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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g05721 |
| rosa_chinensis | RchiOBHm_Chr1g0343511 |
| rosa_laevigata | RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661 |
| rosa_multiflora | Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460 |
| rosa_samantha | Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 9, 402 |
| AccI | GTMKAC | 1 cut(s) | 402 |
| AccII | CGCG | 4 cut(s) | 93, 114, 135, 408 |
| AciI | CCGC | 8 cut(s) | 27, 91, 93, 96, 114, 135, 219, 406 |
| AcsI | RAATTY | 1 cut(s) | 187 |
| AcyI | GRCGYC | 2 cut(s) | 6, 399 |
| AdeI | CACNNNGTG | 1 cut(s) | 247 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 96 |
| AgsI | TTSAA | 2 cut(s) | 173, 394 |
| AluBI | AGCT | 4 cut(s) | 58, 206, 283, 415 |
| AluI | AGCT | 4 cut(s) | 58, 206, 283, 415 |
| AoxI | GGCC | 1 cut(s) | 387 |
| ApoI | RAATTY | 1 cut(s) | 187 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 251, 283 |
| AspLEI | GCGC | 2 cut(s) | 379, 448 |
| AsuHPI | GGTGA | 6 cut(s) | 128, 154, 183, 233, 323, 347 |
| BaeGI | GKGCMC | 1 cut(s) | 91 |
| BbsI | GAAGAC | 1 cut(s) | 465 |
| BfaI | CTAG | 4 cut(s) | 129, 207, 329, 458 |
| BisI | GCNGC | 2 cut(s) | 94, 136 |
| BlsI | GCNGC | 2 cut(s) | 95, 137 |
| BoxI | GACNNNNGTC | 1 cut(s) | 129 |
| BpiI | GAAGAC | 1 cut(s) | 465 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 110, 142, 401, 433 |
| BpmI | CTGGAG | 1 cut(s) | 403 |
| Bsa29I | ATCGAT | 1 cut(s) | 479 |
| BsaAI | YACGTR | 1 cut(s) | 325 |
| BsaHI | GRCGYC | 2 cut(s) | 6, 399 |
| BsaJI | CCNNGG | 1 cut(s) | 91 |
| BsaWI | WCCGGW | 1 cut(s) | 80 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 96 |
| Bse1I | ACTGG | 2 cut(s) | 214, 420 |
| BseCI | ATCGAT | 1 cut(s) | 479 |
| BseDI | CCNNGG | 1 cut(s) | 91 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 96 |
| BseMII | CTCAG | 1 cut(s) | 60 |
| BseNI | ACTGG | 2 cut(s) | 214, 420 |
| BseRI | GAGGAG | 1 cut(s) | 275 |
| BseSI | GKGCMC | 1 cut(s) | 91 |
| Bsh1236I | CGCG | 4 cut(s) | 93, 114, 135, 408 |
| Bsh1285I | CGRYCG | 1 cut(s) | 406 |
| BshFI | GGCC | 1 cut(s) | 389 |
| BshVI | ATCGAT | 1 cut(s) | 479 |
| BsiEI | CGRYCG | 1 cut(s) | 406 |
| BsiSI | CCGG | 1 cut(s) | 81 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 96 |
| BsnI | GGCC | 1 cut(s) | 389 |
| Bsp1286I | GDGCHC | 1 cut(s) | 91 |
| BspACI | CCGC | 8 cut(s) | 27, 91, 93, 96, 114, 135, 219, 406 |
| BspANI | GGCC | 1 cut(s) | 389 |
| BspCNI | CTCAG | 1 cut(s) | 61 |
| BspDI | ATCGAT | 1 cut(s) | 479 |
