Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000335.1

Orthogroup ID

OG0003693

Physical Location & Seq

Genomic Coordinates Reverse (-)

114593 .. 115953

Gene Structure 1361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000335.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgcaaaattttgacaccgctctttctttcttatgtgttgcgtacgttcctatttcggtggattccttcctcgacgaagaacgcatcgcttggataaaacagcacttgctgtcccaaaaatggagtgctaccaactttgcttctaaggtggatcttgaggacgtctcgaaatctcgggcccacgcaatatattctagctatcttcaatctctagatcccaatctatcgggggaagaactacttctacaggttattgagttggaacgcaaattctttattagtgaacgcactccgtctttgtttgcagcaagcctcaataccgaacaagagttggagaaaaaagaaagtgtcaagatggacgtcaggcgtgttaagttgcccgcaccacaaggaaggaaatcctccaagaagctgaaactgactgagggcaataccggaagtgccctcggcgggtttgagaatgttcgcggtgaggttgactcttgtcgcggcaataaggaagcttcagaaacactcacccagcttcaaaccaatctcccgaattcacctcgtaagtcagctagtgaccagtccgcaatttccccctccgacactcaccttgtggcttacccaaatgtttcgtcgtcaaacttaaagctcctcttacaacttaccttcccaaagggtgatgactcttacgtgctagagggtgaccctattgcttttgacaaagaggcatgtttggcggtggcgcaatcgttggccttgaatgacgtcgaccgcgagaagctctccagtttgagtatgaaagatttctcagtgcaaattgctctaggattgcagttgtcttcatcgatgatacaacatctcataatgagaatggaagcctccgaacttcagctatggaaactcatgaaagaagcccgacaggaagctgaagccaatgcgataaaattagaggaaacacgtgtagcatgtaaggtggtcgatgcaaacgagagagaagtcagtgagcttaagacgaagttgggaaatgaaattgccaatagggcaagggaattcaagctgaaccataacaagatcaacaagagctcctgcaagtattatcgcctgggatgggttcagggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

41.27

Weight (kDa)

