Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003693

Physical Location & Seq

Genomic Coordinates Forward (+)

47560972 .. 47562663

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019160

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTCAAAGGAGACGAAGCCCATGAAGATGGGTCCATCGCCTTCTCCGAACGCGCAGGATTATGTGTTGTCTATACCATGGAACGTCGCTCAATTTGCTTCCAAAGTCGACCTCGACGACATTTCTCACCCTCGAACAGGGGCAATTTATTCCTCGTTCTTTCAAGTGTTCGGGGATGATCTTTCTGGAGAGGAGTTGTTTCGCCGCATCATTGAATTGGAGAGTAAATTTATAGTCTCTGAACACACTTCTACCTTGTTTGTAGAAAGCTTTAAAACTGAAGATCTCGTTGAAGAGTCGGAGAAATCCGTGGAAGGTGGAATGGACATCAGGAAAGTGAAGGCTCCTGCACCGCAAGGGAGGAAAACCAAAAAACAGAAAGTGTCTCCGTTGTTGTCGAAACAACTCAAGCCGATTCTGAAACTATTGAAGCCGACTCCTGAGGTGACAAAGAACCCTGGAGGGCCCTTTCCACCCCCTTGGCTTGATTCCCTACATTCGCTGTGCAAGTCAACCAGCCATCCTCTAGCATTTTCTCTTCCAAGTGCTAACCTCGTCACTCACCCAATCGGTTCACCATTATCCTTGAAACCTCGTTTGCAACTATCTTTCCGCAGAGATGATGGCTCATACGTGTTCGAGGGGGGTTCAATTTCCTTTGACAAAAAAGCGTGCTTGGCCGTGGCACAATCCTTGGCCCTGAATACCGTTGATCACGAAAAGCTTTCTCATTTGAGTTCGAGGGGCCTTGTGGCGCAACTTGCCTTATGCTTACAATCAAAAGAACATCCCCCAACACTTGAAAGAACGAGGAATAAATTGTTCCTGTTTGAGGGTGAGAAATGTCTTCAAGGTCAGCTTTGGAAGCGAATTGAGTGGCGTTCCACCCTCGAGACAACACATGATCCTTTAACCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

34.11

Weight (kDa)

