RLG00000022774

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003693
Physical Location & Seq
Reverse (-)
11990910 .. 11992065
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022774

Sequence Viewer

Length: 384 bp
ATGGACGAGGATTCGGGAGCCGAACTCACCGTTTGGGTGCCTAAAGAGTTTCAGCTTAAAAGGACAAGAGATAATATCGTTGACTCAGATTGGGTATCGATTTGCGCAATTCCTACCGCCCCCGACATTTTTTCTGGTAAAGGTATTCCGAGTGATGCTCTTCAAGCCTCAAGACCGAAGAGGAGTTGGAGAAAAAAAGAAAGTGTTCGGATGGACATCAGGTGTGTTAAGTTGCCCGCACCACAAGGAAGGAAATCCTCCAAGAAGCTGAAACTAACTGAGGGCAATACTGGAAGCGCTAGTGGCGGGTTTGAGAATGTTCGTAGTGAGGTTGACTCTAGTCGCGCCGATAAGGAAGCTTTGGGATCGCTCTCCTTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.92

Weight (kDa)

9.23

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 37
AccII CGCG 1 cut(s) 345
AciI CCGC 3 cut(s) 117, 237, 306
AclWI GGATC 1 cut(s) 373
AfeI AGCGCT 1 cut(s) 298
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 3 cut(s) 55, 268, 359
AluI AGCT 3 cut(s) 55, 268, 359
AlwI GGATC 1 cut(s) 373
Aor51HI AGCGCT 1 cut(s) 298
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 3 cut(s) 107, 299, 347
AsuHPI GGTGA 1 cut(s) 19
BanI GGYRCC 1 cut(s) 37
BccI CCATC 1 cut(s) 205
BfaI CTAG 2 cut(s) 300, 339
BfoI RGCGCY 1 cut(s) 300
BmiI GGNNCC 2 cut(s) 19, 39
BmsI GCATC 1 cut(s) 145
BoxI GACNNNNGTC 1 cut(s) 339
BplI GAGNNNNNCTC 6 cut(s) 9, 41, 142, 174, 320, 352
BpuEI CTTGAG 1 cut(s) 154
Bsa29I ATCGAT 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 295
Bse8I GATNNNNATC 1 cut(s) 215
BseCI ATCGAT 1 cut(s) 98
BseGI GGATG 1 cut(s) 216
BseJI GATNNNNATC 1 cut(s) 215
BseMII CTCAG 2 cut(s) 99, 270
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 345
BshNI GGYRCC 1 cut(s) 37
BshVI ATCGAT 1 cut(s) 98
Bsp143I GATC 1 cut(s) 365
BspACI CCGC 3 cut(s) 117, 237, 306
BspCNI CTCAG 2 cut(s) 98, 271
BspDI ATCGAT 1 cut(s) 98
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 2 cut(s) 19, 39
BspPI GGATC 1 cut(s) 373
BspQI GCTCTTC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 295
BssMI GATC 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 2 cut(s) 165, 173
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 85, 279
BstF5I GGATG 1 cut(s) 216
BstFNI CGCG 1 cut(s) 345
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 3 cut(s) 107, 299, 347
BstKTI GATC 1 cut(s) 368
BstMBI GATC 1 cut(s) 365
BstMWI GCNNNNNNNGC 3 cut(s) 164, 303, 376
BstPAI GACNNNNGTC 1 cut(s) 339
BstUI CGCG 1 cut(s) 345
Bsu15I ATCGAT 1 cut(s) 98
BsuTUI ATCGAT 1 cut(s) 98
BtsCI GGATG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 237
CfoI GCGC 3 cut(s) 107, 299, 347
ClaI ATCGAT 1 cut(s) 98
CviJI RGCY 5 cut(s) 20, 55, 167, 268, 359
CviKI_1 RGCY 5 cut(s) 20, 55, 167, 268, 359
DdeI CTNAG 2 cut(s) 85, 279
DpnI GATC 1 cut(s) 367
DpnII GATC 1 cut(s) 365
Eam1104I CTCTTC 2 cut(s) 165, 173
EarI CTCTTC 2 cut(s) 165, 173
Eco47III AGCGCT 1 cut(s) 298
FauI CCCGC 2 cut(s) 244, 299
FokI GGATG 1 cut(s) 223
FspBI CTAG 2 cut(s) 300, 339
FspI TGCGCA 1 cut(s) 106
GlaI GCGC 3 cut(s) 106, 298, 346
HaeII RGCGCY 1 cut(s) 300
HhaI GCGC 3 cut(s) 107, 299, 347
Hin6I GCGC 3 cut(s) 105, 297, 345
HinP1I GCGC 3 cut(s) 105, 297, 345
HincII GTYRAC 2 cut(s) 82, 334
HindII GTYRAC 2 cut(s) 82, 334
HindIII AAGCTT 1 cut(s) 357
HinfI GANTC 3 cut(s) 11, 83, 335
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 82, 334
Hpy188I TCNGA 3 cut(s) 88, 150, 210
Hpy188III TCNNGA 2 cut(s) 15, 171
Hpy8I GTNNAC 2 cut(s) 82, 334
HpyAV CCTTC 1 cut(s) 243
HpyCH4III ACNGT 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 303, 376
HpyF3I CTNAG 2 cut(s) 85, 279
HspAI GCGC 3 cut(s) 105, 297, 345
Kzo9I GATC 1 cut(s) 365
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 3 cut(s) 120, 205, 276
LweI GCATC 1 cut(s) 145
MaeI CTAG 2 cut(s) 300, 339
MalI GATC 1 cut(s) 367
MboI GATC 1 cut(s) 365
MboII GAAGA 2 cut(s) 152, 190
MluCI AATT 1 cut(s) 108
MlyI GAGTC 2 cut(s) 77, 329
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 5 cut(s) 174, 178, 268, 274, 322
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 3 cut(s) 57, 228, 382
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 3 cut(s) 164, 303, 376
NdeII GATC 1 cut(s) 365
NlaIV GGNNCC 2 cut(s) 19, 39
NsbI TGCGCA 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 11
PleI GAGTC 2 cut(s) 77, 329
PpsI GAGTC 2 cut(s) 77, 329
PshAI GACNNNNGTC 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 19, 39
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 3 cut(s) 57, 228, 382
Sau3AI GATC 1 cut(s) 365
SchI GAGTC 2 cut(s) 77, 329
SetI ASST 6 cut(s) 57, 145, 224, 270, 333, 361
SfaNI GCATC 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
Sse9I AATT 1 cut(s) 108
SsiI CCGC 3 cut(s) 117, 237, 306
SspMI CTAG 2 cut(s) 300, 339
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 98
TaqII GACCGA 1 cut(s) 190
TasI AATT 1 cut(s) 108
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 3 cut(s) 57, 228, 382
Tru9I TTAA 3 cut(s) 57, 228, 382
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 2 cut(s) 300, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.