6.3

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05721
rosa_chinensis	RchiOBHm_Chr1g0343511
rosa_laevigata	RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661
rosa_multiflora	Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004
rosa_roxburghii	Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460
rosa_samantha	Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	165, 363, 756
AccBSI	CCGCTC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	756
AccII	CGCG	3 cut(s)	468, 489, 762
AciI	CCGC	8 cut(s)	18, 381, 450, 468, 489, 573, 725, 760
AclWI	GGATC	2 cut(s)	159, 209
AcsI	RAATTY	4 cut(s)	7, 269, 541, 1037
AcuI	CTGAAG	3 cut(s)	489, 860, 936
AcvI	CACGTG	1 cut(s)	947
AcyI	GRCGYC	3 cut(s)	162, 360, 753
AdeI	CACNNNGTG	1 cut(s)	601
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	3 cut(s)	120, 450, 1096
AflII	CTTAAG	1 cut(s)	995
AflIII	ACRYGT	2 cut(s)	944, 946
AgsI	TTSAA	4 cut(s)	206, 527, 748, 1042
AjnI	CCWGG	1 cut(s)	1089
Alw21I	GWGCWC	1 cut(s)	1073
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	2 cut(s)	159, 209
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	2 cut(s)	177, 741
ApaI	GGGCCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	4 cut(s)	7, 269, 541, 1037
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
Asp700I	GAANNNNTTC	2 cut(s)	240, 791
AspLEI	GCGC	1 cut(s)	733
AspS9I	GGNCC	2 cut(s)	177, 178
AsuHPI	GGTGA	6 cut(s)	482, 508, 537, 587, 677, 701
AvaI	CYCGRG	1 cut(s)	174
BaeGI	GKGCMC	2 cut(s)	181, 445
BanII	GRGCYC	2 cut(s)	181, 1073
BbrPI	CACGTG	1 cut(s)	947
BbsI	GAAGAC	1 cut(s)	819
Bbv12I	GWGCWC	1 cut(s)	1073
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	2 cut(s)	349, 1089
BciT130I	CCWGG	1 cut(s)	1091
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	6 cut(s)	195, 212, 561, 683, 812, 1108
BfmI	CTRYAG	1 cut(s)	245
BfrI	CTTAAG	1 cut(s)	995
BglI	GCCNNNNNGGC	1 cut(s)	1028
BisI	GCNGC	2 cut(s)	306, 490
BlsI	GCNGC	2 cut(s)	307, 491
Bme1390I	CCNGG	1 cut(s)	1091
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	177, 178
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	1091
BmsI	GCATC	2 cut(s)	93, 958
BoxI	GACNNNNGTC	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	819
BplI	GAGNNNNNCTC	6 cut(s)	149, 181, 464, 496, 755, 787
BpmI	CTGGAG	1 cut(s)	757
BpuEI	CTTGAG	1 cut(s)	176
Bsa29I	ATCGAT	1 cut(s)	833
BsaAI	YACGTR	2 cut(s)	679, 947
BsaBI	GATNNNNATC	1 cut(s)	219
BsaHI	GRCGYC	3 cut(s)	162, 360, 753
BsaJI	CCNNGG	2 cut(s)	445, 1090
BsaWI	WCCGGW	1 cut(s)	434
BsaXI	ACNNNNNCTCC	2 cut(s)	1055, 1085
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 450, 1096
Bse1I	ACTGG	2 cut(s)	568, 774
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	1091
BseCI	ATCGAT	1 cut(s)	833
BseDI	CCNNGG	2 cut(s)	445, 1090
BseGI	GGATG	1 cut(s)	1100
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	3 cut(s)	120, 450, 1096
BseMII	CTCAG	2 cut(s)	414, 810
BseNI	ACTGG	2 cut(s)	568, 774
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	2 cut(s)	181, 445
BseXI	GCAGC	1 cut(s)	317
BseYI	CCCAGC	1 cut(s)	519
Bsh1236I	CGCG	3 cut(s)	468, 489, 762
Bsh1285I	CGRYCG	1 cut(s)	760
BshFI	GGCC	2 cut(s)	179, 743
BshVI	ATCGAT	1 cut(s)	833
BsiEI	CGRYCG	1 cut(s)	760
BsiHKAI	GWGCWC	1 cut(s)	1073
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	435
BsiWI	CGTACG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	3 cut(s)	120, 450, 1096
BsmAI	GTCTC	1 cut(s)	169
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	179, 743
BsoBI	CYCGRG	1 cut(s)	174
Bsp120I	GGGCCC	1 cut(s)	177
Bsp1286I	GDGCHC	3 cut(s)	181, 445, 1073
Bsp143I	GATC	3 cut(s)	151, 214, 1059
