Rh7DG378200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003693
Physical Location & Seq
Reverse (-)
51376077 .. 51377262
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG378200.1

Sequence Viewer

Length: 1092 bp
ATGCATGTGCTGTCCCGAGGGTGGAATGCAGCTCAATTTGCTTCCAAGGCCGAGCTAGACGACATTTCTCACCCTCGAACAGGGGAAATATACTCCTCGCGCTTTCAAGTGTTGGGGGATGATCTCTCCGGAGAGGCGTTGTATCGCCGCGTCATCGAATTGGAGAGTAAATTTACAGTCTCTGAACACACTCCTACTTTGTTTGTAGAAAGCTTCAAGGCTAAAGATCTCGTTGAGGAGCCGGAGAAACTAGTGGAAGGCGGGATGGACATCCGGAAAGTAAAGGCTCCTGCACCGCAAGGGAGGAAAACCAAAAAACAGAAAGTCTCTCGTGTTGTCGCAGAAACGGCTCAAGCCGATTCTGAAATTGTCAGAGTCGACCCCCAGGGTGACAAAGAAACCGGAAGGCCCCTTCAGCTTGACTTTCCTCCCTCGTCGTGCAAGTCCACATCCGGTCCTCTAGCAGTCTCTATTCCAGGTGCTAACGCCGACATCCACCCAAGCAGTTCATCACCGTCCTTGAAACCCCGCTTGTGCTTATCTTTCCGCAGAGATGACGGCTCATACGTATCAGAGGGGGATCCAATTGCCTTCGACAAAGAAGCGTGCTTGGTTGTGGCACAATCCTTGGCTCTGAATATTGTTGACCACGATAAGCTCTCCCATCTGAGCTCGAGAGATCTCGCGGCGCAACTTGCCTTATGCTTACAGTCAGCCTCGTCAATGATTCAACACTTTGTGATGAGGACCGATGCCACCGAAGAAAGACTATGGAGTATTGTGCACAAGGCTCAAGAAGAAGCTCTGACTACTACAAATAATCTGGCGAAAGCACTTACCGCCCTCGAGCAAAAATCAAAAGAAGCTGAGGCCAAAGACAAAGAAATTAGTGAGCTGAAAGCTAAACTAATGAATGAGACCGCGGTCAGGTCTAAAGAATTTGAGCTGAACCAGAATGAAATCCTCAAATCTTCCTGCAAGTACTTCCGTTTGGGATGGGTTCAAGGCCAGCAAAACAATGAAGACAGGATTTTCGTCGAGCCGGAATCATTCGACGCGGAGGTGGGGCTAGACGCTTCAGACTATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

40.18

Weight (kDa)

5.31

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 378
AccII CGCG 5 cut(s) 100, 150, 686, 923, 1058
AccIII TCCGGA 2 cut(s) 128, 273
AclWI GGATC 2 cut(s) 575, 588
AcsI RAATTY 2 cut(s) 170, 938
AcuI CTGAAG 2 cut(s) 398, 1062
AdeI CACNNNGTG 1 cut(s) 739
AfaI GTAC 1 cut(s) 983
AfiI CCNNNNNNNGG 3 cut(s) 21, 80, 927
AgsI TTSAA 5 cut(s) 107, 217, 523, 731, 1004
AhlI ACTAGT 1 cut(s) 250
AjnI CCWGG 2 cut(s) 384, 475
Alw21I GWGCWC 2 cut(s) 674, 786
Alw26I GTCTC 4 cut(s) 184, 331, 472, 911
Alw44I GTGCAC 1 cut(s) 782
AlwI GGATC 2 cut(s) 575, 588
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 3 cut(s) 15, 673, 845
Aor13HI TCCGGA 2 cut(s) 128, 273
AoxI GGCC 4 cut(s) 48, 407, 870, 1006
ApaLI GTGCAC 1 cut(s) 782
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 2 cut(s) 170, 938
ArsI GACNNNNNNTTYG 2 cut(s) 1016, 1048
AspLEI GCGC 2 cut(s) 102, 691
AspS9I GGNCC 3 cut(s) 408, 455, 747
AsuHPI GGTGA 3 cut(s) 62, 401, 504
