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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g05721 |
| rosa_chinensis | RchiOBHm_Chr1g0343511 |
| rosa_laevigata | RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661 |
| rosa_multiflora | Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460 |
| rosa_samantha | Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 3 cut(s) | 378, 1107, 1230 |
| AccII | CGCG | 6 cut(s) | 100, 150, 686, 923, 1058, 1503 |
| AccIII | TCCGGA | 2 cut(s) | 128, 273 |
| AclWI | GGATC | 4 cut(s) | 575, 588, 1360, 1535 |
| AcoI | YGGCCR | 1 cut(s) | 1476 |
| AcsI | RAATTY | 2 cut(s) | 170, 938 |
| AcuI | CTGAAG | 3 cut(s) | 398, 1113, 1355 |
| AcyI | GRCGYC | 1 cut(s) | 1166 |
| AdeI | CACNNNGTG | 1 cut(s) | 739 |
| AfaI | GTAC | 1 cut(s) | 983 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 21, 80, 927, 1504 |
| AgsI | TTSAA | 7 cut(s) | 107, 217, 523, 731, 1004, 1237, 1442 |
| AhlI | ACTAGT | 1 cut(s) | 250 |
| AjnI | CCWGG | 3 cut(s) | 384, 475, 1356 |
| Alw21I | GWGCWC | 2 cut(s) | 674, 786 |
| Alw26I | GTCTC | 5 cut(s) | 184, 331, 472, 911, 1568 |
| Alw44I | GTGCAC | 1 cut(s) | 782 |
| AlwI | GGATC | 4 cut(s) | 575, 588, 1360, 1535 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 182, 1077 |
| Ama87I | CYCGRG | 3 cut(s) | 15, 673, 845 |
| Aor13HI | TCCGGA | 2 cut(s) | 128, 273 |
| AoxI | GGCC | 7 cut(s) | 48, 407, 870, 1006, 1353, 1359, 1476 |
| ApaLI | GTGCAC | 1 cut(s) | 782 |
| ApeKI | GCWGC | 3 cut(s) | 29, 1324, 1372 |
| ApoI | RAATTY | 2 cut(s) | 170, 938 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1016, 1048, 1371, 1403 |
| AspLEI | GCGC | 4 cut(s) | 102, 691, 1082, 1329 |
| AspS9I | GGNCC | 5 cut(s) | 408, 455, 747, 1354, 1507 |
| AsuHPI | GGTGA | 3 cut(s) | 62, 401, 504 |
| AvaI | CYCGRG | 3 cut(s) | 15, 673, 845 |
| AvaII | GGWCC | 3 cut(s) | 455, 747, 1507 |
| BaeGI | GKGCMC | 1 cut(s) | 786 |
| BamHI | GGATCC | 1 cut(s) | 580 |
| BanII | GRGCYC | 1 cut(s) | 674 |
| BauI | CACGAG | 1 cut(s) | 330 |
| BbsI | GAAGAC | 1 cut(s) | 1029 |
| Bbv12I | GWGCWC | 2 cut(s) | 674, 786 |
| BbvCI | CCTCAGC | 1 cut(s) | 867 |
| BbvI | GCAGC | 3 cut(s) | 41, 1311, 1384 |
| BccI | CCATC | 4 cut(s) | 259, 672, 990, 1282 |
| BceAI | ACGGC | 4 cut(s) | 363, 574, 1155, 1346 |
| BciT130I | CCWGG | 3 cut(s) | 386, 477, 1358 |
| BciVI | GTATCC | 1 cut(s) | 1487 |
| BclI | TGATCA | 1 cut(s) | 1306 |
| BcoDI | GTCTC | 5 cut(s) | 184, 331, 472, 911, 1568 |
| BcuI | ACTAGT | 1 cut(s) | 250 |
| BfaI | CTAG | 4 cut(s) | 56, 251, 461, 1149 |
| BfuI | GTATCC | 1 cut(s) | 1487 |
| BglII | AGATCT | 2 cut(s) | 226, 679 |
