RchiOBHm_Chr6g0311331

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002860
Physical Location & Seq
Reverse (-)
68310222 .. 68312916
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27998

Sequence Viewer

Length: 867 bp
ATGGCGGATCCCTACCATAGATACGCTGCTCCGCCGGAACGAGGTAGTGTAGCAAATTCCAATTTTCCTGGTTACTTATCATCCGAAGCACCATCGTTACTATCGAATCACACTTTTGCCCCTACTGATTTGAGAAGCTATTCTTCGGATTTTCGGCTGAGAGATAAATCGTCGTGGTCTGTGCCGTATGGTGTAGATGATAGTGTGGGTAGTAGAGTTCGTTCTGATTCGGGTGTTGGGGTGACAGCAGGGTCTAGCCTATATGATCCTTTGGAAGATACTTATCGAAACCAGAGACAGGATATTGCGATGAGGTCAATGACGCCTGGGGTTTATGGTGTAGATGCTGTGAGTGTTAGTGTTCGTGGTGAACCTGGTCTTGCTGTAATAGCGGGGGCTGGTTTTCCATCTCCTTTACAAGCTCAGACTTTACTAAACCAAAGACATGCCACTGGAGTGGGCATTGGCTCGAGTGTTTCTACTGACATTAGTAGAGAAAGGTCTGTGCCTTCAAGGAGTGGTGATGGTCTCCCAGTCCTGAAAGGGGAATCAAACATTTTGTTTGTGGATGGACTTCCCACTGACTGTACCAGAAGAGAAGTAGGCCATCTATTTCGTCCATTCATTGGCTTTAAAGAAATCAAAGTAGTTCACAAGGAGCCTAGACGTAGTGGAGATAAGGCAATGGTTTTATGCTTTGTGGAGTTTGTGGATCCAAAGTGTGCTTTGACTGCTATGGAAGCTCTACAAGGTTACAAGTTTGATGACAAGAAACCTGATTCCCTTCCATTGAGGATCCACTTTGCACATTTTCCTTTCCGTCTACCATCTGATTCCGATCAGAAACGAAGTGGAATCCGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

288

Amino Acids

31.45

Weight (kDa)

