RLG00000029513

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003693
Physical Location & Seq
Reverse (-)
39674402 .. 39675328
927 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029513

Sequence Viewer

Length: 636 bp
ATGGTCCAAGGTGAGTGGGCTGCACCGGAAATTCCCACAGTTATCCCCAAAGCTTTCTCCAAGGGCGCTGCGTACATTCCTGCTTCAGTGGACTCCCTCCTCGACGAGGAAAGCATTGCTTGGATAAAGCAACACTTGCTCAAGCCTAAGACTGAAGAGGAGTTGGAGAAAAAAGAAAGTGTCAGGATGGACATCAGGTGTGTTAAGTTGCCCGCACCGCAAGGAAGGAAATCCTCCAAGAAGCCGAAACTGACTGAGGACAATACCGGAAGTGCCCGCAGCGGGTTTAAGAATGTTCGTGGTGAGGTTGACTCTAGTCGTGGCGATAAGGAAGCTTCAGGAACACTCTCCCTACTTCAAACCACTGTCCCTAATTCACCTCATAAGTCAGCTAGTGACCACTTTGCAATTTCCCTCTCCGACACCCACCTTGTGGCTTGCCTAAATGTTTCATCGTCAAACTTGAAGCTCCCCTTACAACTTACCTTCCCAAAGAGGGATGACTCTTACGTGCTGGAAGGCAACCCTATTGCTTTCGACAAAGAGGCATGTTTGGCGGTGGCGCAATCATTGGCCTTGAATGACGTCAACTGCAAGAAGCTCTCTGGTTTGAGTATGAAAGATATCTCAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

22.84

Weight (kDa)

7.65

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 588
AccB7I CCANNNNNTGG 1 cut(s) 433
AciI CCGC 5 cut(s) 213, 218, 277, 282, 557
AcsI RAATTY 1 cut(s) 30
AcuI CTGAAG 3 cut(s) 69, 174, 321
AcyI GRCGYC 1 cut(s) 585
AdeI CACNNNGTG 1 cut(s) 433
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 4 cut(s) 106, 282, 433, 496
AgsI TTSAA 3 cut(s) 359, 466, 580
AluBI AGCT 5 cut(s) 53, 335, 392, 469, 601
AluI AGCT 5 cut(s) 53, 335, 392, 469, 601
AoxI GGCC 1 cut(s) 573
ApeKI GCWGC 3 cut(s) 20, 68, 279
ApoI RAATTY 1 cut(s) 30
AspLEI GCGC 2 cut(s) 68, 565
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 23, 314, 369
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 277
BbvI GCAGC 3 cut(s) 7, 55, 291
BccI CCATC 1 cut(s) 181
BfaI CTAG 2 cut(s) 315, 393
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 3 cut(s) 21, 69, 280
BlsI GCNGC 3 cut(s) 22, 70, 281
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BoxI GACNNNNGTC 1 cut(s) 315
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BpuEI CTTGAG 1 cut(s) 125
BsaAI YACGTR 1 cut(s) 511
BsaBI GATNNNNATC 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 585
BsaJI CCNNGG 2 cut(s) 7, 60
BsaWI WCCGGW 2 cut(s) 25, 266
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 282, 433, 496
Bse3DI GCAATG 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 7, 60
BseGI GGATG 2 cut(s) 192, 505
BseJI GATNNNNATC 1 cut(s) 191
BseLI CCNNNNNNNGG 4 cut(s) 106, 282, 433, 496
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 246
BseRI GAGGAG 2 cut(s) 89, 173
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 3 cut(s) 7, 55, 291
BsgI GTGCAG 1 cut(s) 6
BshFI GGCC 1 cut(s) 575
BsiSI CCGG 2 cut(s) 26, 267
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 4 cut(s) 106, 282, 433, 496
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 1 cut(s) 575
Bsp1286I GDGCHC 1 cut(s) 277
BspACI CCGC 5 cut(s) 213, 218, 277, 282, 557
BspANI GGCC 1 cut(s) 575
BspCNI CTCAG 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 7, 60
BssNI GRCGYC 1 cut(s) 585
BssT1I CCWWGG 2 cut(s) 7, 60
Bst4CI ACNGT 2 cut(s) 40, 367
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 585
BstAPI GCANNNNNTGC 1 cut(s) 136
BstBAI YACGTR 1 cut(s) 511
BstC8I GCNNGC 3 cut(s) 213, 277, 439
BstDEI CTNAG 3 cut(s) 147, 255, 628
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 192, 505
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 68, 565
BstMWI GCNNNNNNNGC 3 cut(s) 136, 217, 554
BstNSI RCATGY 1 cut(s) 552
BstPAI GACNNNNGTC 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 3 cut(s) 7, 55, 291
BsuRI GGCC 1 cut(s) 575
BtsCI GGATG 2 cut(s) 192, 505
BtsIMutI CAGTG 2 cut(s) 93, 363
Cac8I GCNNGC 3 cut(s) 213, 277, 439
CfoI GCGC 2 cut(s) 68, 565
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 73
CspCI CAANNNNNGTGG 1 cut(s) 31
CviAII CATG 1 cut(s) 549
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 3 cut(s) 147, 255, 628
DraIII CACNNNGTG 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 2 cut(s) 7, 60
Eco32I GATATC 1 cut(s) 625
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 3 cut(s) 69, 174, 321
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoRV GATATC 1 cut(s) 625
EcoT14I CCWWGG 2 cut(s) 7, 60
ErhI CCWWGG 2 cut(s) 7, 60
FaeI CATG 1 cut(s) 552
FaiI YATR 3 cut(s) 384, 550, 617
FalI AAGNNNNNCTT 6 cut(s) 103, 135, 119, 151, 458, 490
FaqI GGGAC 1 cut(s) 353
FatI CATG 1 cut(s) 548
FauI CCCGC 3 cut(s) 220, 275, 284
Fnu4HI GCNGC 3 cut(s) 21, 69, 280
FokI GGATG 2 cut(s) 199, 512
Fsp4HI GCNGC 3 cut(s) 21, 69, 280
FspBI CTAG 2 cut(s) 315, 393
GlaI GCGC 2 cut(s) 67, 564
GluI GCNGC 3 cut(s) 21, 69, 280
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 575
HapII CCGG 2 cut(s) 26, 267
HhaI GCGC 2 cut(s) 68, 565
Hin1I GRCGYC 1 cut(s) 585
Hin1II CATG 1 cut(s) 552
Hin6I GCGC 2 cut(s) 66, 563
HinP1I GCGC 2 cut(s) 66, 563
HincII GTYRAC 2 cut(s) 310, 589
HindII GTYRAC 2 cut(s) 310, 589
HindIII AAGCTT 2 cut(s) 51, 333
HinfI GANTC 3 cut(s) 92, 311, 503
HpaII CCGG 2 cut(s) 26, 267
HphI GGTGA 3 cut(s) 23, 314, 369
Hpy166II GTNNAC 3 cut(s) 91, 310, 589
Hpy188I TCNGA 1 cut(s) 421
Hpy188III TCNNGA 2 cut(s) 184, 339
Hpy8I GTNNAC 3 cut(s) 91, 310, 589
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 3 cut(s) 219, 496, 512
HpyCH4III ACNGT 2 cut(s) 40, 367
HpyCH4IV ACGT 2 cut(s) 510, 585
HpyCH4V TGCA 3 cut(s) 23, 407, 594
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 217, 554
HpyF3I CTNAG 3 cut(s) 147, 255, 628
HpySE526I ACGT 2 cut(s) 510, 585
Hsp92I GRCGYC 1 cut(s) 585
Hsp92II CATG 1 cut(s) 552
HspAI GCGC 2 cut(s) 66, 563
LmnI GCTCC 1 cut(s) 474
LpnPI CCDG 8 cut(s) 39, 93, 169, 181, 280, 324, 500, 591
Lsp1109I GCAGC 3 cut(s) 7, 55, 291
MaeI CTAG 2 cut(s) 315, 393
MaeII ACGT 2 cut(s) 510, 585
MaeIII GTNAC 1 cut(s) 395
MboII GAAGA 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 3 cut(s) 30, 373, 408
MlyI GAGTC 3 cut(s) 86, 305, 497
MmeI TCCRAC 2 cut(s) 144, 444
MseI TTAA 2 cut(s) 204, 288
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 2 cut(s) 26, 267
MwoI GCNNNNNNNGC 3 cut(s) 136, 217, 554
NlaIII CATG 1 cut(s) 552
NmuCI GTSAC 1 cut(s) 395
NspI RCATGY 1 cut(s) 552
PflMI CCANNNNNTGG 1 cut(s) 433
PkrI GCNGC 3 cut(s) 22, 70, 281
PleI GAGTC 3 cut(s) 86, 305, 497
PpsI GAGTC 3 cut(s) 86, 305, 497
Ppu21I YACGTR 1 cut(s) 511
PshAI GACNNNNGTC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SaqAI TTAA 2 cut(s) 204, 288
SatI GCNGC 3 cut(s) 21, 69, 280
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 3 cut(s) 86, 305, 497
SduI GDGCHC 1 cut(s) 277
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 3 cut(s) 30, 373, 408
SsiI CCGC 5 cut(s) 213, 218, 277, 282, 557
SspMI CTAG 2 cut(s) 315, 393
StyI CCWWGG 2 cut(s) 7, 60
TaaI ACNGT 2 cut(s) 40, 367
TaiI ACGT 2 cut(s) 513, 588
TaqI TCGA 2 cut(s) 102, 537
TasI AATT 3 cut(s) 30, 373, 408
Tru1I TTAA 2 cut(s) 204, 288
Tru9I TTAA 2 cut(s) 204, 288
TscAI CASTG 2 cut(s) 93, 370
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 3 cut(s) 20, 68, 279
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 441, 632
TspRI CASTG 2 cut(s) 93, 370
Van91I CCANNNNNTGG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 104
XapI RAATTY 1 cut(s) 30
XceI RCATGY 1 cut(s) 552
XspI CTAG 2 cut(s) 315, 393
ZraI GACGTC 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.