AvaI CYCGRG 3 cut(s) 15, 673, 845
AvaII GGWCC 2 cut(s) 455, 747
BaeGI GKGCMC 1 cut(s) 786
BamHI GGATCC 1 cut(s) 580
BanII GRGCYC 1 cut(s) 674
BauI CACGAG 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 1029
Bbv12I GWGCWC 2 cut(s) 674, 786
BbvCI CCTCAGC 1 cut(s) 867
BbvI GCAGC 1 cut(s) 41
BccI CCATC 3 cut(s) 259, 672, 990
BceAI ACGGC 2 cut(s) 363, 574
BciT130I CCWGG 2 cut(s) 386, 477
BcoDI GTCTC 4 cut(s) 184, 331, 472, 911
BcuI ACTAGT 1 cut(s) 250
BfaI CTAG 4 cut(s) 56, 251, 461, 1070
BglII AGATCT 2 cut(s) 226, 679
BisI GCNGC 3 cut(s) 30, 148, 687
BlsI GCNGC 3 cut(s) 31, 149, 688
BmcAI AGTACT 1 cut(s) 983
Bme1390I CCNGG 2 cut(s) 386, 477
Bme18I GGWCC 2 cut(s) 455, 747
BmeT110I CYCGRG 3 cut(s) 15, 673, 845
BmgT120I GGNCC 3 cut(s) 408, 455, 747
BmiI GGNNCC 4 cut(s) 240, 288, 410, 582
BmrFI CCNGG 2 cut(s) 386, 477
BmsI GCATC 1 cut(s) 742
BoxI GACNNNNGTC 1 cut(s) 923
BpiI GAAGAC 1 cut(s) 1029
Bpu10I CCTNAGC 1 cut(s) 867
BpuEI CTTGAG 2 cut(s) 336, 777
BsaAI YACGTR 1 cut(s) 568
BsaBI GATNNNNATC 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 911
BsaJI CCNNGG 6 cut(s) 16, 45, 384, 385, 627, 921
BsaWI WCCGGW 4 cut(s) 128, 273, 401, 452
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 80, 927
Bse8I GATNNNNATC 1 cut(s) 269
BseAI TCCGGA 2 cut(s) 128, 273
BseBI CCWGG 2 cut(s) 386, 477
BseDI CCNNGG 6 cut(s) 16, 45, 384, 385, 627, 921
BseGI GGATG 6 cut(s) 124, 270, 270, 449, 492, 1001
BseJI GATNNNNATC 1 cut(s) 269
BseLI CCNNNNNNNGG 3 cut(s) 21, 80, 927
BseMII CTCAG 2 cut(s) 659, 858
BseRI GAGGAG 2 cut(s) 85, 251
BseSI GKGCMC 1 cut(s) 786
BseXI GCAGC 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 276
Bsh1236I CGCG 5 cut(s) 100, 150, 686, 923, 1058
BshFI GGCC 4 cut(s) 50, 409, 872, 1008
BsiHKAI GWGCWC 2 cut(s) 674, 786
BsiHKCI CYCGRG 3 cut(s) 15, 673, 845
BsiSI CCGG 6 cut(s) 129, 242, 274, 402, 453, 1043
BslI CCNNNNNNNGG 3 cut(s) 21, 80, 927
BsmAI GTCTC 4 cut(s) 184, 331, 472, 911
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 4 cut(s) 50, 409, 872, 1008
Bso31I GGTCTC 1 cut(s) 911
BsoBI CYCGRG 3 cut(s) 15, 673, 845
Bsp1286I GDGCHC 2 cut(s) 674, 786
Bsp13I TCCGGA 2 cut(s) 128, 273
Bsp143I GATC 4 cut(s) 121, 226, 580, 679
BspANI GGCC 4 cut(s) 50, 409, 872, 1008
BspCNI CTCAG 2 cut(s) 660, 859
BspEI TCCGGA 2 cut(s) 128, 273
BspFNI CGCG 5 cut(s) 100, 150, 686, 923, 1058
