Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003693

Physical Location & Seq

Genomic Coordinates Forward (+)

51183731 .. 51184396

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019379

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCCCCCAAGGACCTTAAAGTTCAGCTCAATTTCAGCATCTGCGCTGACCTTCCTGAAGAGGCTCATGTCGACTGCGGGAGGAGCAAAGGGAAAGGGACTGCGGCTGACACTAGCCCAGAGTCCAAGACGTCTAACGCTCCAATCCCAATTTCTTCTGACGATTCTTCTGATCGTTCCAGATCAGTTGATGTCTACTTCAATGTGCAGCTACCCGGCGTCGCCTTCGGGCTTAGCTTTCCCATTTGGAGATGGATTCTCGGAAAACTGATCTTGGAAACAGTTCCCGAGATGCCAAAATGGACGTCGACTGTTCCCGTCCCCGCCGCCCAGGCCGTGATCCAGCAGCTCAAAACTGAGGTCAGGATAGCAAAAGAGGGACAGGAGCGAGCTGCTGCAGAAGCCAGCAATCTTCAACAAAGAGAGAGGTCTGCTGATAGTATTCGGGCTACCGCTTTAGAAGAAAGATACCGTCACGGGGTCCATGCCTACCGTGAGAGGATCATCCTCCTCTTTCCCAATATAGATCGCAACTGTCTCCCTTTCTACTTGGCAAACAACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

20.94

Weight (kDa)