| BisI | GCNGC | 7 cut(s) | 30, 148, 687, 1325, 1373, 1476, 1479 |
| BlsI | GCNGC | 7 cut(s) | 31, 149, 688, 1326, 1374, 1477, 1480 |
| BmcAI | AGTACT | 1 cut(s) | 983 |
| Bme1390I | CCNGG | 3 cut(s) | 386, 477, 1358 |
| Bme18I | GGWCC | 3 cut(s) | 455, 747, 1507 |
| BmeT110I | CYCGRG | 3 cut(s) | 15, 673, 845 |
| BmgT120I | GGNCC | 5 cut(s) | 408, 455, 747, 1354, 1507 |
| BmiI | GGNNCC | 5 cut(s) | 240, 288, 410, 582, 1508 |
| BmrFI | CCNGG | 3 cut(s) | 386, 477, 1358 |
| BmsI | GCATC | 2 cut(s) | 742, 1083 |
| BoxI | GACNNNNGTC | 1 cut(s) | 923 |
| BpiI | GAAGAC | 1 cut(s) | 1029 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1313, 1345 |
| Bpu10I | CCTNAGC | 1 cut(s) | 867 |
| BpuEI | CTTGAG | 2 cut(s) | 336, 777 |
| BsaAI | YACGTR | 1 cut(s) | 568 |
| BsaBI | GATNNNNATC | 1 cut(s) | 269 |
| BsaHI | GRCGYC | 1 cut(s) | 1166 |
| BsaI | GGTCTC | 1 cut(s) | 911 |
| BsaJI | CCNNGG | 8 cut(s) | 16, 45, 384, 385, 627, 921, 1356, 1501 |
| BsaWI | WCCGGW | 4 cut(s) | 128, 273, 401, 452 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 21, 80, 927, 1504 |
| Bse8I | GATNNNNATC | 1 cut(s) | 269 |
| BseAI | TCCGGA | 2 cut(s) | 128, 273 |
| BseBI | CCWGG | 3 cut(s) | 386, 477, 1358 |
| BseDI | CCNNGG | 8 cut(s) | 16, 45, 384, 385, 627, 921, 1356, 1501 |
| BseGI | GGATG | 7 cut(s) | 124, 270, 270, 449, 492, 1001, 1530 |
| BseJI | GATNNNNATC | 1 cut(s) | 269 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 21, 80, 927, 1504 |
| BseMII | CTCAG | 4 cut(s) | 659, 858, 1265, 1374 |
| BseRI | GAGGAG | 3 cut(s) | 85, 251, 1132 |
| BseSI | GKGCMC | 1 cut(s) | 786 |
| BseX3I | CGGCCG | 1 cut(s) | 1476 |
| BseXI | GCAGC | 3 cut(s) | 41, 1311, 1384 |
| BsgI | GTGCAG | 1 cut(s) | 276 |
| Bsh1236I | CGCG | 6 cut(s) | 100, 150, 686, 923, 1058, 1503 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1479 |
| BshFI | GGCC | 7 cut(s) | 50, 409, 872, 1008, 1355, 1361, 1478 |
| BsiEI | CGRYCG | 1 cut(s) | 1479 |
| BsiHKAI | GWGCWC | 2 cut(s) | 674, 786 |
| BsiHKCI | CYCGRG | 3 cut(s) | 15, 673, 845 |
| BsiSI | CCGG | 6 cut(s) | 129, 242, 274, 402, 453, 1043 |
| BslFI | GGGAC | 3 cut(s) | 1147, 1353, 1419 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 21, 80, 927, 1504 |
| BsmAI | GTCTC | 5 cut(s) | 184, 331, 472, 911, 1568 |
| BsmBI | CGTCTC | 1 cut(s) | 1568 |
| BsmFI | GGGAC | 3 cut(s) | 1147, 1353, 1419 |
| BsmI | GAATGC | 1 cut(s) | 31 |
| BsnI | GGCC | 7 cut(s) | 50, 409, 872, 1008, 1355, 1361, 1478 |
| Bso31I | GGTCTC | 1 cut(s) | 911 |
| BsoBI | CYCGRG | 3 cut(s) | 15, 673, 845 |
| Bsp1286I | GDGCHC | 2 cut(s) | 674, 786 |
| Bsp13I | TCCGGA | 2 cut(s) | 128, 273 |
| BspANI | GGCC | 7 cut(s) | 50, 409, 872, 1008, 1355, 1361, 1478 |
