Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003693

Physical Location & Seq

Genomic Coordinates Forward (+)

50907709 .. 50928009

Gene Structure 20301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG346000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCTCCTCCGCTGTCGCCGTCAATCACCCTCCGGCCACCACTACCCGCCGCAACGCCTCCTACAACCGAAAGCAGAAGTCCTTGAGCCTCCTCTGCTCCAATTTCCTCAACCTCTACAACCTCGACAACTTAATTCAATTGTTACTTCTACTTCATATCTGTAGGTTTCTATCAACTCTTTACCGAGAAAGCTCCAAGGGAGGCGATATGGACATCAGGTGTGTTAAGTTTCCCGCACCGCAAGTGAGACAAACAAAAAAACAAAAATGGCCTAATGACGGCGCTGAAACCGCTCAAGCAGACTCTGAATCTACACGCGGTAACAAAGTACAACTGCGGCAGTCTCCGCCGCTTCGAGTCAATCCCCAGCATTCACCATGCAGGGCAAACAGCGGCCCCCTAATAGTTTCGGGCGCCAACCTTGACCCTCATCAAATCGGTTCACCGTTATCCTCGAAGCCTCATTTACAACTAACTTTTCCTAAAGAAAATGACTCGTACGTGTTGGAGGGAGACCAAATTGCCTTCGATAAAGAGGCATGCTTGGCTGTGGCCCAAGCTCTAGCCTTGAATCATTTTGATCACGATAAGCTTTTGCATCTGAGTTTAAGGGATCTCGCTGCACAACTTGGCATATCCTTGCAGTCGCAATTTCACTCGCCAGTTTGTTCTTCAGCTCGCCAAGTTCTTTACGTTTGTCTCTTGTCTCTCGAGAGGAAATCAAAAGAGGTTGAAGCCAAACGTAAAGAACTTGGCGAGCTGAAGAACAAACTGGCGAGTGAAATTGCTATCAGGACAAGGGAGTTTGAGGTGAACCAGAATGAAATTACTAAGTCTTCCTGCAAGTATTTGCGTCTGGGATGGGTTCAAGGCCAGCAGAATGAGGAGGACAAGATTTTCGTTGGACCTGATTCATTTGACGCGGAGGTGGGGTTGCTCTCTTCAGATTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

35.59

Weight (kDa)