BspACI	CCGC	8 cut(s)	18, 381, 450, 468, 489, 573, 725, 760
BspANI	GGCC	2 cut(s)	179, 743
BspCNI	CTCAG	2 cut(s)	415, 809
BspDI	ATCGAT	1 cut(s)	833
BspFNI	CGCG	3 cut(s)	468, 489, 762
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	1 cut(s)	179
BspPI	GGATC	2 cut(s)	159, 209
BspTI	CTTAAG	1 cut(s)	995
BsrBI	CCGCTC	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	568, 774
BssECI	CCNNGG	2 cut(s)	445, 1090
BssMI	GATC	3 cut(s)	151, 214, 1059
BssNI	GRCGYC	3 cut(s)	162, 360, 753
Bst2UI	CCWGG	1 cut(s)	1091
BstACI	GRCGYC	3 cut(s)	162, 360, 753
BstAFI	CTTAAG	1 cut(s)	995
BstBAI	YACGTR	2 cut(s)	679, 947
BstC8I	GCNNGC	2 cut(s)	310, 381
BstDEI	CTNAG	3 cut(s)	144, 423, 796
BstEII	GGTNACC	1 cut(s)	689
BstF5I	GGATG	1 cut(s)	1100
BstFNI	CGCG	3 cut(s)	468, 489, 762
BstHHI	GCGC	1 cut(s)	733
BstKTI	GATC	3 cut(s)	154, 217, 1062
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	3 cut(s)	151, 214, 1059
BstMCI	CGRYCG	1 cut(s)	760
BstMWI	GCNNNNNNNGC	2 cut(s)	722, 1028
BstNI	CCWGG	1 cut(s)	1091
BstNSI	RCATGY	2 cut(s)	720, 957
BstPAI	GACNNNNGTC	1 cut(s)	483
BstPI	GGTNACC	1 cut(s)	689
BstSCI	CCNGG	1 cut(s)	1089
BstSFI	CTRYAG	1 cut(s)	245
BstSLI	GKGCMC	2 cut(s)	181, 445
BstUI	CGCG	3 cut(s)	468, 489, 762
BstV1I	GCAGC	1 cut(s)	317
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	2 cut(s)	151, 214
BstYI	RGATCY	2 cut(s)	151, 214
Bsu15I	ATCGAT	1 cut(s)	833
BsuRI	GGCC	2 cut(s)	179, 743
BsuTUI	ATCGAT	1 cut(s)	833
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	1100
BtsIMutI	CAGTG	2 cut(s)	804, 994
Cac8I	GCNNGC	2 cut(s)	310, 381
CciI	TCATGA	1 cut(s)	891
CfoI	GCGC	1 cut(s)	733
Cfr13I	GGNCC	2 cut(s)	177, 178
ClaI	ATCGAT	1 cut(s)	833
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	3 cut(s)	717, 892, 954
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	3 cut(s)	144, 423, 796
DpnI	GATC	3 cut(s)	153, 216, 1061
DpnII	GATC	3 cut(s)	151, 214, 1059
DraIII	CACNNNGTG	1 cut(s)	601
Ecl136II	GAGCTC	1 cut(s)	1071
Eco24I	GRGCYC	2 cut(s)	181, 1073
Eco53kI	GAGCTC	1 cut(s)	1071
Eco57I	CTGAAG	3 cut(s)	489, 860, 936
Eco72I	CACGTG	1 cut(s)	947
Eco88I	CYCGRG	1 cut(s)	174
Eco91I	GGTNACC	1 cut(s)	689
EcoICRI	GAGCTC	1 cut(s)	1071
EcoO65I	GGTNACC	1 cut(s)	689
EcoRI	GAATTC	2 cut(s)	541, 1037
EcoRII	CCWGG	1 cut(s)	1089
EcoT38I	GRGCYC	2 cut(s)	181, 1073
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	3 cut(s)	720, 895, 957
FaiI	YATR	9 cut(s)	34, 190, 718, 785, 851, 883, 893, 955, 1053
FalI	AAGNNNNNCTT	4 cut(s)	225, 257, 626, 658
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	3 cut(s)	716, 891, 953
FauI	CCCGC	2 cut(s)	388, 443
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	2 cut(s)	306, 490
FriOI	GRGCYC	2 cut(s)	181, 1073
Fsp4HI	GCNGC	2 cut(s)	306, 490
FspBI	CTAG	6 cut(s)	195, 212, 561, 683, 812, 1108
GlaI	GCGC	1 cut(s)	732
GluI	GCNGC	2 cut(s)	306, 490
GsaI	CCCAGC	1 cut(s)	523
GsuI	CTGGAG	1 cut(s)	757
HaeIII	GGCC	2 cut(s)	179, 743
HapII	CCGG	1 cut(s)	435
HhaI	GCGC	1 cut(s)	733
Hin1I	GRCGYC	3 cut(s)	162, 360, 753
Hin1II	CATG	3 cut(s)	720, 895, 957
Hin6I	GCGC	1 cut(s)	731
HinP1I	GCGC	1 cut(s)	731
HincII	GTYRAC	2 cut(s)	478, 757
HindII	GTYRAC	2 cut(s)	478, 757
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	3 cut(s)	62, 479, 671
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	6 cut(s)	482, 508, 537, 587, 677, 701
Hpy166II	GTNNAC	3 cut(s)	284, 478, 757
Hpy188I	TCNGA	3 cut(s)	508, 589, 871
Hpy188III	TCNNGA	6 cut(s)	155, 166, 212, 352, 538, 892
Hpy8I	GTNNAC	3 cut(s)	284, 478, 757
Hpy99I	CGWCG	3 cut(s)	77, 625, 758
HpyAV	CCTTC	3 cut(s)	76, 387, 664
HpyCH4IV	ACGT	6 cut(s)	45, 162, 360, 678, 753, 946
HpyCH4V	TGCA	6 cut(s)	4, 305, 802, 820, 971, 1077