| BspCNI | CTCAG | 4 cut(s) | 660, 859, 1264, 1375 |
| BspEI | TCCGGA | 2 cut(s) | 128, 273 |
| BspFNI | CGCG | 6 cut(s) | 100, 150, 686, 923, 1058, 1503 |
| BspLI | GGNNCC | 5 cut(s) | 240, 288, 410, 582, 1508 |
| BspPI | GGATC | 4 cut(s) | 575, 588, 1360, 1535 |
| BspTNI | GGTCTC | 1 cut(s) | 911 |
| BssECI | CCNNGG | 8 cut(s) | 16, 45, 384, 385, 627, 921, 1356, 1501 |
| BssNI | GRCGYC | 1 cut(s) | 1166 |
| BssSI | CACGAG | 1 cut(s) | 330 |
| BssT1I | CCWWGG | 2 cut(s) | 45, 627 |
| Bst2BI | CACGAG | 1 cut(s) | 330 |
| Bst2UI | CCWGG | 3 cut(s) | 386, 477, 1358 |
| Bst4CI | ACNGT | 6 cut(s) | 178, 516, 711, 1112, 1520, 1562 |
| Bst6I | CTCTTC | 1 cut(s) | 1089 |
| BstACI | GRCGYC | 1 cut(s) | 1166 |
| BstBAI | YACGTR | 1 cut(s) | 568 |
| BstC8I | GCNNGC | 5 cut(s) | 607, 1010, 1331, 1416, 1432 |
| BstDEI | CTNAG | 6 cut(s) | 668, 867, 1161, 1251, 1383, 1576 |
| BstDSI | CCRYGG | 2 cut(s) | 921, 1501 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 78 |
| BstF5I | GGATG | 7 cut(s) | 124, 270, 270, 449, 492, 1001, 1530 |
| BstFNI | CGCG | 6 cut(s) | 100, 150, 686, 923, 1058, 1503 |
| BstHHI | GCGC | 4 cut(s) | 102, 691, 1082, 1329 |
| BstMAI | GTCTC | 5 cut(s) | 184, 331, 472, 911, 1568 |
| BstMCI | CGRYCG | 1 cut(s) | 1479 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 38, 47, 347, 415, 695, 839, 1172, 1330 |
| BstNI | CCWGG | 3 cut(s) | 386, 477, 1358 |
| BstNSI | RCATGY | 1 cut(s) | 8 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 923 |
| BstSCI | CCNGG | 3 cut(s) | 384, 475, 1356 |
| BstSLI | GKGCMC | 1 cut(s) | 786 |
| BstSNI | TACGTA | 1 cut(s) | 568 |
| BstUI | CGCG | 6 cut(s) | 100, 150, 686, 923, 1058, 1503 |
| BstV1I | GCAGC | 3 cut(s) | 41, 1311, 1384 |
| BstV2I | GAAGAC | 1 cut(s) | 1029 |
| BstX2I | RGATCY | 3 cut(s) | 226, 580, 679 |
| BstYI | RGATCY | 3 cut(s) | 226, 580, 679 |
| BstZI | CGGCCG | 1 cut(s) | 1476 |
| BsuI | GTATCC | 1 cut(s) | 1487 |
| BsuRI | GGCC | 7 cut(s) | 50, 409, 872, 1008, 1355, 1361, 1478 |
| BtgI | CCRYGG | 2 cut(s) | 921, 1501 |
| BtsCI | GGATG | 7 cut(s) | 124, 270, 270, 449, 492, 1001, 1530 |
| Cac8I | GCNNGC | 5 cut(s) | 607, 1010, 1331, 1416, 1432 |
| CaiI | CAGNNNCTG | 2 cut(s) | 182, 1077 |
| CciNI | GCGGCCGC | 1 cut(s) | 1476 |
| CfoI | GCGC | 4 cut(s) | 102, 691, 1082, 1329 |
| Cfr13I | GGNCC | 5 cut(s) | 408, 455, 747, 1354, 1507 |
| Cfr42I | CCGCGG | 2 cut(s) | 924, 1504 |
| CseI | GACGC | 3 cut(s) | 139, 1064, 1155 |
| Csp6I | GTAC | 1 cut(s) | 982 |
| CviAII | CATG | 4 cut(s) | 5, 1103, 1310, 1511 |
| CviQI | GTAC | 1 cut(s) | 982 |
| DdeI | CTNAG | 6 cut(s) | 668, 867, 1161, 1251, 1383, 1576 |