BspLI GGNNCC 4 cut(s) 240, 288, 410, 582
BspPI GGATC 2 cut(s) 575, 588
BspTNI GGTCTC 1 cut(s) 911
BssECI CCNNGG 6 cut(s) 16, 45, 384, 385, 627, 921
BssMI GATC 4 cut(s) 121, 226, 580, 679
BssSI CACGAG 1 cut(s) 330
BssT1I CCWWGG 2 cut(s) 45, 627
Bst2BI CACGAG 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 386, 477
Bst4CI ACNGT 3 cut(s) 178, 516, 711
BstBAI YACGTR 1 cut(s) 568
BstC8I GCNNGC 2 cut(s) 607, 1010
BstDEI CTNAG 2 cut(s) 668, 867
BstDSI CCRYGG 1 cut(s) 921
BstENI CCTNNNNNAGG 1 cut(s) 78
BstF5I GGATG 6 cut(s) 124, 270, 270, 449, 492, 1001
BstFNI CGCG 5 cut(s) 100, 150, 686, 923, 1058
BstHHI GCGC 2 cut(s) 102, 691
BstKTI GATC 4 cut(s) 124, 229, 583, 682
BstMAI GTCTC 4 cut(s) 184, 331, 472, 911
BstMBI GATC 4 cut(s) 121, 226, 580, 679
BstMWI GCNNNNNNNGC 6 cut(s) 38, 47, 347, 415, 695, 839
BstNI CCWGG 2 cut(s) 386, 477
BstNSI RCATGY 1 cut(s) 8
BstPAI GACNNNNGTC 1 cut(s) 923
BstSCI CCNGG 2 cut(s) 384, 475
BstSLI GKGCMC 1 cut(s) 786
BstSNI TACGTA 1 cut(s) 568
BstUI CGCG 5 cut(s) 100, 150, 686, 923, 1058
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 1029
BstX2I RGATCY 3 cut(s) 226, 580, 679
BstYI RGATCY 3 cut(s) 226, 580, 679
BsuRI GGCC 4 cut(s) 50, 409, 872, 1008
BtgI CCRYGG 1 cut(s) 921
BtsCI GGATG 6 cut(s) 124, 270, 270, 449, 492, 1001
Cac8I GCNNGC 2 cut(s) 607, 1010
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 2 cut(s) 102, 691
Cfr13I GGNCC 3 cut(s) 408, 455, 747
Cfr42I CCGCGG 1 cut(s) 924
CseI GACGC 3 cut(s) 139, 1064, 1082
Csp6I GTAC 1 cut(s) 982
CviAII CATG 1 cut(s) 5
CviQI GTAC 1 cut(s) 982
DdeI CTNAG 2 cut(s) 668, 867
DpnI GATC 4 cut(s) 123, 228, 582, 681
DpnII GATC 4 cut(s) 121, 226, 580, 679
DraIII CACNNNGTG 1 cut(s) 739
Ecl136II GAGCTC 1 cut(s) 672
Eco105I TACGTA 1 cut(s) 568
Eco130I CCWWGG 2 cut(s) 45, 627
Eco24I GRGCYC 1 cut(s) 674
Eco31I GGTCTC 1 cut(s) 911
Eco47I GGWCC 2 cut(s) 455, 747
Eco53kI GAGCTC 1 cut(s) 672
Eco57I CTGAAG 2 cut(s) 398, 1062
Eco88I CYCGRG 3 cut(s) 15, 673, 845
EcoICRI GAGCTC 1 cut(s) 672
EcoNI CCTNNNNNAGG 1 cut(s) 78
EcoO109I RGGNCCY 1 cut(s) 408
EcoRII CCWGG 2 cut(s) 384, 475
EcoT14I CCWWGG 2 cut(s) 45, 627
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 674
ErhI CCWWGG 2 cut(s) 45, 627
FaeI CATG 1 cut(s) 8
FaiI YATR 6 cut(s) 6, 91, 565, 703, 772, 1086
FatI CATG 1 cut(s) 4
FauI CCCGC 2 cut(s) 254, 536
