Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003693

Physical Location & Seq

Genomic Coordinates Forward (+)

22543557 .. 22557785

Gene Structure 14229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGTGCACCCGAGTACATTCGAGAGATTGGGAATTATGATAACCAATGATACGGGTGATCTACGTTTGCGGGGGGAGTTTCAAATAACAAATGGTTATGGCAAATTGGCTCCTAAAGTCATGAAGGAGCACTGGAGGACATTCATGGTTGAAGAAGACTTTCACTTCATATCAAAAAAATGGATGGCAGAATGCTTGACCGTGTGGACCACCACCACGGTTCCGCCACCGGAATGCGAAGCAGCTCAAAATGATCTTGGAGATAGTTCTCGAGATGCCCGAATGGACGTCGGCTCTTCTCGTCCTCGCTGTAGAAGCCTTAGCTCGGAGCGATGTGAGAACTCTAGTATGTTACATTTGCTCACCGCGCAAGAAGAGCTGCGTTCTCTTAAAGGGCTTTATGAACAAGCCCGGCCGAGATCCAACAGCTTAAAGCCGAGGTCGCGACAACGAAAGAGGGGTACGAGCGGGTTGTTGAGGAAGCTAGGTGCCTTCAACAAAGAGAGAGATCTACAGATGGTATTCCGGCAGCCGCTTTGGAAGAGGGTACCGTCGCGGCATTCATGCTTACCTGGCTGCTATCAAAAACTAAACCAAGCATCCAAAGATCCAAAGAGAATTCATACATGCATACAACTTCGCCGGGTCTATCATCATTGGTGGCGACTTGGTGAATACACCCTCGTCTTGGTGCGCAAGCCGATTGCTGCCGGAGAAATTAGTGGGGGCTTCTTGTTTCGGGAATTGGGTGACGATCCTTGGAGTTGGGTTTTGAGCTTGGTGTTCTTAGCTTCGAAAGGGGATGGGTGGGGGTACCGCAAAAGGTACTACGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005575 GO:0005576 GO:0005623 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0015926 GO:0016052 GO:0016787 GO:0016798 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044464 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulase

Protein Analysis

279

Amino Acids

32.41

Weight (kDa)

