Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004413.1

Orthogroup ID

OG0003693

Physical Location & Seq

Genomic Coordinates Forward (+)

53360 .. 53947

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004413.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgccatccaaagaccacaaggttcagcttaatttcagcatatgtgctgacttacctaacgagtctcctatcagctgtgggggagtgaacaggaaagaaactgctctttatgtcagccctaaatccaaagcgttgaatgatctgattccaatctctttcgacgactcatttgtctgttctcgatcccagtcgttcgatctccatttcaacgatgctgacactcagcatcaccttcaagcttggctcaccgacttggaaaaaggtgggcgtaaagatcctctgaaggccgatatcgaaagcaattcccacgacactcacattgacacaggcttttcccgccctcactgcctgcgtcttagctcgaagaggtgcgggaactctaatcagtcacattttctagctatgctgaaagaactatgcatactcaggggcttgcatgattatgtccaggttgaaagcgaacaacttagagctgaagttaagataaagaaagaaggatacgatcaggctgtcagggaggtcaggaaccttcagcgaagagaatggtctggggatggcattagagctgctgctttagaagagggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

22.0

Weight (kDa)

6.3

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05721
rosa_chinensis	RchiOBHm_Chr1g0343511
rosa_laevigata	RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661
rosa_multiflora	Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004
rosa_roxburghii	Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460
rosa_samantha	Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AciI	CCGC	2 cut(s)	337, 372
AclWI	GGATC	2 cut(s)	177, 269
AcuI	CTGAAG	3 cut(s)	302, 495, 515
AgsI	TTSAA	4 cut(s)	136, 208, 236, 455
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	7 cut(s)	28, 75, 239, 360, 401, 473, 566
AluI	AGCT	7 cut(s)	28, 75, 239, 360, 401, 473, 566
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	177, 269
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	2 cut(s)	566, 569
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AsuHPI	GGTGA	2 cut(s)	221, 238
BbvI	GCAGC	2 cut(s)	553, 556
BccI	CCATC	2 cut(s)	13, 548
BciT130I	CCWGG	1 cut(s)	449
BciVI	GTATCC	1 cut(s)	491
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	398
BfuI	GTATCC	1 cut(s)	491
BisI	GCNGC	2 cut(s)	567, 570
BlsI	GCNGC	2 cut(s)	568, 571
Bme1390I	CCNGG	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	527
BmrFI	CCNGG	1 cut(s)	449
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	2 cut(s)	202, 235
BmuI	ACTGGG	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	187
Bse8I	GATNNNNATC	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	449
BseGI	GGATG	2 cut(s)	5, 559
BseJI	GATNNNNATC	1 cut(s)	149
BseMII	CTCAG	2 cut(s)	236, 439
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	553, 556
BshFI	GGCC	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	287
Bsp143I	GATC	5 cut(s)	139, 182, 196, 274, 502
BspACI	CCGC	2 cut(s)	337, 372
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	2 cut(s)	235, 438
BspLI	GGNNCC	1 cut(s)	527
BspPI	GGATC	2 cut(s)	177, 269
BsrI	ACTGG	1 cut(s)	187
BssMI	GATC	5 cut(s)	139, 182, 196, 274, 502
Bst2UI	CCWGG	1 cut(s)	449
Bst6I	CTCTTC	3 cut(s)	359, 532, 573
BstC8I	GCNNGC	2 cut(s)	350, 434
BstDEI	CTNAG	4 cut(s)	222, 356, 425, 467
BstF5I	GGATG	2 cut(s)	5, 559
BstKTI	GATC	5 cut(s)	142, 185, 199, 277, 505
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	5 cut(s)	139, 182, 196, 274, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 345