| DraIII | CACNNNGTG | 1 cut(s) | 739 |
| EaeI | YGGCCR | 1 cut(s) | 1476 |
| EagI | CGGCCG | 1 cut(s) | 1476 |
| Eam1104I | CTCTTC | 1 cut(s) | 1089 |
| EarI | CTCTTC | 1 cut(s) | 1089 |
| Ecl136II | GAGCTC | 1 cut(s) | 672 |
| EclXI | CGGCCG | 1 cut(s) | 1476 |
| Eco105I | TACGTA | 1 cut(s) | 568 |
| Eco130I | CCWWGG | 2 cut(s) | 45, 627 |
| Eco24I | GRGCYC | 1 cut(s) | 674 |
| Eco31I | GGTCTC | 1 cut(s) | 911 |
| Eco47I | GGWCC | 3 cut(s) | 455, 747, 1507 |
| Eco52I | CGGCCG | 1 cut(s) | 1476 |
| Eco53kI | GAGCTC | 1 cut(s) | 672 |
| Eco57I | CTGAAG | 3 cut(s) | 398, 1113, 1355 |
| Eco88I | CYCGRG | 3 cut(s) | 15, 673, 845 |
| EcoICRI | GAGCTC | 1 cut(s) | 672 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 78 |
| EcoO109I | RGGNCCY | 1 cut(s) | 408 |
| EcoRII | CCWGG | 3 cut(s) | 384, 475, 1356 |
| EcoT14I | CCWWGG | 2 cut(s) | 45, 627 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 674 |
| ErhI | CCWWGG | 2 cut(s) | 45, 627 |
| Esp3I | CGTCTC | 1 cut(s) | 1568 |
| FaeI | CATG | 4 cut(s) | 8, 1106, 1313, 1514 |
| FaqI | GGGAC | 3 cut(s) | 1147, 1353, 1419 |
| FatI | CATG | 4 cut(s) | 4, 1102, 1309, 1510 |
| FauI | CCCGC | 3 cut(s) | 254, 536, 1496 |
| FbaI | TGATCA | 1 cut(s) | 1306 |
| FblI | GTMKAC | 3 cut(s) | 378, 1107, 1230 |
| Fnu4HI | GCNGC | 7 cut(s) | 30, 148, 687, 1325, 1373, 1476, 1479 |
| FokI | GGATG | 7 cut(s) | 131, 257, 277, 436, 479, 1008, 1517 |
| FriOI | GRGCYC | 1 cut(s) | 674 |
| Fsp4HI | GCNGC | 7 cut(s) | 30, 148, 687, 1325, 1373, 1476, 1479 |
| FspBI | CTAG | 4 cut(s) | 56, 251, 461, 1149 |
| GlaI | GCGC | 4 cut(s) | 101, 690, 1081, 1328 |
| GluI | GCNGC | 7 cut(s) | 30, 148, 687, 1325, 1373, 1476, 1479 |
| HaeIII | GGCC | 7 cut(s) | 50, 409, 872, 1008, 1355, 1361, 1478 |
| HapII | CCGG | 6 cut(s) | 129, 242, 274, 402, 453, 1043 |
| HgaI | GACGC | 3 cut(s) | 139, 1064, 1155 |
| HhaI | GCGC | 4 cut(s) | 102, 691, 1082, 1329 |
| Hin1I | GRCGYC | 1 cut(s) | 1166 |
| Hin1II | CATG | 4 cut(s) | 8, 1106, 1313, 1514 |
| Hin6I | GCGC | 4 cut(s) | 100, 689, 1080, 1327 |
| HinP1I | GCGC | 4 cut(s) | 100, 689, 1080, 1327 |
| HincII | GTYRAC | 3 cut(s) | 379, 646, 1108 |
| HindII | GTYRAC | 3 cut(s) | 379, 646, 1108 |
| HindIII | AAGCTT | 1 cut(s) | 211 |
| HinfI | GANTC | 7 cut(s) | 359, 375, 727, 1046, 1157, 1199, 1292 |
| HpaII | CCGG | 6 cut(s) | 129, 242, 274, 402, 453, 1043 |
| HphI | GGTGA | 3 cut(s) | 62, 401, 504 |
| Hpy166II | GTNNAC | 6 cut(s) | 379, 447, 646, 784, 1108, 1231 |
| Hpy188III | TCNNGA | 8 cut(s) | 15, 129, 274, 675, 794, 1091, 1215, 1390 |
| Hpy8I | GTNNAC | 6 cut(s) | 379, 447, 646, 784, 1108, 1231 |
| Hpy99I | CGWCG | 3 cut(s) | 439, 1040, 1058 |
