Rh3AG327300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003693
Physical Location & Seq
Forward (+)
46481812 .. 46482261
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG327300.1

Sequence Viewer

Length: 369 bp
ATGGATATCAAGCGTGCTAAGTTGCCCGCACCACAAGGAAGGAAATCCACCAAGAAGTTGAAACTGACTGAGGGCAGTACCGGAAGTGCCCGCAGCGGATTTAAGAATGTTTGCGGCGAGGTTGAATCCAGTCACGGCCACAAGGAAGCTTCGGAATCACTCTCCCTGCCTCGAACCATTCTCCTGAATTCACCATGCAACCTCCTTTACAGCTCACCTTCCCAAAGGGTGATGACTCTTACGTGCTGGAGGGTGTCCCAATTGCCTTCTACAAAGAAGGCATGTTTGGCGGTGGTGCAAGCTTTGGCTCTGAACGACGTTGACCGGGATAAGCTAATGGATTTGAGTATGAAAGATATCTCGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.26

Weight (kDa)

9.61

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 27, 91, 96, 114, 290
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 1 cut(s) 187
AfaI GTAC 1 cut(s) 79
AgsI TTSAA 2 cut(s) 61, 125
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 4 cut(s) 149, 213, 302, 334
AluI AGCT 4 cut(s) 149, 213, 302, 334
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 3 cut(s) 183, 207, 241
BaeGI GKGCMC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 151
BcnI CCSGG 1 cut(s) 326
BisI GCNGC 2 cut(s) 94, 115
BlsI GCNGC 2 cut(s) 95, 116
Bme1390I CCNGG 1 cut(s) 326
BmrFI CCNGG 1 cut(s) 326
BpmI CTGGAG 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 326
BsaAI YACGTR 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 1 cut(s) 105
BshFI GGCC 1 cut(s) 138
BsiSI CCGG 2 cut(s) 81, 325
BslFI GGGAC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 241
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 91
BspACI CCGC 5 cut(s) 27, 91, 96, 114, 290
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 61
BsrI ACTGG 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 243
BstC8I GCNNGC 4 cut(s) 15, 27, 91, 300
BstDEI CTNAG 2 cut(s) 18, 69
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 138
Cac8I GCNNGC 4 cut(s) 15, 27, 91, 300
Csp6I GTAC 1 cut(s) 78
CviAII CATG 2 cut(s) 195, 282
CviJI RGCY 6 cut(s) 138, 149, 213, 302, 308, 334
CviKI_1 RGCY 6 cut(s) 138, 149, 213, 302, 308, 334
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 2 cut(s) 18, 69
EaeI YGGCCR 1 cut(s) 136
Eco32I GATATC 2 cut(s) 7, 358
EcoRI GAATTC 1 cut(s) 187
EcoRV GATATC 2 cut(s) 7, 358
FaeI CATG 2 cut(s) 198, 285
FaiI YATR 3 cut(s) 196, 283, 350
FaqI GGGAC 1 cut(s) 241
FatI CATG 2 cut(s) 194, 281
FauI CCCGC 2 cut(s) 34, 98
Fnu4HI GCNGC 2 cut(s) 94, 115
Fsp4HI GCNGC 2 cut(s) 94, 115
GluI GCNGC 2 cut(s) 94, 115
GsuI CTGGAG 1 cut(s) 268
HaeIII GGCC 1 cut(s) 138
HapII CCGG 2 cut(s) 81, 325
Hin1II CATG 2 cut(s) 198, 285
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 2 cut(s) 147, 300
HinfI GANTC 3 cut(s) 125, 155, 235
HpaII CCGG 2 cut(s) 81, 325
HphI GGTGA 3 cut(s) 183, 207, 241
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 2 cut(s) 154, 312
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 4 cut(s) 33, 228, 271, 276
HpyCH4IV ACGT 2 cut(s) 242, 318
HpyCH4V TGCA 2 cut(s) 198, 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 18, 69
HpySE526I ACGT 2 cut(s) 242, 318
Hsp92II CATG 2 cut(s) 198, 285
LpnPI CCDG 6 cut(s) 94, 142, 179, 197, 232, 338
Lsp1109I GCAGC 1 cut(s) 105
MaeII ACGT 2 cut(s) 242, 318
MaeIII GTNAC 1 cut(s) 131
MfeI CAATTG 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 2 cut(s) 187, 260
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 5 cut(s) 64, 112, 180, 212, 243
MseI TTAA 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 2 cut(s) 81, 325
MspR9I CCNGG 1 cut(s) 326
MunI CAATTG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 287
NciI CCSGG 1 cut(s) 326
NlaIII CATG 2 cut(s) 198, 285
NmeAIII GCCGAG 1 cut(s) 341
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 1 cut(s) 285
PfeI GAWTC 2 cut(s) 125, 155
PkrI GCNGC 2 cut(s) 95, 116
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Ppu21I YACGTR 1 cut(s) 243
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 2 cut(s) 94, 115
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 1 cut(s) 91
SetI ASST 9 cut(s) 123, 151, 204, 215, 220, 245, 304, 321, 336
Sse9I AATT 2 cut(s) 187, 260
SsiI CCGC 5 cut(s) 27, 91, 96, 114, 290
StyD4I CCNGG 1 cut(s) 324
TaiI ACGT 2 cut(s) 245, 321
TaqI TCGA 1 cut(s) 172
TasI AATT 2 cut(s) 187, 260
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 2 cut(s) 125, 155
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 93
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 365
XapI RAATTY 1 cut(s) 187
XceI RCATGY 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.