BstNI	CCWGG	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	553, 556
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	2 cut(s)	5, 559
BtsI	GCAGTG	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	2 cut(s)	350, 434
CseI	GACGC	1 cut(s)	341
CviAII	CATG	1 cut(s)	437
DdeI	CTNAG	4 cut(s)	222, 356, 425, 467
DpnI	GATC	5 cut(s)	141, 184, 198, 276, 504
DpnII	GATC	5 cut(s)	139, 182, 196, 274, 502
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	3 cut(s)	359, 532, 573
EarI	CTCTTC	3 cut(s)	359, 532, 573
Eco32I	GATATC	1 cut(s)	292
Eco57I	CTGAAG	3 cut(s)	302, 495, 515
EcoRII	CCWGG	1 cut(s)	447
EcoRV	GATATC	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	422
FaeI	CATG	1 cut(s)	440
FaiI	YATR	8 cut(s)	41, 43, 111, 404, 418, 422, 438, 444
FatI	CATG	1 cut(s)	436
FauI	CCCGC	2 cut(s)	344, 365
FauNDI	CATATG	1 cut(s)	41
Fnu4HI	GCNGC	2 cut(s)	567, 570
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	2 cut(s)	567, 570
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	2 cut(s)	567, 570
HaeIII	GGCC	1 cut(s)	287
HgaI	GACGC	1 cut(s)	341
Hin1II	CATG	1 cut(s)	440
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	3 cut(s)	62, 145, 164
HphI	GGTGA	2 cut(s)	221, 238
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	144, 282
Hpy188III	TCNNGA	2 cut(s)	180, 523
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	4 cut(s)	242, 277, 488, 539
HpyCH4V	TGCA	2 cut(s)	420, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 345
HpyF3I	CTNAG	4 cut(s)	222, 356, 425, 467
Hsp92II	CATG	1 cut(s)	440
Kzo9I	GATC	5 cut(s)	139, 182, 196, 274, 502
Lsp1109I	GCAGC	2 cut(s)	553, 556
LweI	GCATC	2 cut(s)	202, 235
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	1 cut(s)	387
MalI	GATC	5 cut(s)	141, 184, 198, 276, 504
MboI	GATC	5 cut(s)	139, 182, 196, 274, 502
MboII	GAAGA	2 cut(s)	376, 549
MflI	RGATCY	1 cut(s)	274
MluCI	AATT	2 cut(s)	31, 301
MlyI	GAGTC	2 cut(s)	71, 158
MnlI	CCTC	5 cut(s)	288, 351, 360, 511, 574
Mph1103I	ATGCAT	1 cut(s)	422
MseI	TTAA	2 cut(s)	30, 480
MslI	CAYNNNNRTG	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	2 cut(s)	336, 345
NdeI	CATATG	1 cut(s)	41
NdeII	GATC	5 cut(s)	139, 182, 196, 274, 502
NlaIII	CATG	1 cut(s)	440
NlaIV	GGNNCC	1 cut(s)	527
NmuCI	GTSAC	1 cut(s)	387
NsiI	ATGCAT	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	568, 571
PleI	GAGTC	2 cut(s)	70, 158
PpsI	GAGTC	2 cut(s)	70, 158
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	527
PsrI	GAACNNNNNNTAC	2 cut(s)	405, 437
PsuI	RGATCY	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	2 cut(s)	30, 480
SatI	GCNGC	2 cut(s)	567, 570
Sau3AI	GATC	5 cut(s)	139, 182, 196, 274, 502
SchI	GAGTC	2 cut(s)	71, 158
ScrFI	CCNGG	1 cut(s)	449
SfaNI	GCATC	2 cut(s)	202, 235
SmiMI	CAYNNNNRTG	1 cut(s)	441
Sse9I	AATT	2 cut(s)	31, 301
SsiI	CCGC	2 cut(s)	337, 372
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	447
TaqI	TCGA	5 cut(s)	159, 181, 195, 294, 362
TasI	AATT	2 cut(s)	31, 301
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	30, 480
Tru9I	TTAA	2 cut(s)	30, 480
TscAI	CASTG	1 cut(s)	350
TseFI	GTSAC	1 cut(s)	387
TseI	GCWGC	2 cut(s)	566, 569
Tsp45I	GTSAC	1 cut(s)	387
TspRI	CASTG	1 cut(s)	350
XspI	CTAG	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.