Rroxscaffold_3G00235530

Exosome component 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003693
Physical Location & Seq
Forward (+)
22542321 .. 22543145
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00235530.1

Sequence Viewer

Length: 561 bp
ATGCCTTCCAAGGACTGCAAGGTACAGCTTAATTTCAGCATCCACGCCGACTTGCCGAACGAGACCCCCGTCGGCCGTAGGAGGACAAAAGGGAAGGAAGCCATAGCTGGCACGCCACCGACGGACCTCCTTTTCCTCAAAGGAAATATTCCTTTGGTTCCCCACTTGTGCTTTTGTGCTGTTTTGGGTTGTTCCACCATTTCATCCGAGCGGAGAGCCAAGGGAACAGAGGAGCAGGAAGGAGAAGGAAGACGACGAGGGGTTCCGGTTGGTGTGTGGGAAGAAGAAGAAGGGGGATCGACCTTGTCCAAGGACAACAAGACTAGCAAGCCCAAGGTCTCCTTTCATGTTCCCTCCATTCGCAAGCCTCGGGAGGAGTTTAACATTCTCGTTAACAATTCAAACCAAAACCATTTGAGGAATCGAGGAAATGGGAGGAGGTTCGACTTTGAAAGCGCAATCATGGCGGATGATACCGGTGGCTCTGCTATTGATGGTTGGGTCCTTCTATGCTGGAACTCTCTTTCGCCAAGGTGCTCCCAACTACATCTCTCGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000178 GO:0000460 GO:0000785 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0008298 GO:0008334 GO:0008408 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0016458 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031047 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032259 GO:0032268 GO:0032270 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040029 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0045934 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051641 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071030 GO:0071033 GO:0071034 GO:0071035 GO:0071043 GO:0071044 GO:0071046 GO:0071048 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902275 GO:1902464 GO:1902466 GO:1902494 GO:1904356 GO:1904357 GO:1904872 GO:1905269 GO:1905354 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DNA_pol_A_exo1 HRDC PMC2NT

Protein Analysis

186

Amino Acids

20.51

Weight (kDa)

8.81

Isoelectric Point (pI)