9.81

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05721
rosa_chinensis	RchiOBHm_Chr1g0343511
rosa_laevigata	RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661
rosa_multiflora	Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004
rosa_roxburghii	Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460
rosa_samantha	Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
Acc16I	TGCGCA	1 cut(s)	695
Acc65I	GGTACC	2 cut(s)	547, 813
AccB1I	GGYRCC	3 cut(s)	488, 547, 813
AccBSI	CCGCTC	1 cut(s)	468
AccII	CGCG	3 cut(s)	368, 445, 556
AciI	CCGC	7 cut(s)	70, 224, 366, 468, 533, 556, 817
AclWI	GGATC	3 cut(s)	414, 602, 749
AcoI	YGGCCR	1 cut(s)	413
AcsI	RAATTY	1 cut(s)	618
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	5 cut(s)	16, 463, 549, 815, 827
AfiI	CCNNNNNNNGG	2 cut(s)	325, 688
AgsI	TTSAA	3 cut(s)	83, 152, 496
AjnI	CCWGG	1 cut(s)	571
AluBI	AGCT	7 cut(s)	245, 324, 379, 429, 484, 777, 791
AluI	AGCT	7 cut(s)	245, 324, 379, 429, 484, 777, 791
Alw21I	GWGCWC	2 cut(s)	9, 132
Alw44I	GTGCAC	1 cut(s)	5
AlwI	GGATC	3 cut(s)	414, 602, 749
Ama87I	CYCGRG	2 cut(s)	10, 270
AoxI	GGCC	1 cut(s)	413
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	5 cut(s)	242, 379, 529, 576, 707
ApoI	RAATTY	1 cut(s)	618
Asp700I	GAANNNNTTC	1 cut(s)	159
Asp718I	GGTACC	2 cut(s)	547, 813
AspLEI	GCGC	2 cut(s)	370, 696
AspS9I	GGNCC	1 cut(s)	207
AsuC2I	CCSGG	2 cut(s)	412, 644
AsuHPI	GGTGA	4 cut(s)	68, 355, 683, 761
AsuII	TTCGAA	1 cut(s)	794
AvaI	CYCGRG	2 cut(s)	10, 270
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	3 cut(s)	488, 547, 813
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	2 cut(s)	9, 132
BbvI	GCAGC	5 cut(s)	254, 366, 541, 563, 694
BccI	CCATC	3 cut(s)	178, 511, 797
BciT130I	CCWGG	1 cut(s)	573
BcnI	CCSGG	2 cut(s)	412, 644
BfaI	CTAG	2 cut(s)	345, 485
BfmI	CTRYAG	2 cut(s)	310, 512
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	7 cut(s)	243, 380, 530, 533, 557, 577, 708
BlsI	GCNGC	7 cut(s)	244, 381, 531, 534, 558, 578, 709
Bme1390I	CCNGG	3 cut(s)	412, 573, 644
Bme18I	GGWCC	1 cut(s)	207
BmeT110I	CYCGRG	2 cut(s)	10, 270
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	5 cut(s)	111, 222, 490, 549, 815
BmrFI	CCNGG	3 cut(s)	412, 573, 644
BmsI	GCATC	3 cut(s)	265, 608, 823
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	794
BpuMI	CCSGG	2 cut(s)	412, 644
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	216, 437, 758
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 688
Bse1I	ACTGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	3 cut(s)	216, 437, 758
BseGI	GGATG	3 cut(s)	189, 599, 808
BseLI	CCNNNNNNNGG	2 cut(s)	325, 688
BseNI	ACTGG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	9
BseX3I	CGGCCG	1 cut(s)	413
BseXI	GCAGC	5 cut(s)	254, 366, 541, 563, 694
Bsh1236I	CGCG	3 cut(s)	368, 445, 556
Bsh1285I	CGRYCG	1 cut(s)	416
BshFI	GGCC	1 cut(s)	415
BshNI	GGYRCC	3 cut(s)	488, 547, 813
BsiEI	CGRYCG	1 cut(s)	416
BsiHKAI	GWGCWC	2 cut(s)	9, 132
BsiHKCI	CYCGRG	2 cut(s)	10, 270
BsiSI	CCGG	5 cut(s)	230, 412, 526, 643, 711
BslI	CCNNNNNNNGG	2 cut(s)	325, 688
BsmI	GAATGC	3 cut(s)	197, 239, 559
BsnI	GGCC	1 cut(s)	415
BsoBI	CYCGRG	2 cut(s)	10, 270
Bsp119I	TTCGAA	1 cut(s)	794
Bsp1286I	GDGCHC	2 cut(s)	9, 132
Bsp143I	GATC	6 cut(s)	58, 253, 419, 508, 607, 754
Bsp68I	TCGCGA	1 cut(s)	445
BspACI	CCGC	7 cut(s)	70, 224, 366, 468, 533, 556, 817
BspANI	GGCC	1 cut(s)	415
BspFNI	CGCG	3 cut(s)	368, 445, 556
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	5 cut(s)	111, 222, 490, 549, 815
BspPI	GGATC	3 cut(s)	414, 602, 749
