Rh2AG346100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003693
Physical Location & Seq
Reverse (-)
50918919 .. 50919462
544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG346100.1

Sequence Viewer

Length: 429 bp
ATGTCAGCACTGAAACCGCTCGAACCGACTCTGAATCTACACGCAGTAACAAAGTACCACAGGGGCAGTCTCCGCCGCCTCGAGTCGATCCCCGACATTCTCTATGCAGGGCAAAACAGCGGTCCCCTAACAGTTTCGGGCACCAACCTTCATCAAACCGGTTCACCGTTATCCTCGAAGCCTCATTTGCAACTAACTTTTCCTAAAGAAGATGACTCGTACGTATTAGAGGGAGACCAAATTGTCTTCGACAAAGAGGTGTGCTTGGCTGTGGCCCAAGCTCTAGCCTTGAATCTTGTTGATCACGATAAACTTTCTCATCTGAGTTTTAGGGACCTCGCTGCGCAACTTGTCATATCCTTGCAGTCGGCCTCTTCAATGACGCAGCACATTGTGATGAGGACAGACGTCGCCGAATCAGTGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.5

Weight (kDa)

5.92

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AatII GACGTC 1 cut(s) 411
Acc16I TGCGCA 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 140
AccBSI CCGCTC 1 cut(s) 19
AciI CCGC 4 cut(s) 17, 73, 76, 120
AclWI GGATC 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 408
AdeI CACNNNGTG 1 cut(s) 394
AfaI GTAC 2 cut(s) 56, 221
AgeI ACCGGT 1 cut(s) 158
AgsI TTSAA 2 cut(s) 292, 378
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw26I GTCTC 2 cut(s) 74, 228
AlwI GGATC 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 2 cut(s) 273, 369
ApeKI GCWGC 2 cut(s) 341, 385
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
AsiGI ACCGGT 1 cut(s) 158
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 3 cut(s) 122, 274, 334
AsuHPI GGTGA 1 cut(s) 156
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 2 cut(s) 122, 334
BaeGI GKGCMC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 328, 397
BceAI ACGGC 1 cut(s) 409
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 74, 228
BfaI CTAG 1 cut(s) 284
BisI GCNGC 3 cut(s) 76, 342, 386
BlsI GCNGC 3 cut(s) 77, 343, 387
Bme18I GGWCC 2 cut(s) 122, 334
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 3 cut(s) 122, 274, 334
BmiI GGNNCC 3 cut(s) 124, 142, 335
BoxI GACNNNNGTC 1 cut(s) 407
BpiI GAAGAC 1 cut(s) 238
BsaAI YACGTR 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 408
BsaI GGTCTC 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 158
Bse118I RCCGGY 1 cut(s) 158
BseMII CTCAG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 2 cut(s) 328, 397
BshFI GGCC 2 cut(s) 275, 371
BshNI GGYRCC 1 cut(s) 140
BshTI ACCGGT 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 159
BsiWI CGTACG 1 cut(s) 219
BslFI GGGAC 2 cut(s) 108, 347
BsmAI GTCTC 2 cut(s) 74, 228
BsmFI GGGAC 2 cut(s) 108, 347
BsnI GGCC 2 cut(s) 275, 371
Bso31I GGTCTC 1 cut(s) 228
BsoBI CYCGRG 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 87, 301
BspACI CCGC 4 cut(s) 17, 73, 76, 120
BspANI GGCC 2 cut(s) 275, 371
BspCNI CTCAG 1 cut(s) 315
BspLI GGNNCC 3 cut(s) 124, 142, 335
BspPI GGATC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 228
BsrBI CCGCTC 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssMI GATC 2 cut(s) 87, 301
BssNI GRCGYC 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 133, 168
Bst6I CTCTTC 1 cut(s) 379
BstACI GRCGYC 1 cut(s) 408
BstBAI YACGTR 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 323
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 2 cut(s) 90, 304
BstMAI GTCTC 2 cut(s) 74, 228
BstMBI GATC 2 cut(s) 87, 301
BstMWI GCNNNNNNNGC 2 cut(s) 72, 187
BstPAI GACNNNNGTC 1 cut(s) 407
BstSLI GKGCMC 1 cut(s) 143
BstSNI TACGTA 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 328, 397
BstV2I GAAGAC 1 cut(s) 238
BsuRI GGCC 2 cut(s) 275, 371
BtsIMutI CAGTG 2 cut(s) 8, 426
CfoI GCGC 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 3 cut(s) 122, 274, 334
CseI GACGC 1 cut(s) 391
Csp6I GTAC 2 cut(s) 55, 220