59.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 211
AciI CCGC 2 cut(s) 211, 467
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 1 cut(s) 73
AfaI GTAC 1 cut(s) 24
AgeI ACCGGT 1 cut(s) 476
AgsI TTSAA 2 cut(s) 402, 452
AluBI AGCT 2 cut(s) 28, 107
AluI AGCT 2 cut(s) 28, 107
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 2 cut(s) 56, 343
AlwI GGATC 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 369
AoxI GGCC 1 cut(s) 73
AsiGI ACCGGT 1 cut(s) 476
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 2 cut(s) 124, 502
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 2 cut(s) 124, 502
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 539
BccI CCATC 1 cut(s) 488
BceAI ACGGC 1 cut(s) 60
BcoDI GTCTC 2 cut(s) 56, 343
BfaI CTAG 1 cut(s) 324
Bme18I GGWCC 2 cut(s) 124, 502
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 2 cut(s) 124, 502
BmiI GGNNCC 3 cut(s) 159, 264, 503
BmsI GCATC 1 cut(s) 48
BoxI GACNNNNGTC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 256
BsaI GGTCTC 2 cut(s) 56, 343
BsaJI CCNNGG 6 cut(s) 9, 219, 309, 333, 368, 530
BsaWI WCCGGW 2 cut(s) 265, 476
Bse118I RCCGGY 1 cut(s) 476
BseDI CCNNGG 6 cut(s) 9, 219, 309, 333, 368, 530
BseGI GGATG 3 cut(s) 39, 203, 475
BseRI GAGGAG 3 cut(s) 245, 389, 451
BseX3I CGGCCG 1 cut(s) 73
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 1 cut(s) 75
BshTI ACCGGT 1 cut(s) 476
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 539
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 2 cut(s) 266, 477
BsmAI GTCTC 2 cut(s) 56, 343
BsnI GGCC 1 cut(s) 75
Bso31I GGTCTC 2 cut(s) 56, 343
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 539
Bsp143I GATC 1 cut(s) 296
BspACI CCGC 2 cut(s) 211, 467
BspANI GGCC 1 cut(s) 75
BspLI GGNNCC 3 cut(s) 159, 264, 503
BspPI GGATC 1 cut(s) 304
BspTNI GGTCTC 2 cut(s) 56, 343
BsrBI CCGCTC 1 cut(s) 211
BsrFI RCCGGY 1 cut(s) 476
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 6 cut(s) 9, 219, 309, 333, 368, 530
BssMI GATC 1 cut(s) 296
BssT1I CCWWGG 5 cut(s) 9, 219, 309, 333, 530
BstC8I GCNNGC 4 cut(s) 109, 113, 329, 365
BstDEI CTNAG 1 cut(s) 558
BstF5I GGATG 3 cut(s) 39, 203, 475
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 1 cut(s) 299
BstMAI GTCTC 2 cut(s) 56, 343
BstMBI GATC 1 cut(s) 296
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstPAI GACNNNNGTC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 256
BstZI CGGCCG 1 cut(s) 73
BsuRI GGCC 1 cut(s) 75
BtsCI GGATG 3 cut(s) 39, 203, 475
Cac8I GCNNGC 4 cut(s) 109, 113, 329, 365
CfoI GCGC 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 2 cut(s) 124, 502
Csp6I GTAC 1 cut(s) 23
CspAI ACCGGT 1 cut(s) 476
CviAII CATG 2 cut(s) 347, 463
CviJI RGCY 9 cut(s) 28, 75, 101, 107, 218, 331, 367, 483, 557
CviKI_1 RGCY 9 cut(s) 28, 75, 101, 107, 218, 331, 367, 483, 557
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 558
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 73
EagI CGGCCG 1 cut(s) 73
EciI GGCGGA 1 cut(s) 482
EclXI CGGCCG 1 cut(s) 73
Eco130I CCWWGG 5 cut(s) 9, 219, 309, 333, 530
Eco31I GGTCTC 2 cut(s) 56, 343
Eco47I GGWCC 2 cut(s) 124, 502
Eco52I CGGCCG 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 502
EcoT14I CCWWGG 5 cut(s) 9, 219, 309, 333, 530
ErhI CCWWGG 5 cut(s) 9, 219, 309, 333, 530
FaeI CATG 2 cut(s) 350, 466
FaiI YATR 4 cut(s) 104, 348, 464, 511
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FatI CATG 2 cut(s) 346, 462
FokI GGATG 3 cut(s) 26, 190, 482
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 457
HaeIII GGCC 1 cut(s) 75
HapII CCGG 2 cut(s) 266, 477
HhaI GCGC 1 cut(s) 458
Hin1II CATG 2 cut(s) 350, 466
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 1 cut(s) 421
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 2 cut(s) 266, 477
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 1 cut(s) 371
Hpy8I GTNNAC 1 cut(s) 394
Hpy99I CGWCG 3 cut(s) 74, 124, 258
HpyAV CCTTC 6 cut(s) 15, 88, 233, 239, 284, 515
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 1 cut(s) 558
Hsp92II CATG 2 cut(s) 350, 466
HspAI GCGC 1 cut(s) 456
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 1 cut(s) 296
LmnI GCTCC 2 cut(s) 232, 542
LpnPI CCDG 5 cut(s) 93, 221, 279, 490, 499
LweI GCATC 1 cut(s) 48
MaeI CTAG 1 cut(s) 324
MalI GATC 1 cut(s) 298
MbiI CCGCTC 1 cut(s) 211
MboI GATC 1 cut(s) 296
MboII GAAGA 4 cut(s) 261, 293, 296, 299
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 2 cut(s) 31, 397
MseI TTAA 3 cut(s) 30, 381, 393
MspI CCGG 2 cut(s) 266, 477
MwoI GCNNNNNNNGC 1 cut(s) 464
NdeII GATC 1 cut(s) 296
NlaIII CATG 2 cut(s) 350, 466
NlaIV GGNNCC 3 cut(s) 159, 264, 503
NmeAIII GCCGAG 1 cut(s) 533
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 1 cut(s) 421
PflFI GACNNNGTC 1 cut(s) 304
PinAI ACCGGT 1 cut(s) 476
PpuMI RGGWCCY 1 cut(s) 502
PshAI GACNNNNGTC 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 502
PspN4I GGNNCC 3 cut(s) 159, 264, 503
PspPI GGNCC 2 cut(s) 124, 502
PspPPI RGGWCCY 1 cut(s) 502
PsyI GACNNNGTC 1 cut(s) 304
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 3 cut(s) 30, 381, 393
Sau3AI GATC 1 cut(s) 296
Sau96I GGNCC 2 cut(s) 124, 502
SduI GDGCHC 1 cut(s) 539
SetI ASST 8 cut(s) 24, 30, 109, 129, 305, 339, 443, 536
SfaNI GCATC 1 cut(s) 48
SinI GGWCC 2 cut(s) 124, 502
Sse9I AATT 2 cut(s) 31, 397
SsiI CCGC 2 cut(s) 211, 467
SspI AATATT 1 cut(s) 148
SspMI CTAG 1 cut(s) 324
StyI CCWWGG 5 cut(s) 9, 219, 309, 333, 530
TaqI TCGA 3 cut(s) 299, 424, 444
TasI AATT 2 cut(s) 31, 397
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 3 cut(s) 30, 381, 393
Tru9I TTAA 3 cut(s) 30, 381, 393
TspDTI ATGAA 2 cut(s) 192, 335
TspGWI ACGGA 1 cut(s) 137
Tth111I GACNNNGTC 1 cut(s) 304
VpaK11BI GGWCC 2 cut(s) 124, 502
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.