BspQI	GCTCTTC	2 cut(s)	301, 369
BspT104I	TTCGAA	1 cut(s)	794
BspT107I	GGYRCC	3 cut(s)	488, 547, 813
BsrBI	CCGCTC	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	3 cut(s)	216, 437, 758
BssMI	GATC	6 cut(s)	58, 253, 419, 508, 607, 754
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	758
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	3 cut(s)	202, 220, 552
Bst6I	CTCTTC	3 cut(s)	301, 369, 536
BstACI	GRCGYC	1 cut(s)	288
BstBI	TTCGAA	1 cut(s)	794
BstC8I	GCNNGC	1 cut(s)	698
BstDEI	CTNAG	2 cut(s)	320, 787
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	3 cut(s)	189, 599, 808
BstFNI	CGCG	3 cut(s)	368, 445, 556
BstHHI	GCGC	2 cut(s)	370, 696
BstKTI	GATC	6 cut(s)	61, 256, 422, 511, 610, 757
BstMBI	GATC	6 cut(s)	58, 253, 419, 508, 607, 754
BstMCI	CGRYCG	1 cut(s)	416
BstMWI	GCNNNNNNNGC	5 cut(s)	315, 367, 376, 442, 573
BstNI	CCWGG	1 cut(s)	573
BstNSI	RCATGY	1 cut(s)	630
BstSCI	CCNGG	3 cut(s)	410, 571, 642
BstSFI	CTRYAG	2 cut(s)	310, 512
BstSLI	GKGCMC	1 cut(s)	9
BstUI	CGCG	3 cut(s)	368, 445, 556
BstV1I	GCAGC	5 cut(s)	254, 366, 541, 563, 694
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	3 cut(s)	419, 508, 607
BstYI	RGATCY	3 cut(s)	419, 508, 607
BstZI	CGGCCG	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	415
BtgI	CCRYGG	1 cut(s)	216
BtgZI	GCGATG	1 cut(s)	346
BtsCI	GGATG	3 cut(s)	189, 599, 808
BtsIMutI	CAGTG	1 cut(s)	130
BtuMI	TCGCGA	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	698
CciI	TCATGA	1 cut(s)	120
CfoI	GCGC	2 cut(s)	370, 696
Cfr13I	GGNCC	1 cut(s)	207
Csp6I	GTAC	5 cut(s)	15, 462, 548, 814, 826
CviAII	CATG	4 cut(s)	121, 145, 564, 627
CviQI	GTAC	5 cut(s)	15, 462, 548, 814, 826
DdeI	CTNAG	2 cut(s)	320, 787
DpnI	GATC	6 cut(s)	60, 255, 421, 510, 609, 756
DpnII	GATC	6 cut(s)	58, 253, 419, 508, 607, 754
EaeI	YGGCCR	1 cut(s)	413
EagI	CGGCCG	1 cut(s)	413
Eam1104I	CTCTTC	3 cut(s)	301, 369, 536
EarI	CTCTTC	3 cut(s)	301, 369, 536
EciI	GGCGGA	1 cut(s)	213
EclXI	CGGCCG	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	758
Eco47I	GGWCC	1 cut(s)	207
Eco52I	CGGCCG	1 cut(s)	413
Eco88I	CYCGRG	2 cut(s)	10, 270
EcoRI	GAATTC	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	758
EcoT22I	ATGCAT	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	758
FaeI	CATG	4 cut(s)	124, 148, 567, 630
FatI	CATG	4 cut(s)	120, 144, 563, 626
FauI	CCCGC	2 cut(s)	63, 461
Fnu4HI	GCNGC	7 cut(s)	243, 380, 530, 533, 557, 577, 708
FokI	GGATG	3 cut(s)	196, 586, 815
Fsp4HI	GCNGC	7 cut(s)	243, 380, 530, 533, 557, 577, 708
FspBI	CTAG	2 cut(s)	345, 485
FspI	TGCGCA	1 cut(s)	695
GlaI	GCGC	2 cut(s)	369, 695
GluI	GCNGC	7 cut(s)	243, 380, 530, 533, 557, 577, 708
GsuI	CTGGAG	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	415
HapII	CCGG	5 cut(s)	230, 412, 526, 643, 711
HhaI	GCGC	2 cut(s)	370, 696
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	4 cut(s)	124, 148, 567, 630
Hin6I	GCGC	2 cut(s)	368, 694
HinP1I	GCGC	2 cut(s)	368, 694
HpaII	CCGG	5 cut(s)	230, 412, 526, 643, 711
HphI	GGTGA	4 cut(s)	68, 355, 683, 761
Hpy166II	GTNNAC	2 cut(s)	7, 207
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	6 cut(s)	22, 121, 270, 272, 444, 740
Hpy8I	GTNNAC	2 cut(s)	7, 207
Hpy99I	CGWCG	2 cut(s)	293, 556
HpyAV	CCTTC	2 cut(s)	118, 502
HpyCH4III	ACNGT	3 cut(s)	202, 220, 552
HpyCH4IV	ACGT	2 cut(s)	64, 288
HpyCH4V	TGCA	2 cut(s)	7, 630
HpyF10VI	GCNNNNNNNGC	5 cut(s)	315, 367, 376, 442, 573
HpyF3I	CTNAG	2 cut(s)	320, 787
HpySE526I	ACGT	2 cut(s)	64, 288
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	4 cut(s)	124, 148, 567, 630