8.91

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05721
rosa_chinensis	RchiOBHm_Chr1g0343511
rosa_laevigata	RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661
rosa_multiflora	Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004
rosa_roxburghii	Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460
rosa_samantha	Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	53
AciI	CCGC	3 cut(s)	205, 353, 613
AclWI	GGATC	1 cut(s)	899
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	300
AfiI	CCNNNNNNNGG	2 cut(s)	137, 832
AflIII	ACRYGT	1 cut(s)	633
AgsI	TTSAA	8 cut(s)	164, 215, 293, 430, 589, 651, 803, 851
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	3 cut(s)	270, 724, 859
AluI	AGCT	3 cut(s)	270, 724, 859
Alw26I	GTCTC	4 cut(s)	5, 241, 390, 887
AlwI	GGATC	1 cut(s)	899
Ama87I	CYCGRG	1 cut(s)	890
AoxI	GGCC	4 cut(s)	464, 678, 696, 745
ApaI	GGGCCC	1 cut(s)	468
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	55, 757
AspS9I	GGNCC	5 cut(s)	32, 464, 465, 697, 745
AsuHPI	GGTGA	5 cut(s)	119, 457, 554, 567, 848
AvaI	CYCGRG	1 cut(s)	890
AvaII	GGWCC	1 cut(s)	32
AxyI	CCTNAGG	1 cut(s)	441
BaeGI	GKGCMC	1 cut(s)	468
BanII	GRGCYC	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	839
BccI	CCATC	4 cut(s)	22, 43, 528, 617
BceAI	ACGGC	1 cut(s)	665
BciT130I	CCWGG	1 cut(s)	459
BclI	TGATCA	1 cut(s)	712
BcoDI	GTCTC	4 cut(s)	5, 241, 390, 887
BfaI	CTAG	1 cut(s)	527
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	1 cut(s)	32
BmeT110I	CYCGRG	1 cut(s)	890
BmgT120I	GGNCC	5 cut(s)	32, 464, 465, 697, 745
BmiI	GGNNCC	4 cut(s)	33, 345, 466, 746
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	839
BpmI	CTGGAG	2 cut(s)	207, 480
BpuEI	CTTGAG	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	634
BsaJI	CCNNGG	6 cut(s)	77, 309, 457, 479, 681, 693
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 832
Bse21I	CCTNAGG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	6 cut(s)	77, 309, 457, 479, 681, 693
BseGI	GGATG	3 cut(s)	181, 520, 787
BseLI	CCNNNNNNNGG	2 cut(s)	137, 832
BseMII	CTCAG	1 cut(s)	432
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	468
BsgI	GTGCAG	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	4 cut(s)	466, 680, 698, 747
BsiHKCI	CYCGRG	1 cut(s)	890
BslI	CCNNNNNNNGG	2 cut(s)	137, 832
BsmAI	GTCTC	4 cut(s)	5, 241, 390, 887
BsmBI	CGTCTC	1 cut(s)	5
BsnI	GGCC	4 cut(s)	466, 680, 698, 747
BsoBI	CYCGRG	1 cut(s)	890
Bsp120I	GGGCCC	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	4 cut(s)	178, 283, 712, 904
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	3 cut(s)	205, 353, 613
BspANI	GGCC	4 cut(s)	466, 680, 698, 747
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	4 cut(s)	33, 345, 466, 746
BspPI	GGATC	1 cut(s)	899
BssECI	CCNNGG	6 cut(s)	77, 309, 457, 479, 681, 693
BssMI	GATC	4 cut(s)	178, 283, 712, 904
BssT1I	CCWWGG	3 cut(s)	77, 479, 693
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	709
Bst6I	CTCTTC	2 cut(s)	288, 543
BstBAI	YACGTR	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	673
BstDEI	CTNAG	1 cut(s)	441
BstDSI	CCRYGG	3 cut(s)	77, 309, 681
BstENI	CCTNNNNNAGG	2 cut(s)	135, 830
BstF5I	GGATG	3 cut(s)	181, 520, 787
BstFNI	CGCG	1 cut(s)	53
BstHHI	GCGC	2 cut(s)	55, 757
BstKTI	GATC	4 cut(s)	181, 286, 715, 907
BstMAI	GTCTC	4 cut(s)	5, 241, 390, 887
BstMBI	GATC	4 cut(s)	178, 283, 712, 904
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 677, 761, 865
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstSLI	GKGCMC	1 cut(s)	468
BstUI	CGCG	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	839
BstX2I	RGATCY	1 cut(s)	283
BstXI	CCANNNNNNTGG	2 cut(s)	28, 480
BstYI	RGATCY	1 cut(s)	283
Bsu36I	CCTNAGG	1 cut(s)	441
BsuRI	GGCC	4 cut(s)	466, 680, 698, 747
BtgI	CCRYGG	3 cut(s)	77, 309, 681
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	181, 520, 787
Cac8I	GCNNGC	1 cut(s)	673
CfoI	GCGC	2 cut(s)	55, 757
Cfr13I	GGNCC	5 cut(s)	32, 464, 465, 697, 745
CviAII	CATG	3 cut(s)	22, 78, 902
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	4 cut(s)	180, 285, 714, 906
DpnII	GATC	4 cut(s)	178, 283, 712, 904
DraI	TTTAAA	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	678
Eam1104I	CTCTTC	2 cut(s)	288, 543
EarI	CTCTTC	2 cut(s)	288, 543