| BspFNI | CGCG | 4 cut(s) | 93, 114, 135, 408 |
| BsrI | ACTGG | 2 cut(s) | 214, 420 |
| BssECI | CCNNGG | 1 cut(s) | 91 |
| BssNI | GRCGYC | 2 cut(s) | 6, 399 |
| BstACI | GRCGYC | 2 cut(s) | 6, 399 |
| BstBAI | YACGTR | 1 cut(s) | 325 |
| BstC8I | GCNNGC | 2 cut(s) | 27, 91 |
| BstDEI | CTNAG | 1 cut(s) | 69 |
| BstDSI | CCRYGG | 1 cut(s) | 91 |
| BstEII | GGTNACC | 1 cut(s) | 335 |
| BstFNI | CGCG | 4 cut(s) | 93, 114, 135, 408 |
| BstHHI | GCGC | 2 cut(s) | 379, 448 |
| BstMCI | CGRYCG | 1 cut(s) | 406 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 452 |
| BstNSI | RCATGY | 1 cut(s) | 366 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 129 |
| BstPI | GGTNACC | 1 cut(s) | 335 |
| BstSLI | GKGCMC | 1 cut(s) | 91 |
| BstUI | CGCG | 4 cut(s) | 93, 114, 135, 408 |
| BstV2I | GAAGAC | 1 cut(s) | 465 |
| Bsu15I | ATCGAT | 1 cut(s) | 479 |
| BsuRI | GGCC | 1 cut(s) | 389 |
| BsuTUI | ATCGAT | 1 cut(s) | 479 |
| BtgI | CCRYGG | 1 cut(s) | 91 |
| Cac8I | GCNNGC | 2 cut(s) | 27, 91 |
| CfoI | GCGC | 2 cut(s) | 379, 448 |
| Cfr42I | CCGCGG | 1 cut(s) | 94 |
| ClaI | ATCGAT | 1 cut(s) | 479 |
| CviAII | CATG | 1 cut(s) | 363 |
| CviJI | RGCY | 7 cut(s) | 58, 206, 251, 283, 389, 415, 512 |
| CviKI_1 | RGCY | 7 cut(s) | 58, 206, 251, 283, 389, 415, 512 |
| DdeI | CTNAG | 1 cut(s) | 69 |
| DraIII | CACNNNGTG | 1 cut(s) | 247 |
| Eco91I | GGTNACC | 1 cut(s) | 335 |
| EcoO65I | GGTNACC | 1 cut(s) | 335 |
| EcoRI | GAATTC | 1 cut(s) | 187 |
| FaeI | CATG | 1 cut(s) | 366 |
| FaiI | YATR | 3 cut(s) | 364, 431, 497 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 272, 304 |
| FatI | CATG | 1 cut(s) | 362 |
| FauI | CCCGC | 3 cut(s) | 34, 89, 98 |
| FblI | GTMKAC | 1 cut(s) | 402 |
| Fnu4HI | GCNGC | 2 cut(s) | 94, 136 |
| Fsp4HI | GCNGC | 2 cut(s) | 94, 136 |
| FspBI | CTAG | 4 cut(s) | 129, 207, 329, 458 |
| GlaI | GCGC | 2 cut(s) | 378, 447 |
| GluI | GCNGC | 2 cut(s) | 94, 136 |
| GsuI | CTGGAG | 1 cut(s) | 403 |
| HaeIII | GGCC | 1 cut(s) | 389 |
| HapII | CCGG | 1 cut(s) | 81 |
| HhaI | GCGC | 2 cut(s) | 379, 448 |
| Hin1I | GRCGYC | 2 cut(s) | 6, 399 |
| Hin1II | CATG | 1 cut(s) | 366 |
| Hin6I | GCGC | 2 cut(s) | 377, 446 |
| HinP1I | GCGC | 2 cut(s) | 377, 446 |
| HincII | GTYRAC | 2 cut(s) | 124, 403 |
| HindII | GTYRAC | 2 cut(s) | 124, 403 |
| HinfI | GANTC | 2 cut(s) | 125, 317 |
| HpaII | CCGG | 1 cut(s) | 81 |
| HphI | GGTGA | 6 cut(s) | 128, 154, 183, 233, 323, 347 |
| Hpy166II | GTNNAC | 2 cut(s) | 124, 403 |
| Hpy188I | TCNGA | 2 cut(s) | 235, 517 |
| Hpy188III | TCNNGA | 2 cut(s) | 153, 184 |
