Rroxscaffold_6G00389460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003693
Physical Location & Seq
Forward (+)
3045715 .. 3046765
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389460.1

Sequence Viewer

Length: 651 bp
ATGGTCCAAGGCGAATGGACTGCGCCAGAAATTCCCACCATCATCCCTAAAGATTTTTCCAAGCGCACTACGTATGTTCCTGTTTCGATGGATTCCTTCCTCAACAAGAAACGCATCACTTGGATAAAAGAACATTTGCTGCACCGAAAATGGAGTGCTGCCCATTTTGCCTCTAAGGTGGAGCTTGACGAAATCTCGAAATCTCAGGCAGGAGCGATTTATTTTTGCTGTCTTCAATCTTCAGATCCCAACCTATCGGGAGAAGAACTACTTCTACAGCAAGCCTCAAGATCGAAGAGGAGTTGGAGAAAAAAAGAAAGTGTCAGGATGGACATCAAGCATGTTAAGTTGCCCGCGCCACAAGGAAGAAAATCCGCCAAGAAGCCGAAACTGACTGAAGGTAGTATCGGAAATGCCTGCAGCAGATTTGAGAAGGTTCGCGGTGAGGCTGAATCCAGTTGTGACCACAAGGAAACTTCGGAAACACTCTCCCTGCCTCAAACCAATCTCCTGAATTCACCACGCAAGTCAGCTAGTGACCACTCAACGATTTTCCTCTCAGACACTAACTTTGTGGCTCGCCCAAATGTTTCGTTATCAAACTTGAAGCCCACTTTACAGTTCACCTTTCCAAAGGGTGATGACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.29

Weight (kDa)