HspAI	GCGC	2 cut(s)	368, 694
KpnI	GGTACC	2 cut(s)	551, 817
Kzo9I	GATC	6 cut(s)	58, 253, 419, 508, 607, 754
LguI	GCTCTTC	2 cut(s)	301, 369
LmnI	GCTCC	3 cut(s)	115, 127, 328
LpnPI	CCDG	8 cut(s)	118, 243, 425, 539, 558, 585, 656, 724
Lsp1109I	GCAGC	5 cut(s)	254, 366, 541, 563, 694
LweI	GCATC	3 cut(s)	265, 608, 823
MaeI	CTAG	2 cut(s)	345, 485
MaeII	ACGT	2 cut(s)	64, 288
MaeIII	GTNAC	2 cut(s)	351, 749
MalI	GATC	6 cut(s)	60, 255, 421, 510, 609, 756
MbiI	CCGCTC	1 cut(s)	468
MboI	GATC	6 cut(s)	58, 253, 419, 508, 607, 754
MboII	GAAGA	5 cut(s)	164, 167, 288, 386, 553
MflI	RGATCY	3 cut(s)	419, 508, 607
MhlI	GDGCHC	2 cut(s)	9, 132
MluCI	AATT	5 cut(s)	33, 104, 618, 717, 743
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	7 cut(s)	129, 315, 432, 450, 471, 537, 692
Mph1103I	ATGCAT	1 cut(s)	632
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	3 cut(s)	390, 431, 838
MslI	CAYNNNNRTG	1 cut(s)	232
MspI	CCGG	5 cut(s)	230, 412, 526, 643, 711
MspR9I	CCNGG	3 cut(s)	412, 573, 644
Mva1269I	GAATGC	3 cut(s)	197, 239, 559
MvaI	CCWGG	1 cut(s)	573
MvnI	CGCG	3 cut(s)	368, 445, 556
MwoI	GCNNNNNNNGC	5 cut(s)	315, 367, 376, 442, 573
NciI	CCSGG	2 cut(s)	412, 644
NdeII	GATC	6 cut(s)	58, 253, 419, 508, 607, 754
NlaIII	CATG	4 cut(s)	124, 148, 567, 630
NlaIV	GGNNCC	5 cut(s)	111, 222, 490, 549, 815
NmeAIII	GCCGAG	2 cut(s)	441, 462
NmuCI	GTSAC	1 cut(s)	749
NruI	TCGCGA	1 cut(s)	445
NsbI	TGCGCA	1 cut(s)	695
NsiI	ATGCAT	1 cut(s)	632
NspI	RCATGY	1 cut(s)	630
NspV	TTCGAA	1 cut(s)	794
PaeR7I	CTCGAG	1 cut(s)	270
PagI	TCATGA	1 cut(s)	120
PciSI	GCTCTTC	2 cut(s)	301, 369
PcsI	WCGNNNNNNNCGW	1 cut(s)	277
PctI	GAATGC	3 cut(s)	197, 239, 559
PdmI	GAANNNNTTC	1 cut(s)	159
PkrI	GCNGC	7 cut(s)	244, 381, 531, 534, 558, 578, 709
Psp6I	CCWGG	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	5 cut(s)	111, 222, 490, 549, 815
PspPI	GGNCC	1 cut(s)	207
PsuI	RGATCY	3 cut(s)	419, 508, 607
RruI	TCGCGA	1 cut(s)	445
RsaI	GTAC	5 cut(s)	16, 463, 549, 815, 827
RsaNI	GTAC	5 cut(s)	15, 462, 548, 814, 826
RseI	CAYNNNNRTG	1 cut(s)	232
SapI	GCTCTTC	2 cut(s)	301, 369
SaqAI	TTAA	3 cut(s)	390, 431, 838
SatI	GCNGC	7 cut(s)	243, 380, 530, 533, 557, 577, 708
Sau3AI	GATC	6 cut(s)	58, 253, 419, 508, 607, 754
Sau96I	GGNCC	1 cut(s)	207
ScrFI	CCNGG	3 cut(s)	412, 573, 644
SduI	GDGCHC	2 cut(s)	9, 132
SfaNI	GCATC	3 cut(s)	265, 608, 823
SfcI	CTRYAG	2 cut(s)	310, 512
Sfr274I	CTCGAG	1 cut(s)	270
SfuI	TTCGAA	1 cut(s)	794
SinI	GGWCC	1 cut(s)	207
SlaI	CTCGAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	5 cut(s)	33, 104, 618, 717, 743
SsiI	CCGC	7 cut(s)	70, 224, 366, 468, 533, 556, 817
SspMI	CTAG	2 cut(s)	345, 485
StyD4I	CCNGG	3 cut(s)	410, 571, 642
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	3 cut(s)	202, 220, 552
TaiI	ACGT	2 cut(s)	67, 291
TaqI	TCGA	3 cut(s)	21, 271, 794
TasI	AATT	5 cut(s)	33, 104, 618, 717, 743
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	2 cut(s)	535, 559
Tru1I	TTAA	3 cut(s)	390, 431, 838
Tru9I	TTAA	3 cut(s)	390, 431, 838
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	1 cut(s)	749
TseI	GCWGC	5 cut(s)	242, 379, 529, 576, 707
Tsp45I	GTSAC	1 cut(s)	749
TspDTI	ATGAA	6 cut(s)	133, 137, 157, 417, 552, 611
TspRI	CASTG	1 cut(s)	137
VneI	GTGCAC	1 cut(s)	5
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	1 cut(s)	618
XceI	RCATGY	1 cut(s)	630
XhoI	CTCGAG	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	2 cut(s)	345, 485
ZraI	GACGTC	1 cut(s)	289
Zsp2I	ATGCAT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.