8.39

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 187 - 258 6.8e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 626
AccI GTMKAC 1 cut(s) 823
AciI CCGC 3 cut(s) 5, 32, 392
AclWI GGATC 7 cut(s) 2, 15, 260, 707, 720, 790, 803
AcsI RAATTY 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 323
AfaI GTAC 1 cut(s) 589
AfiI CCNNNNNNNGG 4 cut(s) 41, 298, 544, 626
AgsI TTSAA 1 cut(s) 513
AjnI CCWGG 3 cut(s) 67, 325, 373
AleI CACNNNNGTG 1 cut(s) 455
AluBI AGCT 3 cut(s) 138, 422, 743
AluI AGCT 3 cut(s) 138, 422, 743
Alw26I GTCTC 2 cut(s) 289, 533
AlwI GGATC 7 cut(s) 2, 15, 260, 707, 720, 790, 803
Ama87I CYCGRG 1 cut(s) 469
AoxI GGCC 1 cut(s) 604
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 55
Asp700I GAANNNNTTC 1 cut(s) 139
AsuHPI GGTGA 3 cut(s) 253, 380, 533
AvaI CYCGRG 1 cut(s) 469
BamHI GGATCC 3 cut(s) 7, 712, 795
BbvI GCAGC 1 cut(s) 13
BccI CCATC 6 cut(s) 100, 415, 518, 563, 615, 835
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 3 cut(s) 69, 327, 375
BcoDI GTCTC 2 cut(s) 289, 533
BfaI CTAG 2 cut(s) 255, 663
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 3 cut(s) 69, 327, 375
BmeT110I CYCGRG 1 cut(s) 469
BmiI GGNNCC 4 cut(s) 9, 660, 714, 797
BmrFI CCNGG 3 cut(s) 69, 327, 375
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 527
BpmI CTGGAG 1 cut(s) 474
BsaBI GATNNNNATC 2 cut(s) 282, 837
BsaHI GRCGYC 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 533
BsaJI CCNNGG 1 cut(s) 326
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 298, 544, 626
Bse1I ACTGG 2 cut(s) 457, 533
Bse3DI GCAATG 1 cut(s) 690
Bse8I GATNNNNATC 2 cut(s) 282, 837
BseBI CCWGG 3 cut(s) 69, 327, 375
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 2 cut(s) 80, 574
BseJI GATNNNNATC 2 cut(s) 282, 837
BseLI CCNNNNNNNGG 4 cut(s) 41, 298, 544, 626
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 2 cut(s) 149, 437
BseNI ACTGG 2 cut(s) 457, 533
BseXI GCAGC 1 cut(s) 13
BshFI GGCC 1 cut(s) 606
BsiHKCI CYCGRG 1 cut(s) 469
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 4 cut(s) 41, 298, 544, 626
BsmAI GTCTC 2 cut(s) 289, 533
BsnI GGCC 1 cut(s) 606
Bso31I GGTCTC 1 cut(s) 533
BsoBI CYCGRG 1 cut(s) 469
Bsp143I GATC 5 cut(s) 7, 265, 712, 795, 838
BspACI CCGC 3 cut(s) 5, 32, 392
BspANI GGCC 1 cut(s) 606
BspCNI CTCAG 2 cut(s) 150, 436
BspLI GGNNCC 4 cut(s) 9, 660, 714, 797
BspPI GGATC 7 cut(s) 2, 15, 260, 707, 720, 790, 803
BspTNI GGTCTC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 690
BsrI ACTGG 2 cut(s) 457, 533
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 5 cut(s) 7, 265, 712, 795, 838
BssNI GRCGYC 1 cut(s) 323
Bst2UI CCWGG 3 cut(s) 69, 327, 375
Bst4CI ACNGT 1 cut(s) 587
Bst6I CTCTTC 1 cut(s) 589
BstACI GRCGYC 1 cut(s) 323
BstDEI CTNAG 2 cut(s) 158, 423
BstF5I GGATG 2 cut(s) 80, 574
BstKTI GATC 5 cut(s) 10, 268, 715, 798, 841
BstMAI GTCTC 2 cut(s) 289, 533
BstMBI GATC 5 cut(s) 7, 265, 712, 795, 838
BstMWI GCNNNNNNNGC 3 cut(s) 389, 731, 740
BstNI CCWGG 3 cut(s) 69, 327, 375
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 3 cut(s) 67, 325, 373
BstV1I GCAGC 1 cut(s) 13
BstX2I RGATCY 3 cut(s) 7, 712, 795
BstXI CCANNNNNNTGG 1 cut(s) 457
BstYI RGATCY 3 cut(s) 7, 712, 795
BsuRI GGCC 1 cut(s) 606
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 2 cut(s) 80, 574
BtsIMutI CAGTG 3 cut(s) 450, 579, 862
CseI GACGC 1 cut(s) 331
CsiI ACCWGGT 1 cut(s) 373
Csp6I GTAC 1 cut(s) 588
CviAII CATG 1 cut(s) 446
CviQI GTAC 1 cut(s) 588
DdeI CTNAG 2 cut(s) 158, 423
DpnI GATC 5 cut(s) 9, 267, 714, 797, 840
DpnII GATC 5 cut(s) 7, 265, 712, 795, 838
DraI TTTAAA 1 cut(s) 634
DrdI GACNNNNNNGTC 1 cut(s) 250
DseDI GACNNNNNNGTC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 589
