Rroxscaffold_2G00113360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003693
Physical Location & Seq
Forward (+)
38906734 .. 38907913
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113360.1

Sequence Viewer

Length: 591 bp
ATGGCTTTTACAATGATCAGCTATGGCTTTTATTGTCAAGCATCGAACCAGAATTATTTCGTGAGCATGAAAGGAGAAGACATAGAAAGGTCGTTTCATCGACTAGCCGCTTTTTTTGTGCTAAGTCTCTCGCACCGCAAGGGAGACAAACTAAAACAAAAATTACCTAATGTCGGCACCGAAACCGCTCGAGCCGACTCGAATCTACACGCCGTAACAAAGTACCACGGGGTAGTCTCCGCCGCCTCGAGTCGATCCCCGCATTCTCCATGCAGGGCAAACAGCGGTCCCCTAACAGTTTCGGGCACCAACCTTGACGCTCATCAAATCGGTTCACCGTTATCCTCGAAGCCTCATTTGCAACTAACTTTTCCTAAAAAAGATGACTCGTACGTGTTGGAGGGGGACCAAATTGCCTTCGACAAAGAGGCGTTCTTGGCCGTGGCCCAAGCTCTAGCCTTGAATCCCGTTGAACACGATAAGCTTTCTCATATGAGTTTAAGGGACCTCGCTGCGCAACTTCCCATATCCTTGCAGTTGGCCTCCTCAATGATGCAGCACATTGTGATGAGGACGACGTCGCCGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.49

Weight (kDa)