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 3 cut(s) 30, 148, 687
FokI GGATG 6 cut(s) 131, 257, 277, 436, 479, 1008
FriOI GRGCYC 1 cut(s) 674
Fsp4HI GCNGC 3 cut(s) 30, 148, 687
FspBI CTAG 4 cut(s) 56, 251, 461, 1070
GlaI GCGC 2 cut(s) 101, 690
GluI GCNGC 3 cut(s) 30, 148, 687
HaeIII GGCC 4 cut(s) 50, 409, 872, 1008
HapII CCGG 6 cut(s) 129, 242, 274, 402, 453, 1043
HgaI GACGC 3 cut(s) 139, 1064, 1082
HhaI GCGC 2 cut(s) 102, 691
Hin1II CATG 1 cut(s) 8
Hin6I GCGC 2 cut(s) 100, 689
HinP1I GCGC 2 cut(s) 100, 689
HincII GTYRAC 2 cut(s) 379, 646
HindII GTYRAC 2 cut(s) 379, 646
HindIII AAGCTT 1 cut(s) 211
HinfI GANTC 4 cut(s) 359, 375, 727, 1046
HpaII CCGG 6 cut(s) 129, 242, 274, 402, 453, 1043
HphI GGTGA 3 cut(s) 62, 401, 504
Hpy166II GTNNAC 4 cut(s) 379, 447, 646, 784
Hpy188I TCNGA 8 cut(s) 184, 364, 374, 574, 636, 669, 807, 1081
Hpy188III TCNNGA 5 cut(s) 15, 129, 274, 675, 794
Hpy8I GTNNAC 4 cut(s) 379, 447, 646, 784
Hpy99I CGWCG 3 cut(s) 439, 1040, 1058
HpyAV CCTTC 4 cut(s) 251, 399, 422, 601
HpyCH4III ACNGT 3 cut(s) 178, 516, 711
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 6 cut(s) 4, 29, 293, 441, 784, 978
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 47, 347, 415, 695, 839
HpyF3I CTNAG 2 cut(s) 668, 867
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 1 cut(s) 8
HspAI GCGC 2 cut(s) 100, 689
Kpn2I TCCGGA 2 cut(s) 128, 273
KspI CCGCGG 1 cut(s) 924
Kzo9I GATC 4 cut(s) 121, 226, 580, 679
LmnI GCTCC 2 cut(s) 238, 292
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 742
MaeI CTAG 4 cut(s) 56, 251, 461, 1070
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 1 cut(s) 389
MalI GATC 4 cut(s) 123, 228, 582, 681
MboI GATC 4 cut(s) 121, 226, 580, 679
MboII GAAGA 4 cut(s) 773, 809, 963, 1034
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 3 cut(s) 226, 580, 679
MhlI GDGCHC 2 cut(s) 674, 786
MluCI AATT 7 cut(s) 35, 158, 170, 366, 585, 885, 938
MlyI GAGTC 1 cut(s) 384
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 2 cut(s) 128, 273
MspA1I CMGCKG 1 cut(s) 923
MspI CCGG 6 cut(s) 129, 242, 274, 402, 453, 1043
MspR9I CCNGG 2 cut(s) 386, 477
MunI CAATTG 1 cut(s) 585
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 2 cut(s) 386, 477
MvnI CGCG 5 cut(s) 100, 150, 686, 923, 1058
MwoI GCNNNNNNNGC 6 cut(s) 38, 47, 347, 415, 695, 839