Eco130I	CCWWGG	3 cut(s)	77, 479, 693
Eco24I	GRGCYC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	300
Eco81I	CCTNAGG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	890
EcoNI	CCTNNNNNAGG	2 cut(s)	135, 830
EcoO109I	RGGNCCY	3 cut(s)	464, 465, 745
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	3 cut(s)	77, 479, 693
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	3 cut(s)	77, 479, 693
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	3 cut(s)	25, 81, 905
FaiI	YATR	8 cut(s)	23, 63, 74, 79, 233, 631, 769, 903
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FatI	CATG	3 cut(s)	21, 77, 901
FbaI	TGATCA	1 cut(s)	712
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	3 cut(s)	188, 507, 774
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	1 cut(s)	527
GlaI	GCGC	2 cut(s)	54, 756
GluI	GCNGC	1 cut(s)	205
GsuI	CTGGAG	2 cut(s)	207, 480
HaeIII	GGCC	4 cut(s)	466, 680, 698, 747
HhaI	GCGC	2 cut(s)	55, 757
Hin1II	CATG	3 cut(s)	25, 81, 905
Hin6I	GCGC	2 cut(s)	53, 755
HinP1I	GCGC	2 cut(s)	53, 755
HincII	GTYRAC	2 cut(s)	109, 513
HindII	GTYRAC	2 cut(s)	109, 513
HindIII	AAGCTT	2 cut(s)	268, 722
HinfI	GANTC	4 cut(s)	296, 415, 436, 488
HphI	GGTGA	5 cut(s)	119, 457, 554, 567, 848
Hpy166II	GTNNAC	3 cut(s)	109, 513, 575
Hpy188I	TCNGA	4 cut(s)	48, 241, 301, 420
Hpy188III	TCNNGA	5 cut(s)	186, 331, 440, 716, 892
Hpy8I	GTNNAC	3 cut(s)	109, 513, 575
Hpy99I	CGWCG	2 cut(s)	89, 119
HpyAV	CCTTC	3 cut(s)	51, 308, 334
HpyCH4III	ACNGT	1 cut(s)	709
HpyCH4IV	ACGT	2 cut(s)	84, 633
HpyCH4V	TGCA	3 cut(s)	350, 507, 601
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 677, 761, 865
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	2 cut(s)	84, 633
Hsp92II	CATG	3 cut(s)	25, 81, 905
HspAI	GCGC	2 cut(s)	53, 755
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	4 cut(s)	178, 283, 712, 904
LmnI	GCTCC	1 cut(s)	349
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	2 cut(s)	84, 633
MaeIII	GTNAC	2 cut(s)	445, 556
MalI	GATC	4 cut(s)	180, 285, 714, 906
MboI	GATC	4 cut(s)	178, 283, 712, 904
MboII	GAAGA	5 cut(s)	37, 293, 305, 530, 839
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	7 cut(s)	92, 144, 215, 227, 651, 818, 870
MlyI	GAGTC	2 cut(s)	305, 430
MmeI	TCCRAC	1 cut(s)	279
MseI	TTAA	2 cut(s)	273, 911
MslI	CAYNNNNRTG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	4 cut(s)	95, 677, 761, 865
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	4 cut(s)	178, 283, 712, 904
NlaIII	CATG	3 cut(s)	25, 81, 905
NlaIV	GGNNCC	4 cut(s)	33, 345, 466, 746
NmuCI	GTSAC	2 cut(s)	445, 556
PaeR7I	CTCGAG	1 cut(s)	890
PcsI	WCGNNNNNNNCGW	2 cut(s)	44, 114
PfeI	GAWTC	2 cut(s)	415, 488
PkrI	GCNGC	1 cut(s)	206
PleI	GAGTC	2 cut(s)	304, 430
PpsI	GAGTC	2 cut(s)	304, 430
Ppu21I	YACGTR	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	4 cut(s)	33, 345, 466, 746
PspOMI	GGGCCC	1 cut(s)	464
PspPI	GGNCC	5 cut(s)	32, 464, 465, 697, 745
PsuI	RGATCY	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	273, 911
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	4 cut(s)	178, 283, 712, 904
Sau96I	GGNCC	5 cut(s)	32, 464, 465, 697, 745
SchI	GAGTC	2 cut(s)	305, 430
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	1 cut(s)	468
SfaNI	GCATC	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	890
SinI	GGWCC	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	890
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	2 cut(s)	407, 890
SmoI	CTYRAG	2 cut(s)	407, 890
Sse9I	AATT	7 cut(s)	92, 144, 215, 227, 651, 818, 870
SsiI	CCGC	3 cut(s)	205, 353, 613
SspMI	CTAG	1 cut(s)	527
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	3 cut(s)	77, 479, 693
TaaI	ACNGT	1 cut(s)	709
TaiI	ACGT	2 cut(s)	87, 636
TaqI	TCGA	7 cut(s)	108, 114, 133, 398, 639, 740, 891
TasI	AATT	7 cut(s)	92, 144, 215, 227, 651, 818, 870
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	2 cut(s)	415, 488
Tru1I	TTAA	2 cut(s)	273, 911
Tru9I	TTAA	2 cut(s)	273, 911
TseFI	GTSAC	2 cut(s)	445, 556
Tsp45I	GTSAC	2 cut(s)	445, 556
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	2 cut(s)	298, 378
VpaK11BI	GGWCC	1 cut(s)	32
XagI	CCTNNNNNAGG	2 cut(s)	135, 830
XapI	RAATTY	1 cut(s)	227
XhoI	CTCGAG	1 cut(s)	890
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.