EciI GGCGGA 2 cut(s) 20, 21
Eco31I GGTCTC 1 cut(s) 533
Eco88I CYCGRG 1 cut(s) 469
EcoRII CCWGG 3 cut(s) 67, 325, 373
FaeI CATG 1 cut(s) 449
FaiI YATR 8 cut(s) 18, 189, 262, 264, 336, 447, 694, 737
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FatI CATG 1 cut(s) 445
FauI CCCGC 1 cut(s) 385
FblI GTMKAC 1 cut(s) 823
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 2 cut(s) 67, 581
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 2 cut(s) 255, 663
GluI GCNGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 1 cut(s) 606
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 331
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 1 cut(s) 449
HinfI GANTC 6 cut(s) 106, 227, 548, 779, 833, 855
HpaII CCGG 1 cut(s) 35
HphI GGTGA 3 cut(s) 253, 380, 533
Hpy166II GTNNAC 3 cut(s) 371, 652, 824
Hpy188I TCNGA 8 cut(s) 85, 148, 226, 426, 832, 838, 843, 860
Hpy188III TCNNGA 1 cut(s) 538
Hpy8I GTNNAC 3 cut(s) 371, 652, 824
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 2 cut(s) 519, 794
HpyCH4III ACNGT 1 cut(s) 587
HpyCH4IV ACGT 1 cut(s) 667
HpyCH4V TGCA 1 cut(s) 806
HpyF10VI GCNNNNNNNGC 3 cut(s) 389, 731, 740
HpyF3I CTNAG 2 cut(s) 158, 423
HpySE526I ACGT 1 cut(s) 667
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 1 cut(s) 449
Kzo9I GATC 5 cut(s) 7, 265, 712, 795, 838
LmnI GCTCC 2 cut(s) 34, 658
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 1 cut(s) 334
MabI ACCWGGT 1 cut(s) 373
MaeI CTAG 2 cut(s) 255, 663
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 4 cut(s) 71, 96, 241, 752
MalI GATC 5 cut(s) 9, 267, 714, 797, 840
MboI GATC 5 cut(s) 7, 265, 712, 795, 838
MboII GAAGA 3 cut(s) 135, 287, 606
MflI RGATCY 3 cut(s) 7, 712, 795
MluCI AATT 2 cut(s) 55, 61
MnlI CCTC 3 cut(s) 35, 306, 786
MroXI GAANNNNTTC 1 cut(s) 139
MseI TTAA 1 cut(s) 633
MslI CAYNNNNRTG 1 cut(s) 455
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 3 cut(s) 69, 327, 375
MvaI CCWGG 3 cut(s) 69, 327, 375
MwoI GCNNNNNNNGC 3 cut(s) 389, 731, 740
NdeII GATC 5 cut(s) 7, 265, 712, 795, 838
NlaIII CATG 1 cut(s) 449
NlaIV GGNNCC 4 cut(s) 9, 660, 714, 797
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 1 cut(s) 449
OliI CACNNNNGTG 1 cut(s) 455
PaeR7I CTCGAG 1 cut(s) 469
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 6 cut(s) 106, 227, 548, 779, 833, 855
PflMI CCANNNNNTGG 1 cut(s) 626
PkrI GCNGC 1 cut(s) 28
Psp6I CCWGG 3 cut(s) 67, 325, 373
PspGI CCWGG 3 cut(s) 67, 325, 373
PspN4I GGNNCC 4 cut(s) 9, 660, 714, 797
PspXI VCTCGAGB 1 cut(s) 469
PsrI GAACNNNNNNTAC 2 cut(s) 205, 237
PsuI RGATCY 3 cut(s) 7, 712, 795
RsaI GTAC 1 cut(s) 589
RsaNI GTAC 1 cut(s) 588
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 5 cut(s) 7, 265, 712, 795, 838
ScrFI CCNGG 3 cut(s) 69, 327, 375
SexAI ACCWGGT 1 cut(s) 373
SfaNI GCATC 1 cut(s) 334
Sfr274I CTCGAG 1 cut(s) 469
SlaI CTCGAG 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 2 cut(s) 55, 61
SsiI CCGC 3 cut(s) 5, 32, 392
SspMI CTAG 2 cut(s) 255, 663
StyD4I CCNGG 3 cut(s) 67, 325, 373
TaaI ACNGT 1 cut(s) 587
TaiI ACGT 1 cut(s) 670
TaqI TCGA 3 cut(s) 104, 286, 470
TasI AATT 2 cut(s) 55, 61
TfiI GAWTC 6 cut(s) 106, 227, 548, 779, 833, 855
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 2 cut(s) 457, 586
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 613
TspGWI ACGGA 1 cut(s) 809
TspRI CASTG 2 cut(s) 457, 586
Van91I CCANNNNNTGG 1 cut(s) 626
XapI RAATTY 1 cut(s) 55
XceI RCATGY 1 cut(s) 449
XhoI CTCGAG 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 823
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 2 cut(s) 255, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.