Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003693

Physical Location & Seq

Genomic Coordinates Forward (+)

50960707 .. 50961652

Gene Structure 946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG346400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAAAACCAAAAAACAGAAAGTCTCTCGTGTTGTCGCAGAAACGGCTCAAGCCGATTCTGAAATTGTCAGAGTCGACTCCTGGGGCGACAAAGAAACCGGAGGGCCCCTTCAACTTGACTTTCCTCCCTCGCCGTGCAAGTCCACATCCGGTCCTCTAGCAGTCTCTATTCCAGGTGCTAACGCCGACATCCACCCAAGGAGTTCATCACCGTCCTTGAAACCCCGCTTGTGCTTATCTTTCCGCAGAGATGACGGCTCATACGTATCAGAGGGGGATCCAATTACCTTCGACAAAGAAGCGTGCTTGGCCGTGGCACAATCCTTGGCTCTGAATACTGTCGACCACGATAAGCTCTCCCATCTGAGCTCGAGAGATCTCGCGGCGCAACTTGCCTTATGCTTACAGTCAGCCTCGTCGATGACTCAACATATTGTGATGAGGACTGATGCCACCGAAGAAAGACTATGGAGTATTATGCACAAGGCTCGAGAAGAAGCTCTGACTGCTACAAACAATCTAGCGAAAGCATTTACCGCCCTCGAGCAGAAATCAAAAGAGGCTGAGGCCAAAGACAAAGAAATTGGCAAGCTGAAAGCTAAACTGATAAATGAGACCGCGGTTAGGTCTAAAGAATTTGAGCTGAACGAGAATGAAATCCTCAAATCTTCCTGCAAGTACTTCCATTTGGGATGGGTTCAAGGCCAGCAAAACAATGAAGACAGGATTTTCGCCGGGCCGGAATCATTTGACGCGGAGGTGGGGCTGGACGCTTCAGACTACGATTGGATTCTGGGGATGAAGCTAGAAGATAGGCCCACGGACGAAGAAGCTGACGATGATGTCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

31.15

Weight (kDa)