| HpyAV | CCTTC | 9 cut(s) | 251, 399, 422, 601, 1097, 1271, 1330, 1440, 1484 |
| HpyCH4III | ACNGT | 6 cut(s) | 178, 516, 711, 1112, 1520, 1562 |
| HpyCH4IV | ACGT | 1 cut(s) | 567 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 29, 293, 441, 784, 978, 1424 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 38, 47, 347, 415, 695, 839, 1172, 1330 |
| HpyF3I | CTNAG | 6 cut(s) | 668, 867, 1161, 1251, 1383, 1576 |
| HpySE526I | ACGT | 1 cut(s) | 567 |
| Hsp92I | GRCGYC | 1 cut(s) | 1166 |
| Hsp92II | CATG | 4 cut(s) | 8, 1106, 1313, 1514 |
| HspAI | GCGC | 4 cut(s) | 100, 689, 1080, 1327 |
| Kpn2I | TCCGGA | 2 cut(s) | 128, 273 |
| Ksp22I | TGATCA | 1 cut(s) | 1306 |
| KspI | CCGCGG | 2 cut(s) | 924, 1504 |
| LmnI | GCTCC | 5 cut(s) | 238, 292, 1060, 1119, 1411 |
| Lsp1109I | GCAGC | 3 cut(s) | 41, 1311, 1384 |
| LweI | GCATC | 2 cut(s) | 742, 1083 |
| MaeI | CTAG | 4 cut(s) | 56, 251, 461, 1149 |
| MaeII | ACGT | 1 cut(s) | 567 |
| MaeIII | GTNAC | 1 cut(s) | 389 |
| MboII | GAAGA | 9 cut(s) | 773, 809, 963, 1034, 1106, 1182, 1194, 1430, 1499 |
| MfeI | CAATTG | 1 cut(s) | 585 |
| MflI | RGATCY | 3 cut(s) | 226, 580, 679 |
| MhlI | GDGCHC | 2 cut(s) | 674, 786 |
| MluCI | AATT | 9 cut(s) | 35, 158, 170, 366, 585, 885, 938, 1066, 1185 |
| MlyI | GAGTC | 2 cut(s) | 384, 1166 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroI | TCCGGA | 2 cut(s) | 128, 273 |
| MseI | TTAA | 1 cut(s) | 1065 |
| MspA1I | CMGCKG | 2 cut(s) | 923, 1503 |
| MspI | CCGG | 6 cut(s) | 129, 242, 274, 402, 453, 1043 |
| MspR9I | CCNGG | 3 cut(s) | 386, 477, 1358 |
| MunI | CAATTG | 1 cut(s) | 585 |
| Mva1269I | GAATGC | 1 cut(s) | 31 |
| MvaI | CCWGG | 3 cut(s) | 386, 477, 1358 |
| MvnI | CGCG | 6 cut(s) | 100, 150, 686, 923, 1058, 1503 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 38, 47, 347, 415, 695, 839, 1172, 1330 |
| NlaIII | CATG | 4 cut(s) | 8, 1106, 1313, 1514 |
| NlaIV | GGNNCC | 5 cut(s) | 240, 288, 410, 582, 1508 |
| NmeAIII | GCCGAG | 1 cut(s) | 76 |
| NmuCI | GTSAC | 1 cut(s) | 389 |
| NotI | GCGGCCGC | 1 cut(s) | 1476 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 8 |
| PaeR7I | CTCGAG | 2 cut(s) | 673, 845 |
| PasI | CCCWGGG | 1 cut(s) | 385 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 564 |
| PctI | GAATGC | 1 cut(s) | 31 |
| PfeI | GAWTC | 5 cut(s) | 359, 727, 1046, 1199, 1292 |
| PkrI | GCNGC | 7 cut(s) | 31, 149, 688, 1326, 1374, 1477, 1480 |
| PleI | GAGTC | 2 cut(s) | 383, 1165 |
| PpsI | GAGTC | 2 cut(s) | 383, 1165 |
| Ppu21I | YACGTR | 1 cut(s) | 568 |
| PshAI | GACNNNNGTC | 1 cut(s) | 923 |
| Psp124BI | GAGCTC | 1 cut(s) | 674 |
| Psp6I | CCWGG | 3 cut(s) | 384, 475, 1356 |
