FvH4_4g05721

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003693
Physical Location & Seq
Forward (+)
5089448 .. 5089834
387 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05721.t1

Sequence Viewer

Length: 288 bp
ATGTTTAGCGGTGCACAAACTCTGGCCATGAACGATTCTGATCGAGCAAAGATTAATGGAATCAGTGTCAAAGACATGGCAGCTTATATTGCCTTAGCCCTACAAACGTCATCTTCAATGGTGCAACAACTTGTCATGAGAACGGATGCCTCCGAGATCTCTATGTGGGGAAGAGTGAAAGATGCTGAGCGGAAAGCCGAAAAGAATGCCATCATGGTTGAAGGAGTTGCGCAAGGCTCTCGAAAACAAGTGTCAGGTGTTGGAAACTTGCGACAAAGAGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.34

Weight (kDa)

9.59

Isoelectric Point (pI)

25.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 231
AccBSI CCGCTC 1 cut(s) 190
AciI CCGC 2 cut(s) 9, 190
AcoI YGGCCR 1 cut(s) 24
AgsI TTSAA 2 cut(s) 117, 221
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw21I GWGCWC 1 cut(s) 16
Alw44I GTGCAC 1 cut(s) 12
AoxI GGCC 1 cut(s) 24
ApaLI GTGCAC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 80
AseI ATTAAT 1 cut(s) 54
AspLEI GCGC 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 16
BalI TGGCCA 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 92
BccI CCATC 1 cut(s) 218
BcgI CGANNNNNNTGC 4 cut(s) 188, 221, 222, 255
BglII AGATCT 1 cut(s) 156
BisI GCNGC 1 cut(s) 81
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 82
BmsI GCATC 2 cut(s) 136, 172
Bpu10I CCTNAGC 1 cut(s) 94
Bpu1102I GCTNAGC 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 39
BseGI GGATG 1 cut(s) 151
BseJI GATNNNNATC 1 cut(s) 39
BseMII CTCAG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 1 cut(s) 92
BshFI GGCC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 16
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 2 cut(s) 40, 156
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 2 cut(s) 9, 190
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 178
BspHI TCATGA 1 cut(s) 135
BsrBI CCGCTC 1 cut(s) 190
BssMI GATC 2 cut(s) 40, 156
Bst6I CTCTTC 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 94, 186
BstF5I GGATG 1 cut(s) 151
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 2 cut(s) 43, 159
BstMBI GATC 2 cut(s) 40, 156
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstSLI GKGCMC 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 70
CciI TCATGA 1 cut(s) 135
CfoI GCGC 1 cut(s) 232
CviAII CATG 4 cut(s) 28, 76, 136, 214
CviJI RGCY 5 cut(s) 26, 83, 98, 197, 237
CviKI_1 RGCY 5 cut(s) 26, 83, 98, 197, 237
DdeI CTNAG 2 cut(s) 94, 186
DpnI GATC 2 cut(s) 42, 158
DpnII GATC 2 cut(s) 40, 156
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
FaeI CATG 4 cut(s) 31, 79, 139, 217
FaiI YATR 7 cut(s) 29, 77, 87, 137, 164, 215, 284
FatI CATG 4 cut(s) 27, 75, 135, 213
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 81
FspI TGCGCA 1 cut(s) 231
GlaI GCGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 26
HhaI GCGC 1 cut(s) 232
Hin1II CATG 4 cut(s) 31, 79, 139, 217
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 2 cut(s) 35, 60
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 40, 154
Hpy188III TCNNGA 2 cut(s) 136, 240
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 14, 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 2 cut(s) 94, 186
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 4 cut(s) 31, 79, 139, 217
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 2 cut(s) 40, 156
LpnPI CCDG 2 cut(s) 8, 240
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 2 cut(s) 136, 172
MaeII ACGT 1 cut(s) 107
MalI GATC 2 cut(s) 42, 158
MbiI CCGCTC 1 cut(s) 190
MboI GATC 2 cut(s) 40, 156
MboII GAAGA 2 cut(s) 105, 183
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 16
MlsI TGGCCA 1 cut(s) 26
MluNI TGGCCA 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 1 cut(s) 160
Mox20I TGGCCA 1 cut(s) 26
MscI TGGCCA 1 cut(s) 26
MseI TTAA 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 2 cut(s) 40, 156
NlaIII CATG 4 cut(s) 31, 79, 139, 217
NsbI TGCGCA 1 cut(s) 231
PagI TCATGA 1 cut(s) 135
PctI GAATGC 1 cut(s) 211
PfeI GAWTC 2 cut(s) 35, 60
PkrI GCNGC 1 cut(s) 82
PshBI ATTAAT 1 cut(s) 54
PsuI RGATCY 1 cut(s) 156
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 40, 156
SduI GDGCHC 1 cut(s) 16
SetI ASST 3 cut(s) 85, 110, 259
SfaNI GCATC 2 cut(s) 136, 172
SsiI CCGC 2 cut(s) 9, 190
TaiI ACGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 43, 241
TfiI GAWTC 2 cut(s) 35, 60
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 1 cut(s) 70
VneI GTGCAC 1 cut(s) 12
VspI ATTAAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.