5.01

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05721
rosa_chinensis	RchiOBHm_Chr1g0343511
rosa_laevigata	RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661
rosa_multiflora	Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004
rosa_roxburghii	Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460
rosa_samantha	Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	842
AccI	GTMKAC	2 cut(s)	75, 342
AccII	CGCG	3 cut(s)	383, 620, 755
AciI	CCGC	7 cut(s)	226, 244, 383, 537, 618, 620, 755
AclWI	GGATC	2 cut(s)	272, 285
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	759
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	1 cut(s)	624
AgsI	TTSAA	3 cut(s)	113, 220, 701
AjnI	CCWGG	2 cut(s)	80, 172
AluBI	AGCT	8 cut(s)	355, 369, 500, 592, 599, 643, 805, 833
AluI	AGCT	8 cut(s)	355, 369, 500, 592, 599, 643, 805, 833
Alw21I	GWGCWC	1 cut(s)	371
Alw26I	GTCTC	3 cut(s)	28, 169, 608
AlwI	GGATC	2 cut(s)	272, 285
Ama87I	CYCGRG	3 cut(s)	370, 489, 542
AoxI	GGCC	6 cut(s)	104, 309, 567, 703, 737, 815
ApaI	GGGCCC	1 cut(s)	108
ApoI	RAATTY	1 cut(s)	635
ArsI	GACNNNNNNTTYG	2 cut(s)	713, 745
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	5 cut(s)	104, 105, 152, 737, 816
AsuC2I	CCSGG	1 cut(s)	736
AsuHPI	GGTGA	1 cut(s)	201
AvaI	CYCGRG	3 cut(s)	370, 489, 542
AvaII	GGWCC	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	277
BanII	GRGCYC	2 cut(s)	108, 371
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	726
Bbv12I	GWGCWC	1 cut(s)	371
BbvCI	CCTCAGC	1 cut(s)	564
BccI	CCATC	2 cut(s)	369, 687
BceAI	ACGGC	4 cut(s)	60, 118, 271, 296
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BciT130I	CCWGG	2 cut(s)	82, 174
BcnI	CCSGG	1 cut(s)	736
BcoDI	GTCTC	3 cut(s)	28, 169, 608
BfaI	CTAG	3 cut(s)	158, 521, 806
BglII	AGATCT	1 cut(s)	376
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
BmcAI	AGTACT	1 cut(s)	680
Bme1390I	CCNGG	3 cut(s)	82, 174, 736
Bme18I	GGWCC	1 cut(s)	152
BmeT110I	CYCGRG	3 cut(s)	370, 489, 542
BmgT120I	GGNCC	5 cut(s)	104, 105, 152, 737, 816
BmiI	GGNNCC	3 cut(s)	106, 107, 279
BmrFI	CCNGG	3 cut(s)	82, 174, 736
BmsI	GCATC	1 cut(s)	439
BpiI	GAAGAC	1 cut(s)	726
Bpu10I	CCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	736
BsaAI	YACGTR	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	6 cut(s)	81, 197, 312, 324, 618, 819
BsaWI	WCCGGW	2 cut(s)	98, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	624
BseBI	CCWGG	2 cut(s)	82, 174
BseDI	CCNNGG	6 cut(s)	81, 197, 312, 324, 618, 819
BseGI	GGATG	4 cut(s)	146, 189, 698, 804
BseLI	CCNNNNNNNGG	1 cut(s)	624
BseMII	CTCAG	2 cut(s)	356, 555
BseSI	GKGCMC	1 cut(s)	108
Bsh1236I	CGCG	3 cut(s)	383, 620, 755
BshFI	GGCC	6 cut(s)	106, 311, 569, 705, 739, 817
BsiHKAI	GWGCWC	1 cut(s)	371
BsiHKCI	CYCGRG	3 cut(s)	370, 489, 542
BsiSI	CCGG	4 cut(s)	99, 150, 735, 740
BslI	CCNNNNNNNGG	1 cut(s)	624
BsmAI	GTCTC	3 cut(s)	28, 169, 608
BsnI	GGCC	6 cut(s)	106, 311, 569, 705, 739, 817
Bso31I	GGTCTC	1 cut(s)	608
BsoBI	CYCGRG	3 cut(s)	370, 489, 542
Bsp120I	GGGCCC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	108, 371
