Rh7BG352700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003693
Physical Location & Seq
Reverse (-)
36855260 .. 36855637
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG352700.1

Sequence Viewer

Length: 378 bp
ATGGACATCAAGCGTGTTAAGTTGCCCGCACCACAAGGAAGGAAATTCACCAAGAAGCCGAAACTGACCGAGGATAGTACTGGAAGTGCACGCGGCGGATTTGAGAACATTCGTGGTGAGGCTGAATCCAATCGCGGTGACAAGGAAGCTTCGAAAACACTCTCCCTGCCTCAAATCATTCTCCCGAATTTACCACACAAGTCAACTAGTGACCACTTAGCGATTTCTCTCTCTGACACCCGAATGCTACGCCGTCAAACTCGAAGCGCCTTTTACAAATCACATTCCCTAAGGATGATGGCTCTTACATGCGGGAGGGTGACCCAATTGCCTTCGATAAAGATACGTGTTTGGCAGTGGCGCAAGCCTTGGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.25

Weight (kDa)

11.0

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 93, 135
AciI CCGC 5 cut(s) 27, 93, 96, 135, 312
AcsI RAATTY 2 cut(s) 44, 187
AfaI GTAC 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 346
AhlI ACTAGT 1 cut(s) 206
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
Alw21I GWGCWC 1 cut(s) 91
Alw44I GTGCAC 1 cut(s) 87
AoxI GGCC 1 cut(s) 371
ApaLI GTGCAC 1 cut(s) 87
ApoI RAATTY 2 cut(s) 44, 187
AspLEI GCGC 2 cut(s) 269, 363
AspS9I GGNCC 1 cut(s) 372
AsuHPI GGTGA 4 cut(s) 40, 128, 149, 331
AsuII TTCGAA 1 cut(s) 152
AxyI CCTNAGG 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 1 cut(s) 292
BceAI ACGGC 1 cut(s) 237
BcuI ACTAGT 1 cut(s) 206
BfaI CTAG 1 cut(s) 207
BfoI RGCGCY 1 cut(s) 270
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
BmcAI AGTACT 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 152
BsaAI YACGTR 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 69, 368
Bse1I ACTGG 1 cut(s) 85
Bse21I CCTNAGG 1 cut(s) 290
BseDI CCNNGG 2 cut(s) 69, 368
BseGI GGATG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 91
Bsh1236I CGCG 2 cut(s) 93, 135
BshFI GGCC 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 249
BsnI GGCC 1 cut(s) 373
Bsp119I TTCGAA 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 91
BspACI CCGC 5 cut(s) 27, 93, 96, 135, 312
BspANI GGCC 1 cut(s) 373
BspFNI CGCG 2 cut(s) 93, 135
BspT104I TTCGAA 1 cut(s) 152
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 69, 368
BssT1I CCWWGG 1 cut(s) 368
BstBAI YACGTR 1 cut(s) 347
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 3 cut(s) 27, 91, 365
BstDEI CTNAG 2 cut(s) 217, 290
BstEII GGTNACC 1 cut(s) 319
BstF5I GGATG 1 cut(s) 300
BstFNI CGCG 2 cut(s) 93, 135
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 2 cut(s) 269, 363
BstNSI RCATGY 1 cut(s) 312
BstPI GGTNACC 1 cut(s) 319
BstSLI GKGCMC 1 cut(s) 91
BstUI CGCG 2 cut(s) 93, 135
Bsu36I CCTNAGG 1 cut(s) 290
BsuRI GGCC 1 cut(s) 373
BtsCI GGATG 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 362
Cac8I GCNNGC 3 cut(s) 27, 91, 365
CfoI GCGC 2 cut(s) 269, 363
Cfr13I GGNCC 1 cut(s) 372
Csp6I GTAC 1 cut(s) 78
CviAII CATG 1 cut(s) 309
CviJI RGCY 6 cut(s) 58, 122, 149, 302, 367, 373
CviKI_1 RGCY 6 cut(s) 58, 122, 149, 302, 367, 373
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 2 cut(s) 217, 290
EciI GGCGGA 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 368
Eco81I CCTNAGG 1 cut(s) 290
Eco91I GGTNACC 1 cut(s) 319
EcoO65I GGTNACC 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 1 cut(s) 312
FaiI YATR 1 cut(s) 310
FatI CATG 1 cut(s) 308
FauI CCCGC 2 cut(s) 34, 305
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 1 cut(s) 307
Fsp4HI GCNGC 1 cut(s) 94
FspBI CTAG 1 cut(s) 207
GlaI GCGC 2 cut(s) 268, 362
GluI GCNGC 1 cut(s) 94
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 1 cut(s) 373
HhaI GCGC 2 cut(s) 269, 363
Hin1II CATG 1 cut(s) 312
Hin6I GCGC 2 cut(s) 267, 361
HinP1I GCGC 2 cut(s) 267, 361
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 1 cut(s) 125
HphI GGTGA 4 cut(s) 40, 128, 149, 331
Hpy166II GTNNAC 2 cut(s) 89, 204
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 2 cut(s) 89, 204
HpyAV CCTTC 2 cut(s) 33, 342
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 1 cut(s) 89
HpyF3I CTNAG 2 cut(s) 217, 290
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 1 cut(s) 312
HspAI GCGC 2 cut(s) 267, 361
LpnPI CCDG 2 cut(s) 66, 179
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 3 cut(s) 137, 209, 319
MfeI CAATTG 1 cut(s) 326
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 3 cut(s) 44, 187, 326
MnlI CCTC 4 cut(s) 64, 112, 180, 309
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 242
MunI CAATTG 1 cut(s) 326
Mva1269I GAATGC 1 cut(s) 249
MvnI CGCG 2 cut(s) 93, 135
NlaIII CATG 1 cut(s) 312
NmuCI GTSAC 3 cut(s) 137, 209, 319
NspI RCATGY 1 cut(s) 312
NspV TTCGAA 1 cut(s) 152
PctI GAATGC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 95
Ppu21I YACGTR 1 cut(s) 347
PspEI GGTNACC 1 cut(s) 319
PspPI GGNCC 1 cut(s) 372
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 94
Sau96I GGNCC 1 cut(s) 372
ScaI AGTACT 1 cut(s) 79
SduI GDGCHC 1 cut(s) 91
SetI ASST 2 cut(s) 151, 349
SfuI TTCGAA 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 242
SpeI ACTAGT 1 cut(s) 206
Sse9I AATT 3 cut(s) 44, 187, 326
SsiI CCGC 5 cut(s) 27, 93, 96, 135, 312
SspMI CTAG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 368
TaiI ACGT 1 cut(s) 349
TaqI TCGA 3 cut(s) 152, 262, 335
TaqII GACCGA 1 cut(s) 83
TasI AATT 3 cut(s) 44, 187, 326
TatI WGTACW 1 cut(s) 77
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 362
TseFI GTSAC 3 cut(s) 137, 209, 319
Tsp45I GTSAC 3 cut(s) 137, 209, 319
TspRI CASTG 1 cut(s) 362
VneI GTGCAC 1 cut(s) 87
XapI RAATTY 2 cut(s) 44, 187
XceI RCATGY 1 cut(s) 312
XspI CTAG 1 cut(s) 207
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.