NdeII GATC 4 cut(s) 121, 226, 580, 679
NlaIII CATG 1 cut(s) 8
NlaIV GGNNCC 4 cut(s) 240, 288, 410, 582
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 389
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeR7I CTCGAG 2 cut(s) 673, 845
PasI CCCWGGG 1 cut(s) 385
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 3 cut(s) 359, 727, 1046
PkrI GCNGC 3 cut(s) 31, 149, 688
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
Ppu21I YACGTR 1 cut(s) 568
PshAI GACNNNNGTC 1 cut(s) 923
Psp124BI GAGCTC 1 cut(s) 674
Psp6I CCWGG 2 cut(s) 384, 475
PspGI CCWGG 2 cut(s) 384, 475
PspN4I GGNNCC 4 cut(s) 240, 288, 410, 582
PspPI GGNCC 3 cut(s) 408, 455, 747
PspXI VCTCGAGB 1 cut(s) 845
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 3 cut(s) 226, 580, 679
RsaI GTAC 1 cut(s) 983
RsaNI GTAC 1 cut(s) 982
SacI GAGCTC 1 cut(s) 674
SacII CCGCGG 1 cut(s) 924
SalI GTCGAC 1 cut(s) 377
SatI GCNGC 3 cut(s) 30, 148, 687
Sau3AI GATC 4 cut(s) 121, 226, 580, 679
Sau96I GGNCC 3 cut(s) 408, 455, 747
ScaI AGTACT 1 cut(s) 983
SchI GAGTC 1 cut(s) 384
ScrFI CCNGG 2 cut(s) 386, 477
SduI GDGCHC 2 cut(s) 674, 786
SfaNI GCATC 1 cut(s) 742
Sfr274I CTCGAG 2 cut(s) 673, 845
Sfr303I CCGCGG 1 cut(s) 924
SgrBI CCGCGG 1 cut(s) 924
SinI GGWCC 2 cut(s) 455, 747
SlaI CTCGAG 2 cut(s) 673, 845
SmlI CTYRAG 4 cut(s) 351, 673, 792, 845
SmoI CTYRAG 4 cut(s) 351, 673, 792, 845
SnaBI TACGTA 1 cut(s) 568
SpeI ACTAGT 1 cut(s) 250
Sse9I AATT 7 cut(s) 35, 158, 170, 366, 585, 885, 938
SspI AATATT 1 cut(s) 640
SspMI CTAG 4 cut(s) 56, 251, 461, 1070
SstI GAGCTC 1 cut(s) 674
StyD4I CCNGG 2 cut(s) 384, 475
StyI CCWWGG 2 cut(s) 45, 627
TaaI ACNGT 3 cut(s) 178, 516, 711
TaiI ACGT 1 cut(s) 570
TaqI TCGA 8 cut(s) 76, 156, 378, 594, 674, 846, 1038, 1053
TaqII GACCGA 1 cut(s) 764
TasI AATT 7 cut(s) 35, 158, 170, 366, 585, 885, 938
TatI WGTACW 1 cut(s) 981
TauI GCSGC 2 cut(s) 150, 689
TfiI GAWTC 3 cut(s) 359, 727, 1046
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 4 cut(s) 498, 926, 972, 1035
TspGWI ACGGA 1 cut(s) 977
VneI GTGCAC 1 cut(s) 782
VpaK11BI GGWCC 2 cut(s) 455, 747
XagI CCTNNNNNAGG 1 cut(s) 78
XapI RAATTY 2 cut(s) 170, 938
XceI RCATGY 1 cut(s) 8
XhoI CTCGAG 2 cut(s) 673, 845
XmiI GTMKAC 1 cut(s) 378
XspI CTAG 4 cut(s) 56, 251, 461, 1070
ZrmI AGTACT 1 cut(s) 983
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.