Bsp143I	GATC	2 cut(s)	277, 376
BspACI	CCGC	7 cut(s)	226, 244, 383, 537, 618, 620, 755
BspANI	GGCC	6 cut(s)	106, 311, 569, 705, 739, 817
BspCNI	CTCAG	2 cut(s)	357, 556
BspFNI	CGCG	3 cut(s)	383, 620, 755
BspLI	GGNNCC	3 cut(s)	106, 107, 279
BspPI	GGATC	2 cut(s)	272, 285
BspTNI	GGTCTC	1 cut(s)	608
BssECI	CCNNGG	6 cut(s)	81, 197, 312, 324, 618, 819
BssMI	GATC	2 cut(s)	277, 376
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	2 cut(s)	197, 324
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	2 cut(s)	82, 174
Bst4CI	ACNGT	3 cut(s)	213, 340, 408
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	3 cut(s)	304, 590, 707
BstDEI	CTNAG	2 cut(s)	365, 564
BstDSI	CCRYGG	3 cut(s)	312, 618, 819
BstF5I	GGATG	4 cut(s)	146, 189, 698, 804
BstFNI	CGCG	3 cut(s)	383, 620, 755
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	2 cut(s)	280, 379
BstMAI	GTCTC	3 cut(s)	28, 169, 608
BstMBI	GATC	2 cut(s)	277, 376
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 308, 392, 506, 536
BstNI	CCWGG	2 cut(s)	82, 174
BstSCI	CCNGG	3 cut(s)	80, 172, 734
BstSLI	GKGCMC	1 cut(s)	108
BstSNI	TACGTA	1 cut(s)	265
BstUI	CGCG	3 cut(s)	383, 620, 755
BstV2I	GAAGAC	1 cut(s)	726
BstX2I	RGATCY	2 cut(s)	277, 376
BstYI	RGATCY	2 cut(s)	277, 376
BsuRI	GGCC	6 cut(s)	106, 311, 569, 705, 739, 817
BtgI	CCRYGG	3 cut(s)	312, 618, 819
BtsCI	GGATG	4 cut(s)	146, 189, 698, 804
Cac8I	GCNNGC	3 cut(s)	304, 590, 707
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	5 cut(s)	104, 105, 152, 737, 816
Cfr42I	CCGCGG	1 cut(s)	621
CseI	GACGC	2 cut(s)	761, 779
Csp6I	GTAC	1 cut(s)	679
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	2 cut(s)	365, 564
DpnI	GATC	2 cut(s)	279, 378
DpnII	GATC	2 cut(s)	277, 376
DrdI	GACNNNNNNGTC	1 cut(s)	842
DseDI	GACNNNNNNGTC	1 cut(s)	842
EaeI	YGGCCR	1 cut(s)	309
Ecl136II	GAGCTC	1 cut(s)	369
Eco105I	TACGTA	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	197, 324
Eco24I	GRGCYC	2 cut(s)	108, 371
Eco31I	GGTCTC	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	759
Eco88I	CYCGRG	3 cut(s)	370, 489, 542
EcoICRI	GAGCTC	1 cut(s)	369
EcoO109I	RGGNCCY	2 cut(s)	104, 105
EcoRII	CCWGG	2 cut(s)	80, 172
EcoT14I	CCWWGG	2 cut(s)	197, 324
EcoT38I	GRGCYC	2 cut(s)	108, 371
ErhI	CCWWGG	2 cut(s)	197, 324
FaiI	YATR	5 cut(s)	262, 400, 432, 469, 479
FauI	CCCGC	1 cut(s)	233
FblI	GTMKAC	2 cut(s)	75, 342
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	4 cut(s)	133, 176, 705, 811
FriOI	GRGCYC	2 cut(s)	108, 371
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	3 cut(s)	158, 521, 806
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	1 cut(s)	384
HaeIII	GGCC	6 cut(s)	106, 311, 569, 705, 739, 817
HapII	CCGG	4 cut(s)	99, 150, 735, 740
HgaI	GACGC	2 cut(s)	761, 779
HhaI	GCGC	1 cut(s)	388
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HincII	GTYRAC	2 cut(s)	76, 343
HindII	GTYRAC	2 cut(s)	76, 343
HinfI	GANTC	6 cut(s)	56, 72, 77, 424, 743, 790
HpaII	CCGG	4 cut(s)	99, 150, 735, 740
HphI	GGTGA	1 cut(s)	201
Hpy166II	GTNNAC	3 cut(s)	76, 144, 343
Hpy188I	TCNGA	7 cut(s)	61, 71, 271, 333, 366, 504, 778