| Hpy8I | GTNNAC | 2 cut(s) | 124, 403 |
| Hpy99I | CGWCG | 2 cut(s) | 271, 404 |
| HpyAV | CCTTC | 3 cut(s) | 33, 140, 310 |
| HpyCH4IV | ACGT | 3 cut(s) | 6, 324, 399 |
| HpyCH4V | TGCA | 1 cut(s) | 466 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 452 |
| HpyF3I | CTNAG | 1 cut(s) | 69 |
| HpySE526I | ACGT | 3 cut(s) | 6, 324, 399 |
| Hsp92I | GRCGYC | 2 cut(s) | 6, 399 |
| Hsp92II | CATG | 1 cut(s) | 366 |
| HspAI | GCGC | 2 cut(s) | 377, 446 |
| KspI | CCGCGG | 1 cut(s) | 94 |
| LmnI | GCTCC | 1 cut(s) | 288 |
| LpnPI | CCDG | 4 cut(s) | 94, 179, 227, 433 |
| MaeI | CTAG | 4 cut(s) | 129, 207, 329, 458 |
| MaeII | ACGT | 3 cut(s) | 6, 324, 399 |
| MaeIII | GTNAC | 2 cut(s) | 209, 335 |
| MboII | GAAGA | 1 cut(s) | 465 |
| MhlI | GDGCHC | 1 cut(s) | 91 |
| MluCI | AATT | 3 cut(s) | 187, 222, 450 |
| MlyI | GAGTC | 2 cut(s) | 119, 311 |
| MmeI | TCCRAC | 1 cut(s) | 258 |
| MnlI | CCTC | 9 cut(s) | 58, 64, 112, 204, 241, 296, 325, 352, 523 |
| MseI | TTAA | 2 cut(s) | 18, 278 |
| MspA1I | CMGCKG | 1 cut(s) | 93 |
| MspI | CCGG | 1 cut(s) | 81 |
| MvnI | CGCG | 4 cut(s) | 93, 114, 135, 408 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 452 |
| NlaIII | CATG | 1 cut(s) | 366 |
| NmuCI | GTSAC | 2 cut(s) | 209, 335 |
| NspI | RCATGY | 1 cut(s) | 366 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 405 |
| PkrI | GCNGC | 2 cut(s) | 95, 137 |
| PleI | GAGTC | 2 cut(s) | 119, 311 |
| PpsI | GAGTC | 2 cut(s) | 119, 311 |
| Ppu21I | YACGTR | 1 cut(s) | 325 |
| PshAI | GACNNNNGTC | 1 cut(s) | 129 |
| PspEI | GGTNACC | 1 cut(s) | 335 |
| SacII | CCGCGG | 1 cut(s) | 94 |
| SalI | GTCGAC | 1 cut(s) | 401 |
| SaqAI | TTAA | 2 cut(s) | 18, 278 |
| SatI | GCNGC | 2 cut(s) | 94, 136 |
| SchI | GAGTC | 2 cut(s) | 119, 311 |
| SduI | GDGCHC | 1 cut(s) | 91 |
| Sfr303I | CCGCGG | 1 cut(s) | 94 |
| SgrBI | CCGCGG | 1 cut(s) | 94 |
| Sse9I | AATT | 3 cut(s) | 187, 222, 450 |
| SsiI | CCGC | 8 cut(s) | 27, 91, 93, 96, 114, 135, 219, 406 |
| SspMI | CTAG | 4 cut(s) | 129, 207, 329, 458 |
| TaiI | ACGT | 3 cut(s) | 9, 327, 402 |
| TaqI | TCGA | 3 cut(s) | 351, 402, 479 |
| TasI | AATT | 3 cut(s) | 187, 222, 450 |
| TauI | GCSGC | 2 cut(s) | 96, 138 |
| Tru1I | TTAA | 2 cut(s) | 18, 278 |
| Tru9I | TTAA | 2 cut(s) | 18, 278 |
| TseFI | GTSAC | 2 cut(s) | 209, 335 |
| Tsp45I | GTSAC | 2 cut(s) | 209, 335 |
| TspDTI | ATGAA | 2 cut(s) | 446, 465 |
| XapI | RAATTY | 1 cut(s) | 187 |
| XceI | RCATGY | 1 cut(s) | 366 |
| XmiI | GTMKAC | 1 cut(s) | 402 |
| XspI | CTAG | 4 cut(s) | 129, 207, 329, 458 |
| ZraI | GACGTC | 2 cut(s) | 7, 400 |