Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003693

Physical Location & Seq

Genomic Coordinates Forward (+)

43747888 .. 43756466

Gene Structure 8579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG332600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTGAGTGATGAGATCAGAGAATGTTGTACCAATGCCCTACACAGGCTTCACAAGCAATATGGTTGGAAGGGGAAATTTATTCCTCGTTCTTTCAAGTACGTGTTGCGGGATGATCTTTCTAGAGAGGAGTTGTTTCGCCGCATCATTGAATTGGAGAGTAAATTTATAGTCTCTGAACACACTCCTGCCTTATTTACAAAAAGCTTCAGGACTAAAGATCTCGTTAAAGAGTCAGAGAAATCTATGGGAGGTGGAATGGACATAGCGAAAGTGAAGGCTTCGGCACTGCAAGGGAGGAAAACCAAAAAACAGAAAGTGTCTCCACCATTGCTGAAACGGCTCAAGCCGATTCTGAAACTATTGGAGCCAACTCCCGAGGTGACAAAGAGCCCCAAAGGGTTCTCTCCACCCCCCAGCTTGATCCCCTACATAAGTCAGCCAGCCATCCACCGCAAGGGAGGAAAACCAAAAAACAGAAAGTGTCTCCATCGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0006066 GO:0006576 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0016811 GO:0031090 GO:0034308 GO:0034641 GO:0042439 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0047412 GO:0050896 GO:0051704 GO:0051707 GO:0070291 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amidase FPP

Protein Analysis

166

Amino Acids

19.03

Weight (kDa)

10.17

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05721
rosa_chinensis	RchiOBHm_Chr1g0343511
rosa_laevigata	RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661
rosa_multiflora	Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004
rosa_roxburghii	Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460
rosa_samantha	Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	109, 142, 454
AclWI	GGATC	1 cut(s)	418
AcsI	RAATTY	2 cut(s)	77, 164
AcuI	CTGAAG	1 cut(s)	193
AfaI	GTAC	2 cut(s)	31, 101
AfiI	CCNNNNNNNGG	2 cut(s)	45, 457
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	97, 152
AluBI	AGCT	2 cut(s)	207, 420
AluI	AGCT	2 cut(s)	207, 420
Alw26I	GTCTC	3 cut(s)	178, 327, 491
AlwI	GGATC	1 cut(s)	418
Ama87I	CYCGRG	1 cut(s)	377
ApoI	RAATTY	2 cut(s)	77, 164
AsuHPI	GGTGA	2 cut(s)	16, 394
AvaI	CYCGRG	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	395
BccI	CCATC	2 cut(s)	455, 498
BceAI	ACGGC	1 cut(s)	356
BcoDI	GTCTC	3 cut(s)	178, 327, 491
BfaI	CTAG	1 cut(s)	123
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
BmeT110I	CYCGRG	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	369
BmsI	GCATC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 457
Bse3DI	GCAATG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	2 cut(s)	118, 447
BseLI	CCNNNNNNNGG	2 cut(s)	45, 457
BseMI	GCAATG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	143
BseYI	CCCAGC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	45, 457
BsmAI	GTCTC	3 cut(s)	178, 327, 491
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	15, 115, 220, 423
BspACI	CCGC	3 cut(s)	109, 142, 454
BspLI	GGNNCC	1 cut(s)	369
BspPI	GGATC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	4 cut(s)	15, 115, 220, 423
BstBAI	YACGTR	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	444
BstF5I	GGATG	2 cut(s)	118, 447
BstKTI	GATC	4 cut(s)	18, 118, 223, 426
BstMAI	GTCTC	3 cut(s)	178, 327, 491
BstMBI	GATC	4 cut(s)	15, 115, 220, 423
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 340
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	118, 447
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	30, 100
CviQI	GTAC	2 cut(s)	30, 100
DpnI	GATC	4 cut(s)	17, 117, 222, 425
DpnII	GATC	4 cut(s)	15, 115, 220, 423
Eco24I	GRGCYC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	395
FaiI	YATR	5 cut(s)	63, 170, 248, 266, 434
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	2 cut(s)	125, 434
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	1 cut(s)	142
GsaI	CCCAGC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	2 cut(s)	233, 352
HphI	GGTGA	2 cut(s)	16, 394
Hpy188I	TCNGA	4 cut(s)	20, 178, 238, 357
Hpy188III	TCNNGA	3 cut(s)	123, 211, 377
HpyAV	CCTTC	2 cut(s)	64, 271
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 340
HpySE526I	ACGT	1 cut(s)	102
Kzo9I	GATC	4 cut(s)	15, 115, 220, 423
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	5 cut(s)	31, 196, 201, 430, 456
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	4 cut(s)	17, 117, 222, 425
MboI	GATC	4 cut(s)	15, 115, 220, 423
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	3 cut(s)	77, 152, 164
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	6 cut(s)	96, 121, 245, 291, 373, 455
MseI	TTAA	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	55, 340
NdeII	GATC	4 cut(s)	15, 115, 220, 423
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Ppu21I	YACGTR	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	31, 101
RsaNI	GTAC	2 cut(s)	30, 100
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	4 cut(s)	15, 115, 220, 423
SchI	GAGTC	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	395
SetI	ASST	5 cut(s)	105, 209, 256, 384, 422
SfaNI	GCATC	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	3 cut(s)	77, 152, 164
SsiI	CCGC	3 cut(s)	109, 142, 454
SspMI	CTAG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	105
TasI	AATT	3 cut(s)	77, 152, 164
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
TspRI	CASTG	1 cut(s)	294
XapI	RAATTY	2 cut(s)	77, 164
XbaI	TCTAGA	1 cut(s)	122
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.