| PfoI | TCCNGGA | 1 cut(s) | 352 |
| Psp6I | CCWGG | 3 cut(s) | 4, 52, 352 |
| PspGI | CCWGG | 3 cut(s) | 4, 52, 352 |
| PstNI | CAGNNNCTG | 1 cut(s) | 77 |
| RseI | CAYNNNNRTG | 1 cut(s) | 324 |
| ScrFI | CCNGG | 3 cut(s) | 6, 54, 354 |
| SetI | ASST | 6 cut(s) | 55, 103, 132, 139, 182, 341 |
| SexAI | ACCWGGT | 1 cut(s) | 52 |
| SfaNI | GCATC | 1 cut(s) | 13 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 324 |
| SmlI | CTYRAG | 1 cut(s) | 148 |
| SmoI | CTYRAG | 1 cut(s) | 148 |
| SphI | GCATGC | 1 cut(s) | 323 |
| StyD4I | CCNGG | 3 cut(s) | 4, 52, 352 |
| TaaI | ACNGT | 1 cut(s) | 64 |
| TfiI | GAWTC | 1 cut(s) | 227 |
| TscAI | CASTG | 1 cut(s) | 265 |
| TspDTI | ATGAA | 1 cut(s) | 32 |
| TspRI | CASTG | 1 cut(s) | 265 |
| XceI | RCATGY | 1 cut(s) | 323 |