CspAI ACCGGT 1 cut(s) 158
CviJI RGCY 6 cut(s) 181, 269, 275, 281, 287, 371
CviKI_1 RGCY 6 cut(s) 181, 269, 275, 281, 287, 371
CviQI GTAC 2 cut(s) 55, 220
DdeI CTNAG 1 cut(s) 323
DpnI GATC 2 cut(s) 89, 303
DpnII GATC 2 cut(s) 87, 301
DraIII CACNNNGTG 1 cut(s) 394
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
EciI GGCGGA 1 cut(s) 62
Eco105I TACGTA 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 2 cut(s) 122, 334
Eco88I CYCGRG 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 334
FaiI YATR 2 cut(s) 105, 356
FaqI GGGAC 2 cut(s) 108, 347
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 76, 342, 386
Fsp4HI GCNGC 3 cut(s) 76, 342, 386
FspBI CTAG 1 cut(s) 284
FspI TGCGCA 1 cut(s) 345
GlaI GCGC 1 cut(s) 345
GluI GCNGC 3 cut(s) 76, 342, 386
HaeIII GGCC 2 cut(s) 275, 371
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 391
HhaI GCGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 408
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HinfI GANTC 6 cut(s) 28, 34, 83, 215, 292, 416
HpaII CCGG 1 cut(s) 159
HphI GGTGA 1 cut(s) 156
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 33, 324
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 164
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 133, 168
HpyCH4IV ACGT 2 cut(s) 222, 408
HpyCH4V TGCA 3 cut(s) 107, 190, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 187
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 2 cut(s) 222, 408
Hsp92I GRCGYC 1 cut(s) 408
HspAI GCGC 1 cut(s) 344
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 2 cut(s) 87, 301
LpnPI CCDG 3 cut(s) 46, 93, 172
Lsp1109I GCAGC 2 cut(s) 328, 397
MaeI CTAG 1 cut(s) 284
MaeII ACGT 2 cut(s) 222, 408
MaeIII GTNAC 1 cut(s) 46
MalI GATC 2 cut(s) 89, 303
MbiI CCGCTC 1 cut(s) 19
MboI GATC 2 cut(s) 87, 301
MboII GAAGA 3 cut(s) 221, 238, 366
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 1 cut(s) 240
MlyI GAGTC 3 cut(s) 22, 92, 209
MnlI CCTC 8 cut(s) 89, 184, 192, 223, 250, 347, 382, 393
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 72, 187
NdeII GATC 2 cut(s) 87, 301
NlaIV GGNNCC 3 cut(s) 124, 142, 335
NsbI TGCGCA 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 80
PfeI GAWTC 3 cut(s) 34, 292, 416
Pfl23II CGTACG 1 cut(s) 219
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 3 cut(s) 77, 343, 387
PleI GAGTC 3 cut(s) 22, 91, 209
PpsI GAGTC 3 cut(s) 22, 91, 209
Ppu21I YACGTR 1 cut(s) 223
PpuMI RGGWCCY 1 cut(s) 334
PshAI GACNNNNGTC 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 334
PspLI CGTACG 1 cut(s) 219
PspN4I GGNNCC 3 cut(s) 124, 142, 335
PspPI GGNCC 3 cut(s) 122, 274, 334
PspPPI RGGWCCY 1 cut(s) 334
PspXI VCTCGAGB 1 cut(s) 80
RsaI GTAC 2 cut(s) 56, 221
RsaNI GTAC 2 cut(s) 55, 220
RseI CAYNNNNRTG 1 cut(s) 395
SatI GCNGC 3 cut(s) 76, 342, 386
Sau3AI GATC 2 cut(s) 87, 301
Sau96I GGNCC 3 cut(s) 122, 274, 334
SchI GAGTC 3 cut(s) 22, 92, 209
SduI GDGCHC 1 cut(s) 143
SetI ASST 6 cut(s) 150, 225, 261, 283, 339, 411
Sfr274I CTCGAG 1 cut(s) 80
SinI GGWCC 2 cut(s) 122, 334
SlaI CTCGAG 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SnaBI TACGTA 1 cut(s) 223
Sse9I AATT 1 cut(s) 240
SsiI CCGC 4 cut(s) 17, 73, 76, 120
SspMI CTAG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 133, 168
TaiI ACGT 2 cut(s) 225, 411
TaqI TCGA 5 cut(s) 21, 81, 86, 176, 249
TasI AATT 1 cut(s) 240
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 3 cut(s) 34, 292, 416
TscAI CASTG 2 cut(s) 15, 426
TseI GCWGC 2 cut(s) 341, 385
TspDTI ATGAA 1 cut(s) 140
TspRI CASTG 2 cut(s) 15, 426
VpaK11BI GGWCC 2 cut(s) 122, 334
XhoI CTCGAG 1 cut(s) 80
XspI CTAG 1 cut(s) 284
ZraI GACGTC 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.