Hpy188III	TCNNGA	2 cut(s)	372, 491
Hpy8I	GTNNAC	3 cut(s)	76, 144, 343
Hpy99I	CGWCG	1 cut(s)	421
HpyAV	CCTTC	2 cut(s)	119, 298
HpyCH4III	ACNGT	3 cut(s)	213, 340, 408
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	138, 481, 675
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 308, 392, 506, 536
HpyF3I	CTNAG	2 cut(s)	365, 564
HpySE526I	ACGT	1 cut(s)	264
HspAI	GCGC	1 cut(s)	386
KspI	CCGCGG	1 cut(s)	621
Kzo9I	GATC	2 cut(s)	277, 376
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	3 cut(s)	158, 521, 806
MaeII	ACGT	1 cut(s)	264
MalI	GATC	2 cut(s)	279, 378
MboI	GATC	2 cut(s)	277, 376
MboII	GAAGA	6 cut(s)	470, 506, 660, 731, 821, 839
MflI	RGATCY	2 cut(s)	277, 376
MhlI	GDGCHC	2 cut(s)	108, 371
MluCI	AATT	4 cut(s)	63, 282, 582, 635
MlyI	GAGTC	3 cut(s)	71, 81, 418
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	4 cut(s)	99, 150, 735, 740
MspR9I	CCNGG	3 cut(s)	82, 174, 736
MvaI	CCWGG	2 cut(s)	82, 174
MvnI	CGCG	3 cut(s)	383, 620, 755
MwoI	GCNNNNNNNGC	5 cut(s)	44, 308, 392, 506, 536
NciI	CCSGG	1 cut(s)	736
NdeII	GATC	2 cut(s)	277, 376
NlaIV	GGNNCC	3 cut(s)	106, 107, 279
PaeR7I	CTCGAG	3 cut(s)	370, 489, 542
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PfeI	GAWTC	3 cut(s)	56, 743, 790
PkrI	GCNGC	1 cut(s)	385
PleI	GAGTC	3 cut(s)	71, 80, 418
PpsI	GAGTC	3 cut(s)	71, 80, 418
Ppu21I	YACGTR	1 cut(s)	265
Psp124BI	GAGCTC	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	80, 172
PspGI	CCWGG	2 cut(s)	80, 172
PspN4I	GGNNCC	3 cut(s)	106, 107, 279
PspOMI	GGGCCC	1 cut(s)	104
PspPI	GGNCC	5 cut(s)	104, 105, 152, 737, 816
PspXI	VCTCGAGB	1 cut(s)	542
PsuI	RGATCY	2 cut(s)	277, 376
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
SacI	GAGCTC	1 cut(s)	371
SacII	CCGCGG	1 cut(s)	621
SalI	GTCGAC	2 cut(s)	74, 341
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	2 cut(s)	277, 376
Sau96I	GGNCC	5 cut(s)	104, 105, 152, 737, 816
ScaI	AGTACT	1 cut(s)	680
SchI	GAGTC	3 cut(s)	71, 81, 418
ScrFI	CCNGG	3 cut(s)	82, 174, 736
SduI	GDGCHC	2 cut(s)	108, 371
SfaNI	GCATC	1 cut(s)	439
Sfr274I	CTCGAG	3 cut(s)	370, 489, 542
Sfr303I	CCGCGG	1 cut(s)	621
SgrBI	CCGCGG	1 cut(s)	621
SinI	GGWCC	1 cut(s)	152
SlaI	CTCGAG	3 cut(s)	370, 489, 542
SmlI	CTYRAG	4 cut(s)	48, 370, 489, 542
SmoI	CTYRAG	4 cut(s)	48, 370, 489, 542
SnaBI	TACGTA	1 cut(s)	265
Sse9I	AATT	4 cut(s)	63, 282, 582, 635
SsiI	CCGC	7 cut(s)	226, 244, 383, 537, 618, 620, 755
SspMI	CTAG	3 cut(s)	158, 521, 806
SstI	GAGCTC	1 cut(s)	371
StyD4I	CCNGG	3 cut(s)	80, 172, 734
StyI	CCWWGG	2 cut(s)	197, 324
TaaI	ACNGT	3 cut(s)	213, 340, 408
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	7 cut(s)	75, 291, 342, 371, 419, 490, 543
TasI	AATT	4 cut(s)	63, 282, 582, 635
TatI	WGTACW	1 cut(s)	678
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	3 cut(s)	56, 743, 790
TspDTI	ATGAA	5 cut(s)	17, 195, 669, 732, 815
TspGWI	ACGGA	1 cut(s)	836
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	635
XhoI	CTCGAG	3 cut(s)	370, 489, 542
XmiI	GTMKAC	2 cut(s)	75, 342
XspI	CTAG	3 cut(s)	158, 521, 806
ZrmI	AGTACT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.