Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003693

Physical Location & Seq

Genomic Coordinates Reverse (-)

11989457 .. 11989893

Gene Structure 437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022772

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCCTTATAAGAACCACAAGGTTCATCTTAATTTCAGCATCTGTGCTGACCTGCCAGACGAGGCCCCTGCAGGTCATGGGAGGACAAAAGGGAAGGAAGCCATAGCTGACACGAGCCTGGCTTTCCACTTGGAGATGGATTCTCTAAAAAATCATCTTGGAGATAGTTCCCAAGGCGCCCAAATGGACGTCGACTCTTCTCATCCTCGCCGTAGAAGCCTTAGCTTAGAGCGATTTGAGAATTCTGGTTCGGCGCATTTGTTTGCGGCTCAGAAAGAGCTGCGCTCTCTCAAGGGGCTTTATGATCAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.49

Weight (kDa)

6.64

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05721
rosa_chinensis	RchiOBHm_Chr1g0343511
rosa_laevigata	RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661
rosa_multiflora	Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004
rosa_roxburghii	Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460
rosa_samantha	Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
AatII	GACGTC	1 cut(s)	192
Acc36I	ACCTGC	2 cut(s)	60, 62
AccB1I	GGYRCC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	241
AcyI	GRCGYC	2 cut(s)	177, 189
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	3 cut(s)	107, 225, 280
AluI	AGCT	3 cut(s)	107, 225, 280
AlwNI	CAGNNNCTG	1 cut(s)	42
AoxI	GGCC	2 cut(s)	63, 309
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	1 cut(s)	241
AspLEI	GCGC	3 cut(s)	179, 256, 285
AspS9I	GGNCC	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	195
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	304
BfmI	CTRYAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	180
BfuAI	ACCTGC	2 cut(s)	60, 62
BisI	GCNGC	2 cut(s)	267, 281
BlsI	GCNGC	2 cut(s)	268, 282
Bme1390I	CCNGG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	66, 178
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
Bpu10I	CCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	275
BsaHI	GRCGYC	2 cut(s)	177, 189
BsaJI	CCNNGG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	267
BshFI	GGCC	2 cut(s)	65, 311
BshNI	GGYRCC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	65, 311
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	2 cut(s)	65, 311
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	66, 178
BspMAI	CTGCAG	1 cut(s)	73
BspMI	ACCTGC	2 cut(s)	60, 62
BspT107I	GGYRCC	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	1 cut(s)	304
BssNI	GRCGYC	2 cut(s)	177, 189
BssSI	CACGAG	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	172
Bst2BI	CACGAG	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	202
BstACI	GRCGYC	2 cut(s)	177, 189
BstDEI	CTNAG	3 cut(s)	221, 226, 270
BstF5I	GGATG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	3 cut(s)	179, 256, 285
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	65, 311
BtsCI	GGATG	1 cut(s)	202
BveI	ACCTGC	2 cut(s)	60, 62
CaiI	CAGNNNCTG	1 cut(s)	42
CfoI	GCGC	3 cut(s)	179, 256, 285
Cfr13I	GGNCC	1 cut(s)	64
CviAII	CATG	1 cut(s)	77
DdeI	CTNAG	3 cut(s)	221, 226, 270
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	172
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	1 cut(s)	80
FaiI	YATR	4 cut(s)	9, 78, 104, 303
FatI	CATG	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	267, 281
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	2 cut(s)	267, 281
GlaI	GCGC	3 cut(s)	178, 255, 284
GluI	GCNGC	2 cut(s)	267, 281
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	65, 311
HhaI	GCGC	3 cut(s)	179, 256, 285
Hin1I	GRCGYC	2 cut(s)	177, 189
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	3 cut(s)	177, 254, 283
HinP1I	GCGC	3 cut(s)	177, 254, 283
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	2 cut(s)	140, 194
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	273
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	3 cut(s)	221, 226, 270
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	2 cut(s)	177, 189
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	3 cut(s)	177, 254, 283
KasI	GGCGCC	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	304
LpnPI	CCDG	8 cut(s)	57, 65, 69, 81, 104, 131, 231, 293
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	1 cut(s)	48
MaeII	ACGT	1 cut(s)	189
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	1 cut(s)	189
MluCI	AATT	2 cut(s)	31, 241
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	3 cut(s)	55, 75, 216
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	216
NarI	GGCGCC	1 cut(s)	177
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	2 cut(s)	66, 178
PceI	AGGCCT	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	268, 282
PleI	GAGTC	1 cut(s)	188
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	188
PsiI	TTATAA	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	66, 178
PspPI	GGNCC	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	42
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	267, 281
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	64
SbfI	CCTGCAGG	1 cut(s)	73
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	119
SdaI	CCTGCAGG	1 cut(s)	73
SetI	ASST	7 cut(s)	24, 54, 76, 109, 192, 227, 282
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	69
SfoI	GGCGCC	1 cut(s)	178
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse8387I	CCTGCAGG	1 cut(s)	73
Sse9I	AATT	2 cut(s)	31, 241
SseBI	AGGCCT	1 cut(s)	311
SsiI	CCGC	1 cut(s)	266
SspDI	GGCGCC	1 cut(s)	176
StuI	AGGCCT	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	172
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	31, 241
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseI	GCWGC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	14
XapI	RAATTY	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	192
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.