8.55

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05721
rosa_chinensis	RchiOBHm_Chr1g0343511
rosa_laevigata	RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661
rosa_multiflora	Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004
rosa_roxburghii	Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460
rosa_samantha	Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccBSI	CCGCTC	1 cut(s)	296
AccII	CGCG	2 cut(s)	321, 926
AclWI	GGATC	1 cut(s)	624
AcoI	YGGCCR	1 cut(s)	36
AcuI	CTGAAG	3 cut(s)	660, 785, 930
AcyI	GRCGYC	1 cut(s)	417
AfaI	GTAC	2 cut(s)	333, 503
AfiI	CCNNNNNNNGG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	4 cut(s)	140, 574, 737, 872
AluBI	AGCT	5 cut(s)	195, 563, 595, 680, 763
AluI	AGCT	5 cut(s)	195, 563, 595, 680, 763
Alw26I	GTCTC	5 cut(s)	244, 351, 510, 707, 714
AlwI	GGATC	1 cut(s)	624
AlwNI	CAGNNNCTG	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	713
AoxI	GGCC	6 cut(s)	3, 36, 272, 397, 555, 874
ApeKI	GCWGC	1 cut(s)	623
ArsI	GACNNNNNNTTYG	2 cut(s)	884, 916
AspLEI	GCGC	2 cut(s)	287, 419
AspS9I	GGNCC	3 cut(s)	398, 556, 908
AsuHPI	GGTGA	4 cut(s)	20, 369, 438, 826
AvaI	CYCGRG	1 cut(s)	713
AvaII	GGWCC	1 cut(s)	908
BanI	GGYRCC	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	831
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	1 cut(s)	858
BceAI	ACGGC	2 cut(s)	5, 298
BclI	TGATCA	1 cut(s)	583
BcoDI	GTCTC	5 cut(s)	244, 351, 510, 707, 714
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	163
BfoI	RGCGCY	2 cut(s)	288, 420
BisI	GCNGC	5 cut(s)	52, 341, 353, 397, 624
BlsI	GCNGC	5 cut(s)	53, 342, 354, 398, 625
Bme18I	GGWCC	1 cut(s)	908
BmeT110I	CYCGRG	1 cut(s)	713
BmgT120I	GGNCC	3 cut(s)	398, 556, 908
BmiI	GGNNCC	2 cut(s)	400, 418
BmsI	GCATC	1 cut(s)	610
BpiI	GAAGAC	1 cut(s)	831
BpuEI	CTTGAG	2 cut(s)	106, 282
BsaAI	YACGTR	1 cut(s)	505
BsaHI	GRCGYC	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	920, 950
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	665, 780
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	869
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	596
BseNI	ACTGG	2 cut(s)	665, 780
BseRI	GAGGAG	2 cut(s)	83, 902
BseXI	GCAGC	1 cut(s)	610
BseYI	CCCAGC	1 cut(s)	369
BsgI	GTGCAG	1 cut(s)	609
Bsh1236I	CGCG	2 cut(s)	321, 926
BshFI	GGCC	6 cut(s)	5, 38, 274, 399, 557, 876
BshNI	GGYRCC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	713
BsiSI	CCGG	1 cut(s)	35
BsiWI	CGTACG	1 cut(s)	501
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	5 cut(s)	244, 351, 510, 707, 714
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	6 cut(s)	5, 38, 274, 399, 557, 876
Bso31I	GGTCTC	1 cut(s)	510
BsoBI	CYCGRG	1 cut(s)	713
Bsp143I	GATC	2 cut(s)	583, 616
BspANI	GGCC	6 cut(s)	5, 38, 274, 399, 557, 876
BspCNI	CTCAG	1 cut(s)	597
BspFNI	CGCG	2 cut(s)	321, 926
BspLI	GGNNCC	2 cut(s)	400, 418
BspPI	GGATC	1 cut(s)	624
BspT107I	GGYRCC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	510
BsrBI	CCGCTC	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	665, 780
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	583, 616
BssNI	GRCGYC	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	450
Bst6I	CTCTTC	1 cut(s)	949
BstACI	GRCGYC	1 cut(s)	417
BstBAI	YACGTR	1 cut(s)	505
BstC8I	GCNNGC	4 cut(s)	544, 682, 761, 878
BstDEI	CTNAG	2 cut(s)	605, 834
BstF5I	GGATG	1 cut(s)	869
BstFNI	CGCG	2 cut(s)	321, 926
BstH2I	RGCGCY	2 cut(s)	288, 420
BstHHI	GCGC	2 cut(s)	287, 419
BstKTI	GATC	2 cut(s)	586, 619
BstMAI	GTCTC	5 cut(s)	244, 351, 510, 707, 714
BstMBI	GATC	2 cut(s)	583, 616
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 96, 293, 349, 548
BstNSI	RCATGY	1 cut(s)	546
BstSFI	CTRYAG	1 cut(s)	163
BstUI	CGCG	2 cut(s)	321, 926
BstV1I	GCAGC	1 cut(s)	610
BstV2I	GAAGAC	1 cut(s)	831
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	6 cut(s)	5, 38, 274, 399, 557, 876
BtsCI	GGATG	1 cut(s)	869
Cac8I	GCNNGC	4 cut(s)	544, 682, 761, 878
CaiI	CAGNNNCTG	1 cut(s)	308
CfoI	GCGC	2 cut(s)	287, 419
Cfr13I	GGNCC	3 cut(s)	398, 556, 908
CseI	GACGC	2 cut(s)	845, 932
Csp6I	GTAC	2 cut(s)	332, 502
CviAII	CATG	2 cut(s)	381, 543
CviQI	GTAC	2 cut(s)	332, 502
DdeI	CTNAG	2 cut(s)	605, 834
DinI	GGCGCC	1 cut(s)	418
DpnI	GATC	2 cut(s)	585, 618
DpnII	GATC	2 cut(s)	583, 616
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	949
EarI	CTCTTC	1 cut(s)	949