8.89

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 581
Acc16I TGCGCA 1 cut(s) 516
AccB1I GGYRCC 2 cut(s) 176, 305
AccBSI CCGCTC 1 cut(s) 188
AciI CCGC 7 cut(s) 108, 136, 186, 240, 243, 260, 285
AclWI GGATC 1 cut(s) 249
AcoI YGGCCR 1 cut(s) 438
AcyI GRCGYC 1 cut(s) 578
AdeI CACNNNGTG 1 cut(s) 565
AfaI GTAC 2 cut(s) 224, 392
AfiI CCNNNNNNNGG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 2 cut(s) 463, 473
AluBI AGCT 3 cut(s) 21, 452, 484
AluI AGCT 3 cut(s) 21, 452, 484
Alw26I GTCTC 3 cut(s) 131, 138, 241
AlwI GGATC 1 cut(s) 249
Ama87I CYCGRG 2 cut(s) 189, 247
AoxI GGCC 3 cut(s) 438, 444, 540
ApeKI GCWGC 2 cut(s) 512, 556
Asp700I GAANNNNTTC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 4 cut(s) 287, 406, 445, 505
AsuHPI GGTGA 1 cut(s) 327
AvaI CYCGRG 2 cut(s) 189, 247
AvaII GGWCC 3 cut(s) 287, 406, 505
BaeGI GKGCMC 1 cut(s) 308
BanI GGYRCC 2 cut(s) 176, 305
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 499, 568
BceAI ACGGC 2 cut(s) 197, 425
BclI TGATCA 1 cut(s) 15
BcoDI GTCTC 3 cut(s) 131, 138, 241
BfaI CTAG 2 cut(s) 104, 455
BisI GCNGC 4 cut(s) 108, 243, 513, 557
BlsI GCNGC 4 cut(s) 109, 244, 514, 558
Bme18I GGWCC 3 cut(s) 287, 406, 505
BmeT110I CYCGRG 2 cut(s) 189, 247
BmgT120I GGNCC 4 cut(s) 287, 406, 445, 505
BmiI GGNNCC 5 cut(s) 178, 289, 307, 407, 506
BmsI GCATC 2 cut(s) 50, 543
BpiI GAAGAC 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 394
BsaHI GRCGYC 1 cut(s) 578
BsaJI CCNNGG 2 cut(s) 226, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 173
BseDI CCNNGG 2 cut(s) 226, 441
BseLI CCNNNNNNNGG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 535
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 2 cut(s) 499, 568
BshFI GGCC 3 cut(s) 440, 446, 542
BshNI GGYRCC 2 cut(s) 176, 305
BsiHKCI CYCGRG 2 cut(s) 189, 247
BsiWI CGTACG 1 cut(s) 390
BslFI GGGAC 3 cut(s) 273, 419, 518
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 3 cut(s) 131, 138, 241
BsmFI GGGAC 3 cut(s) 273, 419, 518
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 3 cut(s) 440, 446, 542
BsoBI CYCGRG 2 cut(s) 189, 247
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 2 cut(s) 15, 254
BspACI CCGC 7 cut(s) 108, 136, 186, 240, 243, 260, 285
BspANI GGCC 3 cut(s) 440, 446, 542
BspLI GGNNCC 5 cut(s) 178, 289, 307, 407, 506
BspPI GGATC 1 cut(s) 249
BspT107I GGYRCC 2 cut(s) 176, 305
BsrBI CCGCTC 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 226, 441
BssMI GATC 2 cut(s) 15, 254
BssNI GRCGYC 1 cut(s) 578
Bst4CI ACNGT 2 cut(s) 298, 339
BstACI GRCGYC 1 cut(s) 578
BstBAI YACGTR 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 122
BstDSI CCRYGG 2 cut(s) 226, 441
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 2 cut(s) 18, 257
BstMAI GTCTC 3 cut(s) 131, 138, 241
BstMBI GATC 2 cut(s) 15, 254
BstMWI GCNNNNNNNGC 2 cut(s) 358, 437
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 2 cut(s) 499, 568
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 3 cut(s) 440, 446, 542
BtgI CCRYGG 2 cut(s) 226, 441
CfoI GCGC 1 cut(s) 517
Cfr13I GGNCC 4 cut(s) 287, 406, 445, 505
CseI GACGC 1 cut(s) 326
Csp6I GTAC 2 cut(s) 223, 391
CviAII CATG 2 cut(s) 67, 270
CviQI GTAC 2 cut(s) 223, 391
DdeI CTNAG 1 cut(s) 122
DpnI GATC 2 cut(s) 17, 256
DpnII GATC 2 cut(s) 15, 254
DraIII CACNNNGTG 1 cut(s) 565
EaeI YGGCCR 1 cut(s) 438
EciI GGCGGA 1 cut(s) 229
Eco47I GGWCC 3 cut(s) 287, 406, 505
Eco88I CYCGRG 2 cut(s) 189, 247
EcoO109I RGGNCCY 1 cut(s) 505
FaeI CATG 2 cut(s) 70, 273
FaiI YATR 7 cut(s) 24, 68, 83, 271, 492, 494, 527
FaqI GGGAC 3 cut(s) 273, 419, 518
FatI CATG 2 cut(s) 66, 269
FauI CCCGC 1 cut(s) 267
FauNDI CATATG 1 cut(s) 492