HpyF10VI	GCNNNNNNNGC	2 cut(s)	722, 1028
HpyF3I	CTNAG	3 cut(s)	144, 423, 796
HpySE526I	ACGT	6 cut(s)	45, 162, 360, 678, 753, 946
Hsp92I	GRCGYC	3 cut(s)	162, 360, 753
Hsp92II	CATG	3 cut(s)	720, 895, 957
HspAI	GCGC	1 cut(s)	731
Kzo9I	GATC	3 cut(s)	151, 214, 1059
LmnI	GCTCC	2 cut(s)	642, 1076
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	2 cut(s)	93, 958
MaeI	CTAG	6 cut(s)	195, 212, 561, 683, 812, 1108
MaeII	ACGT	6 cut(s)	45, 162, 360, 678, 753, 946
MaeIII	GTNAC	2 cut(s)	563, 689
MalI	GATC	3 cut(s)	153, 216, 1061
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	3 cut(s)	151, 214, 1059
MboII	GAAGA	4 cut(s)	89, 194, 245, 819
MflI	RGATCY	2 cut(s)	151, 214
MhlI	GDGCHC	3 cut(s)	181, 445, 1073
MluCI	AATT	8 cut(s)	7, 269, 541, 576, 804, 932, 1017, 1037
MlyI	GAGTC	2 cut(s)	473, 665
MmeI	TCCRAC	3 cut(s)	240, 312, 612
MroXI	GAANNNNTTC	2 cut(s)	240, 791
MseI	TTAA	3 cut(s)	372, 632, 996
MspCI	CTTAAG	1 cut(s)	995
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	1091
MvaI	CCWGG	1 cut(s)	1091
MvnI	CGCG	3 cut(s)	468, 489, 762
MwoI	GCNNNNNNNGC	2 cut(s)	722, 1028
NdeII	GATC	3 cut(s)	151, 214, 1059
NlaIII	CATG	3 cut(s)	720, 895, 957
NlaIV	GGNNCC	1 cut(s)	179
NmeAIII	GCCGAG	1 cut(s)	426
NmuCI	GTSAC	2 cut(s)	563, 689
NspI	RCATGY	2 cut(s)	720, 957
PagI	TCATGA	1 cut(s)	891
PcsI	WCGNNNNNNNCGW	2 cut(s)	759, 972
PdmI	GAANNNNTTC	2 cut(s)	240, 791
PfeI	GAWTC	1 cut(s)	62
Pfl23II	CGTACG	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	307, 491
PleI	GAGTC	2 cut(s)	473, 665
PmaCI	CACGTG	1 cut(s)	947
PmlI	CACGTG	1 cut(s)	947
PpsI	GAGTC	2 cut(s)	473, 665
Ppu21I	YACGTR	2 cut(s)	679, 947
PshAI	GACNNNNGTC	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	1073
Psp6I	CCWGG	1 cut(s)	1089
PspCI	CACGTG	1 cut(s)	947
PspEI	GGTNACC	1 cut(s)	689
PspFI	CCCAGC	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	1089
PspLI	CGTACG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	179
PspOMI	GGGCCC	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	177, 178
PsrI	GAACNNNNNNTAC	2 cut(s)	228, 260
PsuI	RGATCY	2 cut(s)	151, 214
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SacI	GAGCTC	1 cut(s)	1073
SalI	GTCGAC	1 cut(s)	755
SaqAI	TTAA	3 cut(s)	372, 632, 996
SatI	GCNGC	2 cut(s)	306, 490
Sau3AI	GATC	3 cut(s)	151, 214, 1059
Sau96I	GGNCC	2 cut(s)	177, 178
SchI	GAGTC	2 cut(s)	473, 665
ScrFI	CCNGG	1 cut(s)	1091
SduI	GDGCHC	3 cut(s)	181, 445, 1073
SfaNI	GCATC	2 cut(s)	93, 958
SfcI	CTRYAG	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	155, 995
SmoI	CTYRAG	2 cut(s)	155, 995
Sse9I	AATT	8 cut(s)	7, 269, 541, 576, 804, 932, 1017, 1037
SsiI	CCGC	8 cut(s)	18, 381, 450, 468, 489, 573, 725, 760
SspMI	CTAG	6 cut(s)	195, 212, 561, 683, 812, 1108
SstI	GAGCTC	1 cut(s)	1073
StyD4I	CCNGG	1 cut(s)	1089
TaiI	ACGT	6 cut(s)	48, 165, 363, 681, 756, 949
TaqI	TCGA	5 cut(s)	72, 167, 756, 833, 966
TasI	AATT	8 cut(s)	7, 269, 541, 576, 804, 932, 1017, 1037
TauI	GCSGC	1 cut(s)	492
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	3 cut(s)	372, 632, 996
Tru9I	TTAA	3 cut(s)	372, 632, 996
TscAI	CASTG	2 cut(s)	804, 994
TseFI	GTSAC	2 cut(s)	563, 689
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	2 cut(s)	563, 689
TspDTI	ATGAA	4 cut(s)	800, 819, 908, 1029
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	2 cut(s)	804, 994
Vha464I	CTTAAG	1 cut(s)	995
XapI	RAATTY	4 cut(s)	7, 269, 541, 1037
XbaI	TCTAGA	1 cut(s)	211
XceI	RCATGY	2 cut(s)	720, 957
XmiI	GTMKAC	1 cut(s)	756
XmnI	GAANNNNTTC	2 cut(s)	240, 791
XspI	CTAG	6 cut(s)	195, 212, 561, 683, 812, 1108
ZraI	GACGTC	3 cut(s)	163, 361, 754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.