EciI	GGCGGA	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	198
Eco31I	GGTCTC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	908
Eco57I	CTGAAG	3 cut(s)	660, 785, 930
Eco88I	CYCGRG	1 cut(s)	713
EcoT14I	CCWWGG	1 cut(s)	198
EgeI	GGCGCC	1 cut(s)	418
EheI	GGCGCC	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	2 cut(s)	384, 546
FaiI	YATR	6 cut(s)	159, 212, 382, 544, 638, 954
FatI	CATG	2 cut(s)	380, 542
FauI	CCCGC	2 cut(s)	56, 244
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	5 cut(s)	52, 341, 353, 397, 624
FokI	GGATG	1 cut(s)	876
Fsp4HI	GCNGC	5 cut(s)	52, 341, 353, 397, 624
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	2 cut(s)	286, 418
GluI	GCNGC	5 cut(s)	52, 341, 353, 397, 624
GsaI	CCCAGC	1 cut(s)	373
HaeII	RGCGCY	2 cut(s)	288, 420
HaeIII	GGCC	6 cut(s)	5, 38, 274, 399, 557, 876
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	2 cut(s)	845, 932
HhaI	GCGC	2 cut(s)	287, 419
Hin1I	GRCGYC	1 cut(s)	417
Hin1II	CATG	2 cut(s)	384, 546
Hin6I	GCGC	2 cut(s)	285, 417
HinP1I	GCGC	2 cut(s)	285, 417
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	6 cut(s)	305, 311, 360, 497, 574, 914
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	4 cut(s)	20, 369, 438, 826
Hpy166II	GTNNAC	2 cut(s)	446, 817
Hpy188I	TCNGA	3 cut(s)	310, 606, 949
Hpy188III	TCNNGA	4 cut(s)	587, 713, 715, 796
Hpy8I	GTNNAC	2 cut(s)	446, 817
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	3 cut(s)	504, 696, 745
HpyCH4V	TGCA	5 cut(s)	384, 601, 626, 646, 846
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 96, 293, 349, 548
HpyF3I	CTNAG	2 cut(s)	605, 834
HpySE526I	ACGT	3 cut(s)	504, 696, 745
Hsp92I	GRCGYC	1 cut(s)	417
Hsp92II	CATG	2 cut(s)	384, 546
HspAI	GCGC	2 cut(s)	285, 417
KasI	GGCGCC	1 cut(s)	416
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	2 cut(s)	583, 616
LmnI	GCTCC	2 cut(s)	104, 200
Lsp1109I	GCAGC	1 cut(s)	610
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	3 cut(s)	504, 696, 745
MaeIII	GTNAC	2 cut(s)	144, 323
MalI	GATC	2 cut(s)	585, 618
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	2 cut(s)	583, 616
MboII	GAAGA	4 cut(s)	666, 778, 831, 936
MfeI	CAATTG	1 cut(s)	140
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	7 cut(s)	103, 135, 140, 522, 653, 786, 828
Mly113I	GGCGCC	1 cut(s)	417
MlyI	GAGTC	3 cut(s)	299, 369, 491
MmeI	TCCRAC	2 cut(s)	489, 886
MseI	TTAA	3 cut(s)	134, 228, 611
MspA1I	CMGCKG	2 cut(s)	14, 396
MspI	CCGG	1 cut(s)	35
MunI	CAATTG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	373
MvnI	CGCG	2 cut(s)	321, 926
MwoI	GCNNNNNNNGC	5 cut(s)	11, 96, 293, 349, 548
NarI	GGCGCC	1 cut(s)	417
NdeII	GATC	2 cut(s)	583, 616
NlaIII	CATG	2 cut(s)	384, 546
NlaIV	GGNNCC	2 cut(s)	400, 418
NspI	RCATGY	1 cut(s)	546
PaeI	GCATGC	1 cut(s)	546
PaeR7I	CTCGAG	1 cut(s)	713
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	3 cut(s)	311, 574, 914
Pfl23II	CGTACG	1 cut(s)	501
PkrI	GCNGC	5 cut(s)	53, 342, 354, 398, 625
PleI	GAGTC	3 cut(s)	299, 368, 491
PluTI	GGCGCC	1 cut(s)	420
PpsI	GAGTC	3 cut(s)	299, 368, 491
Ppu21I	YACGTR	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	369
PspLI	CGTACG	1 cut(s)	501
PspN4I	GGNNCC	2 cut(s)	400, 418
PspPI	GGNCC	3 cut(s)	398, 556, 908
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	2 cut(s)	333, 503
RsaNI	GTAC	2 cut(s)	332, 502
SaqAI	TTAA	3 cut(s)	134, 228, 611
SatI	GCNGC	5 cut(s)	52, 341, 353, 397, 624
Sau3AI	GATC	2 cut(s)	583, 616
Sau96I	GGNCC	3 cut(s)	398, 556, 908
SchI	GAGTC	3 cut(s)	299, 369, 491
SfaNI	GCATC	1 cut(s)	610
SfcI	CTRYAG	1 cut(s)	163
SfoI	GGCGCC	1 cut(s)	418
Sfr274I	CTCGAG	1 cut(s)	713
SinI	GGWCC	1 cut(s)	908
SlaI	CTCGAG	1 cut(s)	713
SmlI	CTYRAG	3 cut(s)	85, 297, 713
SmoI	CTYRAG	3 cut(s)	85, 297, 713
SphI	GCATGC	1 cut(s)	546
Sse9I	AATT	7 cut(s)	103, 135, 140, 522, 653, 786, 828
SspDI	GGCGCC	1 cut(s)	416
SspMI	CTAG	1 cut(s)	566
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	3 cut(s)	507, 699, 748
TaqI	TCGA	5 cut(s)	126, 358, 458, 531, 714
TasI	AATT	7 cut(s)	103, 135, 140, 522, 653, 786, 828
TatI	WGTACW	1 cut(s)	331
TauI	GCSGC	4 cut(s)	54, 343, 355, 399
TfiI	GAWTC	3 cut(s)	311, 574, 914
Tru1I	TTAA	3 cut(s)	134, 228, 611
Tru9I	TTAA	3 cut(s)	134, 228, 611
TseI	GCWGC	1 cut(s)	623
TspDTI	ATGAA	3 cut(s)	146, 840, 906
VpaK11BI	GGWCC	1 cut(s)	908
XceI	RCATGY	1 cut(s)	546
XhoI	CTCGAG	1 cut(s)	713
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.