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 4 cut(s) 108, 243, 513, 557
Fsp4HI GCNGC 4 cut(s) 108, 243, 513, 557
FspBI CTAG 2 cut(s) 104, 455
FspI TGCGCA 1 cut(s) 516
GlaI GCGC 1 cut(s) 516
GluI GCNGC 4 cut(s) 108, 243, 513, 557
HaeIII GGCC 3 cut(s) 440, 446, 542
HgaI GACGC 1 cut(s) 326
HhaI GCGC 1 cut(s) 517
Hin1I GRCGYC 1 cut(s) 578
Hin1II CATG 2 cut(s) 70, 273
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 5 cut(s) 197, 202, 250, 386, 463
HphI GGTGA 1 cut(s) 327
Hpy166II GTNNAC 1 cut(s) 335
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 335
Hpy99I CGWCG 2 cut(s) 580, 583
HpyAV CCTTC 1 cut(s) 427
HpyCH4III ACNGT 2 cut(s) 298, 339
HpyCH4IV ACGT 2 cut(s) 393, 578
HpyCH4V TGCA 4 cut(s) 273, 361, 535, 556
HpyF10VI GCNNNNNNNGC 2 cut(s) 358, 437
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 2 cut(s) 393, 578
Hsp92I GRCGYC 1 cut(s) 578
Hsp92II CATG 2 cut(s) 70, 273
HspAI GCGC 1 cut(s) 515
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 2 cut(s) 15, 254
LpnPI CCDG 2 cut(s) 62, 259
Lsp1109I GCAGC 2 cut(s) 499, 568
LweI GCATC 2 cut(s) 50, 543
MaeI CTAG 2 cut(s) 104, 455
MaeII ACGT 2 cut(s) 393, 578
MaeIII GTNAC 1 cut(s) 214
MalI GATC 2 cut(s) 17, 256
MbiI CCGCTC 1 cut(s) 188
MboI GATC 2 cut(s) 15, 254
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 4 cut(s) 52, 161, 411, 586
MlyI GAGTC 3 cut(s) 191, 259, 380
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 9 cut(s) 256, 355, 363, 394, 421, 518, 553, 556, 564
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 1 cut(s) 500
MslI CAYNNNNRTG 1 cut(s) 566
MspA1I CMGCKG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 358, 437
NdeI CATATG 1 cut(s) 492
NdeII GATC 2 cut(s) 15, 254
NlaIII CATG 2 cut(s) 70, 273
NlaIV GGNNCC 5 cut(s) 178, 289, 307, 407, 506
NsbI TGCGCA 1 cut(s) 516
PaeR7I CTCGAG 2 cut(s) 189, 247
PcsI WCGNNNNNNNCGW 1 cut(s) 581
PctI GAATGC 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 2 cut(s) 202, 463
Pfl23II CGTACG 1 cut(s) 390
PflFI GACNNNGTC 1 cut(s) 577
PkrI GCNGC 4 cut(s) 109, 244, 514, 558
PleI GAGTC 3 cut(s) 191, 258, 380
PpsI GAGTC 3 cut(s) 191, 258, 380
Ppu21I YACGTR 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 505
Psp5II RGGWCCY 1 cut(s) 505
PspLI CGTACG 1 cut(s) 390
PspN4I GGNNCC 5 cut(s) 178, 289, 307, 407, 506
PspPI GGNCC 4 cut(s) 287, 406, 445, 505
PspPPI RGGWCCY 1 cut(s) 505
PspXI VCTCGAGB 2 cut(s) 189, 247
PsyI GACNNNGTC 1 cut(s) 577
RsaI GTAC 2 cut(s) 224, 392
RsaNI GTAC 2 cut(s) 223, 391
RseI CAYNNNNRTG 1 cut(s) 566
SaqAI TTAA 1 cut(s) 500
SatI GCNGC 4 cut(s) 108, 243, 513, 557
Sau3AI GATC 2 cut(s) 15, 254
Sau96I GGNCC 4 cut(s) 287, 406, 445, 505
SchI GAGTC 3 cut(s) 191, 259, 380
SduI GDGCHC 1 cut(s) 308
SetI ASST 9 cut(s) 23, 92, 169, 315, 396, 454, 486, 510, 581
SfaNI GCATC 2 cut(s) 50, 543
Sfr274I CTCGAG 2 cut(s) 189, 247
SinI GGWCC 3 cut(s) 287, 406, 505
SlaI CTCGAG 2 cut(s) 189, 247
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 2 cut(s) 189, 247
SmoI CTYRAG 2 cut(s) 189, 247
Sse9I AATT 4 cut(s) 52, 161, 411, 586
SsiI CCGC 7 cut(s) 108, 136, 186, 240, 243, 260, 285
SspMI CTAG 2 cut(s) 104, 455
TaaI ACNGT 2 cut(s) 298, 339
TaiI ACGT 2 cut(s) 396, 581
TaqI TCGA 8 cut(s) 44, 100, 190, 200, 248, 253, 347, 420
TasI AATT 4 cut(s) 52, 161, 411, 586
TauI GCSGC 2 cut(s) 110, 245
TfiI GAWTC 2 cut(s) 202, 463
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TseI GCWGC 2 cut(s) 512, 556
TspDTI ATGAA 2 cut(s) 83, 86
Tth111I GACNNNGTC 1 cut(s) 577
VpaK11BI GGWCC 3 cut(s) 287, 406, 505
XhoI CTCGAG 2 cut(s) 189, 247
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 2 cut(s) 104, 455
ZraI GACGTC 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.