6.84

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05721
rosa_chinensis	RchiOBHm_Chr1g0343511
rosa_laevigata	RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661
rosa_multiflora	Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004
rosa_roxburghii	Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460
rosa_samantha	Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	134, 308
AccI	GTMKAC	3 cut(s)	72, 195, 308
AciI	CCGC	5 cut(s)	78, 104, 324, 327, 453
AclWI	GGATC	2 cut(s)	334, 509
AcuI	CTGAAG	1 cut(s)	78
AcyI	GRCGYC	3 cut(s)	131, 219, 305
AfiI	CCNNNNNNNGG	1 cut(s)	478
AgsI	TTSAA	2 cut(s)	202, 416
AjnI	CCWGG	1 cut(s)	330
AjuI	GAANNNNNNNTTGG	2 cut(s)	136, 168
AluBI	AGCT	5 cut(s)	28, 211, 237, 349, 392
AluI	AGCT	5 cut(s)	28, 211, 237, 349, 392
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	2 cut(s)	334, 509
AlwNI	CAGNNNCTG	1 cut(s)	42
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	4 cut(s)	208, 346, 392, 395
ArsI	GACNNNNNNTTYG	4 cut(s)	290, 322, 345, 377
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	13, 481
AsuC2I	CCSGG	1 cut(s)	216
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	2 cut(s)	13, 481
BbvI	GCAGC	4 cut(s)	220, 358, 379, 382
BccI	CCATC	1 cut(s)	246
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	332
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	396
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	6 cut(s)	105, 209, 327, 347, 393, 396
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	6 cut(s)	106, 210, 328, 348, 394, 397
Bme1390I	CCNGG	2 cut(s)	216, 332
Bme18I	GGWCC	2 cut(s)	13, 481
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	13, 481
BmiI	GGNNCC	1 cut(s)	482
BmrFI	CCNGG	2 cut(s)	216, 332
BmsI	GCATC	2 cut(s)	48, 282
Bpu1102I	GCTNAGC	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	216
BsaHI	GRCGYC	3 cut(s)	131, 219, 305
BsaJI	CCNNGG	2 cut(s)	9, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	9, 330
BseGI	GGATG	1 cut(s)	504
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	2 cut(s)	97, 500
BseXI	GCAGC	4 cut(s)	220, 358, 379, 382
BsgI	GTGCAG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	3 cut(s)	112, 305, 393
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	1 cut(s)	542
BsmFI	GGGAC	3 cut(s)	112, 305, 393
BsnI	GGCC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	287
Bsp143I	GATC	6 cut(s)	172, 182, 270, 339, 501, 526
Bsp1720I	GCTNAGC	1 cut(s)	233
BspACI	CCGC	5 cut(s)	78, 104, 324, 327, 453
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	482
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	2 cut(s)	334, 509
BssECI	CCNNGG	2 cut(s)	9, 330
BssMI	GATC	6 cut(s)	172, 182, 270, 339, 501, 526
BssNI	GRCGYC	3 cut(s)	131, 219, 305
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	5 cut(s)	283, 313, 473, 494, 536
Bst6I	CTCTTC	1 cut(s)	54
BstACI	GRCGYC	3 cut(s)	131, 219, 305
BstC8I	GCNNGC	2 cut(s)	390, 406
BstDEI	CTNAG	2 cut(s)	233, 357
BstF5I	GGATG	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	6 cut(s)	175, 185, 273, 342, 504, 529
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	6 cut(s)	172, 182, 270, 339, 501, 526
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 332, 401
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	214, 330
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	4 cut(s)	220, 358, 379, 382
BsuRI	GGCC	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	504
Cac8I	GCNNGC	2 cut(s)	390, 406
CaiI	CAGNNNCTG	1 cut(s)	42
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	13, 481
CseI	GACGC	1 cut(s)	208
CviAII	CATG	2 cut(s)	68, 485
DdeI	CTNAG	2 cut(s)	233, 357
DpnI	GATC	6 cut(s)	174, 184, 272, 341, 503, 528
DpnII	GATC	6 cut(s)	172, 182, 270, 339, 501, 526
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	13, 481
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	2 cut(s)	71, 488
FaiI	YATR	3 cut(s)	69, 486, 524
FaqI	GGGAC	3 cut(s)	112, 305, 393
FatI	CATG	2 cut(s)	67, 484
FauI	CCCGC	2 cut(s)	71, 331
FblI	GTMKAC	3 cut(s)	72, 195, 308
Fnu4HI	GCNGC	6 cut(s)	105, 209, 327, 347, 393, 396
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	6 cut(s)	105, 209, 327, 347, 393, 396
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	6 cut(s)	105, 209, 327, 347, 393, 396
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	3 cut(s)	131, 219, 305
Hin1II	CATG	2 cut(s)	71, 488
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	2 cut(s)	73, 309
HindII	GTYRAC	2 cut(s)	73, 309
HinfI	GANTC	3 cut(s)	122, 164, 256
HpaII	CCGG	1 cut(s)	216
Hpy166II	GTNNAC	3 cut(s)	73, 196, 309
Hpy188I	TCNGA	3 cut(s)	160, 172, 263
Hpy188III	TCNNGA	4 cut(s)	56, 180, 287, 364
Hpy8I	GTNNAC	3 cut(s)	73, 196, 309
Hpy99I	CGWCG	2 cut(s)	224, 310
HpyAV	CCTTC	2 cut(s)	62, 235
HpyCH4III	ACNGT	5 cut(s)	283, 313, 473, 494, 536
HpyCH4IV	ACGT	2 cut(s)	131, 305
HpyCH4V	TGCA	2 cut(s)	208, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 332, 401
HpyF3I	CTNAG	2 cut(s)	233, 357
HpySE526I	ACGT	2 cut(s)	131, 305
Hsp92I	GRCGYC	3 cut(s)	131, 219, 305
Hsp92II	CATG	2 cut(s)	71, 488
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	6 cut(s)	172, 182, 270, 339, 501, 526
LmnI	GCTCC	3 cut(s)	84, 145, 385
Lsp1109I	GCAGC	4 cut(s)	220, 358, 379, 382
LweI	GCATC	2 cut(s)	48, 282
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	2 cut(s)	131, 305
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	6 cut(s)	174, 184, 272, 341, 503, 528
MboI	GATC	6 cut(s)	172, 182, 270, 339, 501, 526
MboII	GAAGA	5 cut(s)	71, 147, 159, 404, 473
MluCI	AATT	2 cut(s)	31, 150
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	8 cut(s)	55, 75, 352, 370, 420, 492, 518, 521
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	1 cut(s)	18
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	216, 332
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	3 cut(s)	84, 332, 401
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	6 cut(s)	172, 182, 270, 339, 501, 526
NlaIII	CATG	2 cut(s)	71, 488
NlaIV	GGNNCC	1 cut(s)	482
NmuCI	GTSAC	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	164, 256
PkrI	GCNGC	6 cut(s)	106, 210, 328, 348, 394, 397
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	13
Psp5II	RGGWCCY	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	482
PspPI	GGNCC	2 cut(s)	13, 481
PspPPI	RGGWCCY	1 cut(s)	13
PstI	CTGCAG	1 cut(s)	400
PstNI	CAGNNNCTG	1 cut(s)	42
SalI	GTCGAC	2 cut(s)	71, 307
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	6 cut(s)	105, 209, 327, 347, 393, 396
Sau3AI	GATC	6 cut(s)	172, 182, 270, 339, 501, 526
Sau96I	GGNCC	2 cut(s)	13, 481
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	216, 332
SfaNI	GCATC	2 cut(s)	48, 282
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	2 cut(s)	13, 481
Sse9I	AATT	2 cut(s)	31, 150
SsiI	CCGC	5 cut(s)	78, 104, 324, 327, 453
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	214, 330
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	5 cut(s)	283, 313, 473, 494, 536
TaiI	ACGT	2 cut(s)	134, 308
TaqI	TCGA	2 cut(s)	72, 308
TasI	AATT	2 cut(s)	31, 150
TauI	GCSGC	2 cut(s)	107, 329
TfiI	GAWTC	2 cut(s)	164, 256
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	4 cut(s)	208, 346, 392, 395
Tsp45I	GTSAC	1 cut(s)	473
VpaK11BI	GGWCC	2 cut(s)	13, 481
XmiI	GTMKAC	3 cut(s)	72, 195, 308
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	1 cut(s)	114
ZraI	GACGTC	2 cut(s)	132, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.