9.51

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 356, 441
AciI CCGC 3 cut(s) 354, 375, 441
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 2 cut(s) 30, 514
AcuI CTGAAG 2 cut(s) 225, 417
AgsI TTSAA 2 cut(s) 236, 607
AluBI AGCT 2 cut(s) 184, 533
AluI AGCT 2 cut(s) 184, 533
AlwI GGATC 1 cut(s) 239
ApeKI GCWGC 3 cut(s) 139, 158, 420
ApoI RAATTY 2 cut(s) 30, 514
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
Asp700I GAANNNNTTC 1 cut(s) 270
AspLEI GCGC 3 cut(s) 25, 66, 358
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 4 cut(s) 455, 510, 616, 650
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 224
BbvI GCAGC 3 cut(s) 126, 145, 432
BccI CCATC 3 cut(s) 47, 82, 322
BcgI CGANNNNNNTGC 1 cut(s) 36
BfaI CTAG 1 cut(s) 534
BfmI CTRYAG 2 cut(s) 275, 418
BisI GCNGC 3 cut(s) 140, 159, 421
BlsI GCNGC 3 cut(s) 141, 160, 422
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmsI GCATC 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 7
Bse1I ACTGG 1 cut(s) 456
Bse8I GATNNNNATC 1 cut(s) 332
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 2 cut(s) 42, 333
BseJI GATNNNNATC 1 cut(s) 332
BseMII CTCAG 2 cut(s) 218, 573
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 1 cut(s) 313
BseXI GCAGC 3 cut(s) 126, 145, 432
BsgI GTGCAG 1 cut(s) 125
Bsh1236I CGCG 2 cut(s) 356, 441
Bsp143I GATC 2 cut(s) 244, 290
BspACI CCGC 3 cut(s) 354, 375, 441
BspCNI CTCAG 2 cut(s) 217, 572
BspFNI CGCG 2 cut(s) 356, 441
BspMAI CTGCAG 1 cut(s) 422
BspPI GGATC 1 cut(s) 239
BsrI ACTGG 1 cut(s) 456
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 2 cut(s) 244, 290
BssT1I CCWWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 621
Bst6I CTCTTC 1 cut(s) 290
BstBAI YACGTR 1 cut(s) 72
BstC8I GCNNGC 4 cut(s) 282, 354, 418, 580
BstDEI CTNAG 4 cut(s) 174, 204, 559, 648
BstF5I GGATG 2 cut(s) 42, 333
BstFNI CGCG 2 cut(s) 356, 441
BstHHI GCGC 3 cut(s) 25, 66, 358
BstKTI GATC 2 cut(s) 247, 293
BstMBI GATC 2 cut(s) 244, 290
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 344
BstSFI CTRYAG 2 cut(s) 275, 418
BstSNI TACGTA 1 cut(s) 72
BstUI CGCG 2 cut(s) 356, 441
BstV1I GCAGC 3 cut(s) 126, 145, 432
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BtsCI GGATG 2 cut(s) 42, 333
Cac8I GCNNGC 4 cut(s) 282, 354, 418, 580
CfoI GCGC 3 cut(s) 25, 66, 358
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 341
CviJI RGCY 7 cut(s) 184, 284, 385, 449, 533, 578, 610
CviKI_1 RGCY 7 cut(s) 184, 284, 385, 449, 533, 578, 610
DdeI CTNAG 4 cut(s) 174, 204, 559, 648
DpnI GATC 2 cut(s) 246, 292
DpnII GATC 2 cut(s) 244, 290
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
EciI GGCGGA 1 cut(s) 364
Eco105I TACGTA 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 2 cut(s) 225, 417
EcoRI GAATTC 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 7
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 75, 342
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FatI CATG 1 cut(s) 340
FauI CCCGC 1 cut(s) 361
Fnu4HI GCNGC 3 cut(s) 140, 159, 421
FokI GGATG 2 cut(s) 29, 340
Fsp4HI GCNGC 3 cut(s) 140, 159, 421
FspBI CTAG 1 cut(s) 534
GlaI GCGC 3 cut(s) 24, 65, 357
GluI GCNGC 3 cut(s) 140, 159, 421
HhaI GCGC 3 cut(s) 25, 66, 358
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 3 cut(s) 23, 64, 356
HinP1I GCGC 3 cut(s) 23, 64, 356
HinfI GANTC 3 cut(s) 92, 452, 644
HphI GGTGA 4 cut(s) 455, 510, 616, 650
Hpy166II GTNNAC 1 cut(s) 624
Hpy188I TCNGA 4 cut(s) 244, 410, 481, 562
Hpy188III TCNNGA 5 cut(s) 196, 258, 288, 325, 511
Hpy8I GTNNAC 1 cut(s) 624
HpyAV CCTTC 3 cut(s) 106, 392, 427
HpyCH4III ACNGT 1 cut(s) 621
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 142, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 4 cut(s) 174, 204, 559, 648
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 3 cut(s) 23, 64, 356
Kzo9I GATC 2 cut(s) 244, 290
LmnI GCTCC 2 cut(s) 181, 212
LpnPI CCDG 9 cut(s) 39, 93, 191, 195, 310, 430, 469, 506, 524
Lsp1109I GCAGC 3 cut(s) 126, 145, 432
LweI GCATC 1 cut(s) 123
MaeI CTAG 1 cut(s) 534
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 461, 536
MalI GATC 2 cut(s) 246, 292
MboI GATC 2 cut(s) 244, 290
MboII GAAGA 5 cut(s) 224, 231, 275, 307, 378
MflI RGATCY 1 cut(s) 244
MluCI AATT 2 cut(s) 30, 514
MlyI GAGTC 1 cut(s) 638
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 7 cut(s) 110, 181, 291, 295, 439, 507, 566
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 1 cut(s) 345
MvnI CGCG 2 cut(s) 356, 441
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 2 cut(s) 244, 290
NlaIII CATG 1 cut(s) 344
NmuCI GTSAC 2 cut(s) 461, 536
NspI RCATGY 1 cut(s) 344
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 92, 452
PkrI GCNGC 3 cut(s) 141, 160, 422
PleI GAGTC 1 cut(s) 638
PpsI GAGTC 1 cut(s) 638
Ppu21I YACGTR 1 cut(s) 72
PspPI GGNCC 1 cut(s) 4
PsrI GAACNNNNNNTAC 2 cut(s) 258, 290
PstI CTGCAG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 244
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 3 cut(s) 140, 159, 421
Sau3AI GATC 2 cut(s) 244, 290
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 638
SetI ASST 8 cut(s) 74, 180, 186, 255, 403, 438, 535, 629
SfaNI GCATC 1 cut(s) 123
SfcI CTRYAG 2 cut(s) 275, 418
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
SnaBI TACGTA 1 cut(s) 72
Sse9I AATT 2 cut(s) 30, 514
SsiI CCGC 3 cut(s) 354, 375, 441
SspMI CTAG 1 cut(s) 534
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 1 cut(s) 621
TaiI ACGT 1 cut(s) 74
TaqI TCGA 3 cut(s) 86, 197, 293
TasI AATT 2 cut(s) 30, 514
TfiI GAWTC 2 cut(s) 92, 452
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TseFI GTSAC 2 cut(s) 461, 536
TseI GCWGC 3 cut(s) 139, 158, 420
Tsp45I GTSAC 2 cut(s) 461, 536
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 30, 514
XceI RCATGY 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.