Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003693

Physical Location & Seq

Genomic Coordinates Reverse (-)

37889000 .. 37889603

Gene Structure 604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029386

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCCTTCTAAGGACCGCAAGGTTCAGCTTAATTTCAGCATCTGCGCAGACTTGCCCGACGAGACCCCTGCAGGTCGTGGGAGGACAAAAGGGAAGGAAGCCATGGCTGACATGAGTCCACAATCCAAAGCGTCAAATGCCCCAATCCCAATTTTTTCTGATGACTCTTCTGATCATTCCCGATCTCGATCGCTTGATATCTATTTCAACGATCTCAAAGCTGAGGTCGCGACGATGAAAAAGGGGTACGAGCAGGTTGTTGAGGAGGCTAGGAATCTTCAGCGAAGAGAAAGATCTACAGATGGTATTCAAGCAACCGCTTTGGAAAAGGGGTACCGCCGAGGCATTCATGCTTACCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.46

Weight (kDa)

9.1

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05721
rosa_chinensis	RchiOBHm_Chr1g0343511
rosa_laevigata	RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661
rosa_multiflora	Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004
rosa_roxburghii	Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460
rosa_samantha	Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	46
Acc36I	ACCTGC	2 cut(s)	62, 244
Acc65I	GGTACC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	333
AccII	CGCG	1 cut(s)	230
AciI	CCGC	3 cut(s)	16, 318, 337
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	2 cut(s)	248, 335
AgsI	TTSAA	2 cut(s)	208, 311
AluBI	AGCT	2 cut(s)	28, 221
AluI	AGCT	2 cut(s)	28, 221
Alw26I	GTCTC	1 cut(s)	56
AlwNI	CAGNNNCTG	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
Asp718I	GGTACC	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	333
BbvCI	CCTCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	296
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	2 cut(s)	69, 297
BfuAI	ACCTGC	2 cut(s)	62, 244
BglII	AGATCT	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	335
BmsI	GCATC	1 cut(s)	48
BoxI	GACNNNNGTC	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	102, 340
Bse8I	GATNNNNATC	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	102, 340
BseJI	GATNNNNATC	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	333
BsiEI	CGRYCG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	345
Bso31I	GGTCTC	1 cut(s)	56
Bsp143I	GATC	5 cut(s)	172, 182, 188, 211, 293
Bsp19I	CCATGG	1 cut(s)	102
Bsp68I	TCGCGA	1 cut(s)	230
BspACI	CCGC	3 cut(s)	16, 318, 337
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	335
BspMAI	CTGCAG	1 cut(s)	73
BspMI	ACCTGC	2 cut(s)	62, 244
BspT107I	GGYRCC	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	102, 340
BssMI	GATC	5 cut(s)	172, 182, 188, 211, 293
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	2 cut(s)	172, 280
BstDEI	CTNAG	2 cut(s)	9, 222
BstDSI	CCRYGG	1 cut(s)	102
BstFNI	CGCG	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	5 cut(s)	175, 185, 191, 214, 296
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	5 cut(s)	172, 182, 188, 211, 293
BstMCI	CGRYCG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 227
BstPAI	GACNNNNGTC	1 cut(s)	114
BstSFI	CTRYAG	2 cut(s)	69, 297
BstUI	CGCG	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	102
BtuMI	TCGCGA	1 cut(s)	230
BveI	ACCTGC	2 cut(s)	62, 244
CaiI	CAGNNNCTG	1 cut(s)	42
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	13
CseI	GACGC	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	247, 334
CviAII	CATG	3 cut(s)	103, 112, 350
CviJI	RGCY	5 cut(s)	28, 101, 107, 221, 269
CviKI_1	RGCY	5 cut(s)	28, 101, 107, 221, 269
CviQI	GTAC	2 cut(s)	247, 334
DdeI	CTNAG	2 cut(s)	9, 222
DpnI	GATC	5 cut(s)	174, 184, 190, 213, 295
DpnII	GATC	5 cut(s)	172, 182, 188, 211, 293
Eam1104I	CTCTTC	2 cut(s)	172, 280
EarI	CTCTTC	2 cut(s)	172, 280
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	263
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	3 cut(s)	106, 115, 353
FaiI	YATR	3 cut(s)	104, 113, 351
FatI	CATG	3 cut(s)	102, 111, 349
FbaI	TGATCA	1 cut(s)	172
FspBI	CTAG	1 cut(s)	270
FspI	TGCGCA	1 cut(s)	46
GlaI	GCGC	1 cut(s)	46
HgaI	GACGC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	3 cut(s)	106, 115, 353
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	3 cut(s)	115, 164, 274
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	2 cut(s)	160, 172
Hpy188III	TCNNGA	3 cut(s)	180, 186, 229
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	2 cut(s)	62, 235
HpyAV	CCTTC	2 cut(s)	15, 88
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 227
HpyF3I	CTNAG	2 cut(s)	9, 222
Hsp92II	CATG	3 cut(s)	106, 115, 353
HspAI	GCGC	1 cut(s)	45
KpnI	GGTACC	1 cut(s)	337
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	5 cut(s)	172, 182, 188, 211, 293
LpnPI	CCDG	3 cut(s)	57, 81, 239
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	1 cut(s)	270
MalI	GATC	5 cut(s)	174, 184, 190, 213, 295
MboI	GATC	5 cut(s)	172, 182, 188, 211, 293
MboII	GAAGA	3 cut(s)	159, 269, 297
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	2 cut(s)	31, 150
MlyI	GAGTC	2 cut(s)	124, 158
MnlI	CCTC	5 cut(s)	75, 217, 256, 259, 335
MseI	TTAA	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	345
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	137, 227
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	5 cut(s)	172, 182, 188, 211, 293
NlaIII	CATG	3 cut(s)	106, 115, 353
NlaIV	GGNNCC	1 cut(s)	335
NruI	TCGCGA	1 cut(s)	230
NsbI	TGCGCA	1 cut(s)	46
PctI	GAATGC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	274
Ple19I	CGATCG	1 cut(s)	191
PleI	GAGTC	2 cut(s)	123, 158
PpsI	GAGTC	2 cut(s)	123, 158
PshAI	GACNNNNGTC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	335
PspPI	GGNCC	1 cut(s)	13
PstI	CTGCAG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	293
PvuI	CGATCG	1 cut(s)	191
RruI	TCGCGA	1 cut(s)	230
RsaI	GTAC	2 cut(s)	248, 335
RsaNI	GTAC	2 cut(s)	247, 334
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	5 cut(s)	172, 182, 188, 211, 293
Sau96I	GGNCC	1 cut(s)	13
SbfI	CCTGCAGG	1 cut(s)	73
SchI	GAGTC	2 cut(s)	124, 158
SdaI	CCTGCAGG	1 cut(s)	73
SetI	ASST	6 cut(s)	24, 30, 76, 223, 228, 258
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	2 cut(s)	69, 297
SinI	GGWCC	1 cut(s)	13
Sse8387I	CCTGCAGG	1 cut(s)	73
Sse9I	AATT	2 cut(s)	31, 150
SsiI	CCGC	3 cut(s)	16, 318, 337
SspMI	CTAG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	187
TasI	AATT	2 cut(s)	31, 150
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	251, 338
VpaK11BI	GGWCC	1 cut(s)	13
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.