| PspGI | CCWGG | 3 cut(s) | 384, 475, 1356 |
| PspN4I | GGNNCC | 5 cut(s) | 240, 288, 410, 582, 1508 |
| PspPI | GGNCC | 5 cut(s) | 408, 455, 747, 1354, 1507 |
| PspXI | VCTCGAGB | 1 cut(s) | 845 |
| PstNI | CAGNNNCTG | 2 cut(s) | 182, 1077 |
| PsuI | RGATCY | 3 cut(s) | 226, 580, 679 |
| RsaI | GTAC | 1 cut(s) | 983 |
| RsaNI | GTAC | 1 cut(s) | 982 |
| SacI | GAGCTC | 1 cut(s) | 674 |
| SacII | CCGCGG | 2 cut(s) | 924, 1504 |
| SalI | GTCGAC | 2 cut(s) | 377, 1106 |
| SaqAI | TTAA | 1 cut(s) | 1065 |
| SatI | GCNGC | 7 cut(s) | 30, 148, 687, 1325, 1373, 1476, 1479 |
| Sau96I | GGNCC | 5 cut(s) | 408, 455, 747, 1354, 1507 |
| ScaI | AGTACT | 1 cut(s) | 983 |
| SchI | GAGTC | 2 cut(s) | 384, 1166 |
| ScrFI | CCNGG | 3 cut(s) | 386, 477, 1358 |
| SduI | GDGCHC | 2 cut(s) | 674, 786 |
| SfaNI | GCATC | 2 cut(s) | 742, 1083 |
| Sfr274I | CTCGAG | 2 cut(s) | 673, 845 |
| Sfr303I | CCGCGG | 2 cut(s) | 924, 1504 |
| SgrBI | CCGCGG | 2 cut(s) | 924, 1504 |
| SinI | GGWCC | 3 cut(s) | 455, 747, 1507 |
| SlaI | CTCGAG | 2 cut(s) | 673, 845 |
| SmlI | CTYRAG | 4 cut(s) | 351, 673, 792, 845 |
| SmoI | CTYRAG | 4 cut(s) | 351, 673, 792, 845 |
| SnaBI | TACGTA | 1 cut(s) | 568 |
| SpeI | ACTAGT | 1 cut(s) | 250 |
| Sse9I | AATT | 9 cut(s) | 35, 158, 170, 366, 585, 885, 938, 1066, 1185 |
| SspI | AATATT | 1 cut(s) | 640 |
| SspMI | CTAG | 4 cut(s) | 56, 251, 461, 1149 |
| SstI | GAGCTC | 1 cut(s) | 674 |
| StyD4I | CCNGG | 3 cut(s) | 384, 475, 1356 |
| StyI | CCWWGG | 2 cut(s) | 45, 627 |
| TaaI | ACNGT | 6 cut(s) | 178, 516, 711, 1112, 1520, 1562 |
| TaiI | ACGT | 1 cut(s) | 570 |
| TaqI | TCGA | 9 cut(s) | 76, 156, 378, 594, 674, 846, 1038, 1053, 1107 |
| TaqII | GACCGA | 1 cut(s) | 764 |
| TasI | AATT | 9 cut(s) | 35, 158, 170, 366, 585, 885, 938, 1066, 1185 |
| TatI | WGTACW | 1 cut(s) | 981 |
| TauI | GCSGC | 4 cut(s) | 150, 689, 1478, 1481 |
| TfiI | GAWTC | 5 cut(s) | 359, 727, 1046, 1199, 1292 |
| Tru1I | TTAA | 1 cut(s) | 1065 |
| Tru9I | TTAA | 1 cut(s) | 1065 |
| TseFI | GTSAC | 1 cut(s) | 389 |
| TseI | GCWGC | 3 cut(s) | 29, 1324, 1372 |
| Tsp45I | GTSAC | 1 cut(s) | 389 |
| TspDTI | ATGAA | 4 cut(s) | 498, 926, 972, 1035 |
| TspGWI | ACGGA | 1 cut(s) | 977 |
| VneI | GTGCAC | 1 cut(s) | 782 |
| VpaK11BI | GGWCC | 3 cut(s) | 455, 747, 1507 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 78 |
| XapI | RAATTY | 2 cut(s) | 170, 938 |
| XceI | RCATGY | 1 cut(s) | 8 |
| XhoI | CTCGAG | 2 cut(s) | 673, 845 |
| XmiI | GTMKAC | 3 cut(s) | 378, 1107, 1230 |
| XspI | CTAG | 4 cut(s) | 56, 251, 461, 1149 |
| ZrmI | AGTACT | 1 cut(s) | 983 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |