Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003693

Physical Location & Seq

Genomic Coordinates Reverse (-)

2006533 .. 2008480

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022496

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGTTGAAGGATACAAAGTCCATGAAGATGGGTCCATTGGCGGACTCCGGGCAAGAAGAGGTTGAAAATGACCTATTCGTTTGGACGCCGAAGGATATTCAGATCAAAAGGGTAAGGGACCACATTGTGGCCTGCATCACTGAAACAACACCACGCCCCCTCGAAGAGGTTTTTGACGAGAGGGCAAGTAATTTCTCTAACTGGAAGAGTGAACGGCTTATGGTTCTTGGTGATTGGGCCGCACCAGAAGGTCCAACTTCAATTCCTAAGGCTTTCTTCGAGCGGGCTGCGTACGTGCCCGCCTTGGTTGACTCTTTTCTTAGTGAGTCTCGCATTAGGTGGTTAAAGGATCATGTGTTGTCTCGAGGGTGGAATGTTGCTCAATTCGCTTTGAAATTGTTTCGCCGCGTCATTGAGTTGGAGAGTAAATTTATAGTCTCTGAACACGTTCCTGCGTTGTTTGCAGAAAGCTTCAAGACCGAGGATCTTGTTGAAGAGCCAGAGAGATCAGTGGAAGGCGGAATGGAGATCCAGAAAGTGAAGGCTTTTGCATTGCAAGGGAGGAAAACCAAAAAAATTGTCTCACATCATCATCGAAACAGCTCGAGCCAAATACCAAAACTATTGGAGCTGGCTCCTGAGGTGACAAAAAACCATGAGGGCCCTCTTCGCTGCCTCGACTTGATCCCTCACATTCACCATGCCGGAGTTAGTCTTGACGCTCACCCAATTGGTTCACCGTCCTCCTTAAAACCTCGCTTGCAACTATCTTTCCGTAGAGATGATGGCTCATACATGTTGGAGGGAGATCCAATTGCCTTTGATAAAGAAGCGTGTTTGGTCGTGGCACAATTCTTGGCCCTGAATACCATTGACCACGATAAGCTTTCTCATCTGATTTTGAGGGACCTCGCGGCGCAATTTGCCTTATGCTTACAATCAATAAGCCTTGTCAATGACGCAACATATTGTGATGAGGACAGATGCCACCGAAGAAGGACAATGGAGTATCGTGAACAAGGCCTAAGGAGAAGCTCAGATGCCACCGAAGAAGGACAATGGAGTATCGTGAACAAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

361

Amino Acids

40.95

Weight (kDa)

6.18

Isoelectric Point (pI)

56.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05721
rosa_chinensis	RchiOBHm_Chr1g0343511
rosa_laevigata	RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661
rosa_multiflora	Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004
rosa_roxburghii	Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460
rosa_samantha	Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	127
AccBSI	CCGCTC	1 cut(s)	283
AccII	CGCG	2 cut(s)	408, 914
AciI	CCGC	7 cut(s)	41, 240, 283, 300, 406, 519, 914
AclWI	GGATC	5 cut(s)	357, 492, 523, 679, 803
AcsI	RAATTY	1 cut(s)	428
AcyI	GRCGYC	1 cut(s)	86
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	127, 166
AflIII	ACRYGT	2 cut(s)	445, 795
AgsI	TTSAA	6 cut(s)	7, 65, 261, 394, 475, 494
AluBI	AGCT	5 cut(s)	471, 603, 631, 886, 1035
AluI	AGCT	5 cut(s)	471, 603, 631, 886, 1035
Alw26I	GTCTC	4 cut(s)	333, 366, 442, 586
AlwI	GGATC	5 cut(s)	357, 492, 523, 679, 803
Ama87I	CYCGRG	2 cut(s)	363, 604
AoxI	GGCC	6 cut(s)	129, 237, 661, 858, 1021, 1077
ApaI	GGGCCC	1 cut(s)	665
ApeKI	GCWGC	2 cut(s)	287, 672
ApoI	RAATTY	1 cut(s)	428
ArsI	GACNNNNNNTTYG	2 cut(s)	564, 596
Asp700I	GAANNNNTTC	1 cut(s)	447
AspLEI	GCGC	1 cut(s)	919
AspS9I	GGNCC	8 cut(s)	32, 118, 237, 251, 661, 662, 859, 907
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	5 cut(s)	242, 655, 689, 716, 729
AvaI	CYCGRG	2 cut(s)	363, 604
AvaII	GGWCC	4 cut(s)	32, 118, 251, 907
AxyI	CCTNAGG	3 cut(s)	267, 639, 1025
BaeGI	GKGCMC	2 cut(s)	300, 665
BanII	GRGCYC	1 cut(s)	665
BbvI	GCAGC	2 cut(s)	274, 659
BccI	CCATC	2 cut(s)	22, 779
BceAI	ACGGC	1 cut(s)	230
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciVI	GTATCC	1 cut(s)	4
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	4 cut(s)	333, 366, 442, 586
BfuI	GTATCC	1 cut(s)	4
BisI	GCNGC	5 cut(s)	240, 288, 406, 673, 915
BlsI	GCNGC	5 cut(s)	241, 289, 407, 674, 916
Bme1390I	CCNGG	1 cut(s)	49
Bme18I	GGWCC	4 cut(s)	32, 118, 251, 907
BmeT110I	CYCGRG	2 cut(s)	363, 604
BmgT120I	GGNCC	8 cut(s)	32, 118, 237, 251, 661, 662, 859, 907
BmiI	GGNNCC	5 cut(s)	33, 119, 636, 663, 908
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	3 cut(s)	144, 974, 1030
BpuMI	CCSGG	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	303, 480
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 166
Bse1I	ACTGG	1 cut(s)	206
Bse21I	CCTNAGG	3 cut(s)	267, 639, 1025
Bse3DI	GCAATG	1 cut(s)	551
BseDI	CCNNGG	2 cut(s)	303, 480
BseLI	CCNNNNNNNGG	2 cut(s)	127, 166
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	2 cut(s)	630, 1050
BseNI	ACTGG	1 cut(s)	206
BseSI	GKGCMC	2 cut(s)	300, 665
BseXI	GCAGC	2 cut(s)	274, 659
Bsh1236I	CGCG	2 cut(s)	408, 914
BshFI	GGCC	6 cut(s)	131, 239, 663, 860, 1023, 1079
BsiHKCI	CYCGRG	2 cut(s)	363, 604
BsiSI	CCGG	2 cut(s)	48, 705
BsiWI	CGTACG	1 cut(s)	291
BslFI	GGGAC	2 cut(s)	131, 920
BslI	CCNNNNNNNGG	2 cut(s)	127, 166
BsmAI	GTCTC	4 cut(s)	333, 366, 442, 586
BsmFI	GGGAC	2 cut(s)	131, 920
BsnI	GGCC	6 cut(s)	131, 239, 663, 860, 1023, 1079
BsoBI	CYCGRG	2 cut(s)	363, 604
Bsp120I	GGGCCC	1 cut(s)	661
Bsp1286I	GDGCHC	2 cut(s)	300, 665
Bsp143I	GATC	7 cut(s)	102, 349, 484, 506, 528, 684, 808
BspACI	CCGC	7 cut(s)	41, 240, 283, 300, 406, 519, 914
BspANI	GGCC	6 cut(s)	131, 239, 663, 860, 1023, 1079
BspCNI	CTCAG	2 cut(s)	631, 1049
BspFNI	CGCG	2 cut(s)	408, 914
BspLI	GGNNCC	5 cut(s)	33, 119, 636, 663, 908
BspPI	GGATC	5 cut(s)	357, 492, 523, 679, 803
BspQI	GCTCTTC	1 cut(s)	489
BsrBI	CCGCTC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	303, 480
BssMI	GATC	7 cut(s)	102, 349, 484, 506, 528, 684, 808
BssNI	GRCGYC	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	741
Bst6I	CTCTTC	5 cut(s)	51, 159, 200, 489, 672
BstACI	GRCGYC	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	5 cut(s)	133, 285, 300, 633, 761
BstDEI	CTNAG	5 cut(s)	267, 320, 639, 1025, 1036
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstFNI	CGCG	2 cut(s)	408, 914
BstHHI	GCGC	1 cut(s)	919
BstKTI	GATC	7 cut(s)	105, 352, 487, 509, 531, 687, 811
BstMAI	GTCTC	4 cut(s)	333, 366, 442, 586
BstMBI	GATC	7 cut(s)	102, 349, 484, 506, 528, 684, 808
BstMWI	GCNNNNNNNGC	4 cut(s)	386, 461, 669, 923
BstNSI	RCATGY	1 cut(s)	799
BstSCI	CCNGG	1 cut(s)	47
BstSLI	GKGCMC	2 cut(s)	300, 665
BstUI	CGCG	2 cut(s)	408, 914
BstV1I	GCAGC	2 cut(s)	274, 659
BstX2I	RGATCY	3 cut(s)	484, 528, 808
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	3 cut(s)	484, 528, 808
Bsu36I	CCTNAGG	3 cut(s)	267, 639, 1025
BsuI	GTATCC	1 cut(s)	4
BsuRI	GGCC	6 cut(s)	131, 239, 663, 860, 1023, 1079
BtsIMutI	CAGTG	2 cut(s)	138, 516
Cac8I	GCNNGC	5 cut(s)	133, 285, 300, 633, 761
CfoI	GCGC	1 cut(s)	919
Cfr13I	GGNCC	8 cut(s)	32, 118, 237, 251, 661, 662, 859, 907
CseI	GACGC	4 cut(s)	94, 397, 728, 968
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	5 cut(s)	22, 353, 656, 701, 796
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	5 cut(s)	267, 320, 639, 1025, 1036
DpnI	GATC	7 cut(s)	104, 351, 486, 508, 530, 686, 810
DpnII	GATC	7 cut(s)	102, 349, 484, 506, 528, 684, 808
DraIII	CACNNNGTG	1 cut(s)	127
Eam1104I	CTCTTC	5 cut(s)	51, 159, 200, 489, 672
EarI	CTCTTC	5 cut(s)	51, 159, 200, 489, 672
EciI	GGCGGA	2 cut(s)	56, 534
Eco130I	CCWWGG	1 cut(s)	303
Eco147I	AGGCCT	2 cut(s)	1023, 1079
Eco24I	GRGCYC	1 cut(s)	665
Eco47I	GGWCC	4 cut(s)	32, 118, 251, 907
Eco81I	CCTNAGG	3 cut(s)	267, 639, 1025
Eco88I	CYCGRG	2 cut(s)	363, 604
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoO109I	RGGNCCY	3 cut(s)	661, 662, 907
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	665
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	5 cut(s)	25, 356, 659, 704, 799
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	2 cut(s)	131, 920
FatI	CATG	5 cut(s)	21, 352, 655, 700, 795
FauI	CCCGC	2 cut(s)	276, 307
Fnu4HI	GCNGC	5 cut(s)	240, 288, 406, 673, 915
FriOI	GRGCYC	1 cut(s)	665
Fsp4HI	GCNGC	5 cut(s)	240, 288, 406, 673, 915
GlaI	GCGC	1 cut(s)	918
GluI	GCNGC	5 cut(s)	240, 288, 406, 673, 915
HaeIII	GGCC	6 cut(s)	131, 239, 663, 860, 1023, 1079
HapII	CCGG	2 cut(s)	48, 705
HgaI	GACGC	4 cut(s)	94, 397, 728, 968
HhaI	GCGC	1 cut(s)	919
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	5 cut(s)	25, 356, 659, 704, 799
Hin6I	GCGC	1 cut(s)	917
HinP1I	GCGC	1 cut(s)	917
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	2 cut(s)	469, 884
HinfI	GANTC	3 cut(s)	44, 311, 326
HpaII	CCGG	2 cut(s)	48, 705
HphI	GGTGA	5 cut(s)	242, 655, 689, 716, 729
Hpy166II	GTNNAC	5 cut(s)	212, 310, 737, 1016, 1072
Hpy188I	TCNGA	4 cut(s)	102, 442, 897, 1039
Hpy188III	TCNNGA	7 cut(s)	363, 475, 532, 638, 716, 1013, 1069
Hpy8I	GTNNAC	5 cut(s)	212, 310, 737, 1016, 1072
HpyAV	CCTTC	6 cut(s)	85, 242, 509, 535, 990, 1046
HpyCH4III	ACNGT	1 cut(s)	741
HpyCH4IV	ACGT	2 cut(s)	294, 447
HpyCH4V	TGCA	5 cut(s)	135, 464, 551, 556, 763
HpyF10VI	GCNNNNNNNGC	4 cut(s)	386, 461, 669, 923
HpyF3I	CTNAG	5 cut(s)	267, 320, 639, 1025, 1036
HpySE526I	ACGT	2 cut(s)	294, 447
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	5 cut(s)	25, 356, 659, 704, 799
HspAI	GCGC	1 cut(s)	917
Kzo9I	GATC	7 cut(s)	102, 349, 484, 506, 528, 684, 808
LguI	GCTCTTC	1 cut(s)	489
LmnI	GCTCC	2 cut(s)	628, 640
Lsp1109I	GCAGC	2 cut(s)	274, 659
LweI	GCATC	3 cut(s)	144, 974, 1030
MaeII	ACGT	2 cut(s)	294, 447
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	7 cut(s)	104, 351, 486, 508, 530, 686, 810
MbiI	CCGCTC	1 cut(s)	283
MboI	GATC	7 cut(s)	102, 349, 484, 506, 528, 684, 808
MboII	GAAGA	9 cut(s)	37, 68, 176, 217, 268, 506, 659, 1005, 1061
MfeI	CAATTG	2 cut(s)	729, 813
MflI	RGATCY	3 cut(s)	484, 528, 808
MhlI	GDGCHC	2 cut(s)	300, 665
MlyI	GAGTC	3 cut(s)	38, 305, 335
MmeI	TCCRAC	3 cut(s)	278, 399, 780
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	2 cut(s)	344, 749
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	2 cut(s)	48, 705
MspR9I	CCNGG	1 cut(s)	49
MunI	CAATTG	2 cut(s)	729, 813
MvnI	CGCG	2 cut(s)	408, 914
MwoI	GCNNNNNNNGC	4 cut(s)	386, 461, 669, 923
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	7 cut(s)	102, 349, 484, 506, 528, 684, 808
NlaIII	CATG	5 cut(s)	25, 356, 659, 704, 799
NlaIV	GGNNCC	5 cut(s)	33, 119, 636, 663, 908
NmuCI	GTSAC	1 cut(s)	643
NspI	RCATGY	1 cut(s)	799
PaeR7I	CTCGAG	2 cut(s)	363, 604
PceI	AGGCCT	2 cut(s)	1023, 1079
PciI	ACATGT	1 cut(s)	795
PciSI	GCTCTTC	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	447
Pfl23II	CGTACG	1 cut(s)	291
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	5 cut(s)	241, 289, 407, 674, 916
PleI	GAGTC	3 cut(s)	38, 305, 334
PpsI	GAGTC	3 cut(s)	38, 305, 334
Ppu21I	YACGTR	1 cut(s)	295
PpuMI	RGGWCCY	1 cut(s)	907
PscI	ACATGT	1 cut(s)	795
Psp5II	RGGWCCY	1 cut(s)	907
PspLI	CGTACG	1 cut(s)	291
PspN4I	GGNNCC	5 cut(s)	33, 119, 636, 663, 908
PspOMI	GGGCCC	1 cut(s)	661
PspPI	GGNCC	8 cut(s)	32, 118, 237, 251, 661, 662, 859, 907
PspPPI	RGGWCCY	1 cut(s)	907
PspXI	VCTCGAGB	1 cut(s)	604
PsuI	RGATCY	3 cut(s)	484, 528, 808
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	26
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	344, 749
SatI	GCNGC	5 cut(s)	240, 288, 406, 673, 915
Sau3AI	GATC	7 cut(s)	102, 349, 484, 506, 528, 684, 808
Sau96I	GGNCC	8 cut(s)	32, 118, 237, 251, 661, 662, 859, 907
SchI	GAGTC	3 cut(s)	38, 305, 335
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	2 cut(s)	300, 665
SfaNI	GCATC	3 cut(s)	144, 974, 1030
Sfr274I	CTCGAG	2 cut(s)	363, 604
SinI	GGWCC	4 cut(s)	32, 118, 251, 907
SlaI	CTCGAG	2 cut(s)	363, 604
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	2 cut(s)	363, 604
SmoI	CTYRAG	2 cut(s)	363, 604
SseBI	AGGCCT	2 cut(s)	1023, 1079
SsiI	CCGC	7 cut(s)	41, 240, 283, 300, 406, 519, 914
StuI	AGGCCT	2 cut(s)	1023, 1079
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	741
TaiI	ACGT	2 cut(s)	297, 450
TaqI	TCGA	6 cut(s)	162, 279, 364, 595, 605, 678
TaqII	GACCGA	1 cut(s)	494
TauI	GCSGC	3 cut(s)	242, 408, 917
Tru1I	TTAA	2 cut(s)	344, 749
Tru9I	TTAA	2 cut(s)	344, 749
TscAI	CASTG	2 cut(s)	145, 516
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	2 cut(s)	287, 672
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	764
TspRI	CASTG	2 cut(s)	145, 516
Van91I	CCANNNNNTGG	1 cut(s)	127
VpaK11BI	GGWCC	4 cut(s)	32, 118, 251, 907
XagI	CCTNNNNNAGG	1 cut(s)	164
XapI	RAATTY	1 cut(s)	428
XceI	RCATGY	1 cut(s)	799
XhoI	CTCGAG	2 cut(s)	363, 604
XmnI	GAANNNNTTC	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.