Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006695.1

Orthogroup ID

OG0003693

Physical Location & Seq

Genomic Coordinates Forward (+)

29216 .. 31074

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006695.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atggtttcaacgcaatcaacccaacaactcgtggtcagctttcttctaccgatgcaaggaaaccaagacgaagccaagaagagccggaagagtcgtcgaaactcgccgaagcagtctctgcttctcaccttcgagtctcccccctcgttcggtgcatgggcgatcaaaggccacaggcgtgatggcgacgacgagacgaagatgttggtggccgctcgccgtcgtggggtggccggacggcgtccctctggtcgggtctccttctcgggtcgcggtggcgtctgggttagagctcccactgatctggacatctcgaaatctctggcaggagcgatttattcttgctatcttcaatctttagatcccaacctatcgagagaagaactacttctacaggtcaatgagttggaacgcaaattctttattactgaacatactcctgctttgtttgtagcaagcctcaagatcaaagaggagttggagaaaaaagaaagtgtcaagatggacatcaggagtgttaagttgcctgcaccacaaggaagaaaatccgccaagaacccgaaactgactaagggcagtaccagaaatgcccgcaacggatttgagaagctcaccttcccaaagggtgatgactcttacgtgttggagggtgacccaattgccttcgacaaagaggcatgtttggcggtggtgcaagatttggccctgaacgatgttgaccacgagaagcttttcggtttgagcatgaaagatatctcgacgcagatttccctaggcttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

28.86

Weight (kDa)

9.59

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05721
rosa_chinensis	RchiOBHm_Chr1g0343511
rosa_laevigata	RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661
rosa_multiflora	Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004
rosa_roxburghii	Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460
rosa_samantha	Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	215
AccII	CGCG	1 cut(s)	273
AciI	CCGC	5 cut(s)	213, 273, 549, 592, 686
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	2 cut(s)	210, 231
AcsI	RAATTY	1 cut(s)	416
AcyI	GRCGYC	2 cut(s)	241, 279
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	4 cut(s)	56, 149, 226, 252
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	2 cut(s)	9, 353
AleI	CACNNNNGTG	1 cut(s)	177
AluBI	AGCT	4 cut(s)	39, 293, 610, 730
AluI	AGCT	4 cut(s)	39, 293, 610, 730
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	4 cut(s)	120, 141, 188, 262
AlwI	GGATC	1 cut(s)	356
AlwNI	CAGNNNCTG	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	4 cut(s)	169, 210, 231, 702
ApoI	RAATTY	1 cut(s)	416
Asp700I	GAANNNNTTC	2 cut(s)	387, 731
AspA2I	CCTAGG	1 cut(s)	772
AspS9I	GGNCC	1 cut(s)	703
AsuHPI	GGTGA	4 cut(s)	118, 604, 638, 662
AvaI	CYCGRG	1 cut(s)	265
AvrII	CCTAGG	1 cut(s)	772
BanII	GRGCYC	1 cut(s)	295
BauI	CACGAG	2 cut(s)	29, 722
Bbv12I	GWGCWC	1 cut(s)	295
BccI	CCATC	2 cut(s)	176, 496
BceAI	ACGGC	2 cut(s)	204, 254
BcoDI	GTCTC	4 cut(s)	120, 141, 188, 262
BfaI	CTAG	1 cut(s)	773
BfmI	CTRYAG	1 cut(s)	392
BisI	GCNGC	1 cut(s)	213
BlnI	CCTAGG	1 cut(s)	772
BlsI	GCNGC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	703
BmsI	GCATC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	446
BsaAI	YACGTR	1 cut(s)	640
BsaBI	GATNNNNATC	1 cut(s)	506
BsaHI	GRCGYC	2 cut(s)	241, 279
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	772
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 149, 226, 252
Bse8I	GATNNNNATC	1 cut(s)	506
BseDI	CCNNGG	1 cut(s)	772
BseJI	GATNNNNATC	1 cut(s)	506
BseLI	CCNNNNNNNGG	4 cut(s)	56, 149, 226, 252
BseRI	GAGGAG	1 cut(s)	488
BsgI	GTGCAG	1 cut(s)	513
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	4 cut(s)	171, 212, 233, 704
BsiHKAI	GWGCWC	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	85, 234
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	4 cut(s)	56, 149, 226, 252
BsmAI	GTCTC	4 cut(s)	120, 141, 188, 262
BsmBI	CGTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	4 cut(s)	171, 212, 233, 704
Bso31I	GGTCTC	1 cut(s)	262
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	162, 301, 361, 465
BspACI	CCGC	5 cut(s)	213, 273, 549, 592, 686
BspANI	GGCC	4 cut(s)	171, 212, 233, 704
BspFNI	CGCG	1 cut(s)	273
BspPI	GGATC	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	262
BsrBI	CCGCTC	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	772
BssMI	GATC	4 cut(s)	162, 301, 361, 465
BssNI	GRCGYC	2 cut(s)	241, 279
BssSI	CACGAG	2 cut(s)	29, 722
BssT1I	CCWWGG	1 cut(s)	772
Bst2BI	CACGAG	2 cut(s)	29, 722
Bst6I	CTCTTC	2 cut(s)	74, 83
BstACI	GRCGYC	2 cut(s)	241, 279
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	640
BstC8I	GCNNGC	4 cut(s)	217, 457, 528, 592
BstDEI	CTNAG	1 cut(s)	570
BstEII	GGTNACC	1 cut(s)	650
BstFNI	CGCG	1 cut(s)	273
BstKTI	GATC	4 cut(s)	165, 304, 364, 468
BstMAI	GTCTC	4 cut(s)	120, 141, 188, 262
BstMBI	GATC	4 cut(s)	162, 301, 361, 465
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 683
BstNSI	RCATGY	1 cut(s)	681
BstPI	GGTNACC	1 cut(s)	650
BstSFI	CTRYAG	1 cut(s)	392
BstUI	CGCG	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	4 cut(s)	171, 212, 233, 704
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	4 cut(s)	217, 457, 528, 592
CaiI	CAGNNNCTG	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	703
CseI	GACGC	3 cut(s)	230, 268, 769
Csp6I	GTAC	1 cut(s)	579
CviAII	CATG	3 cut(s)	156, 678, 745
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	4 cut(s)	164, 303, 363, 467
DpnII	GATC	4 cut(s)	162, 301, 361, 465
EaeI	YGGCCR	2 cut(s)	210, 231
Eam1104I	CTCTTC	2 cut(s)	74, 83
EarI	CTCTTC	2 cut(s)	74, 83
EciI	GGCGGA	1 cut(s)	538
Ecl136II	GAGCTC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	772
Eco24I	GRGCYC	1 cut(s)	295
Eco31I	GGTCTC	1 cut(s)	262
Eco32I	GATATC	1 cut(s)	754
Eco53kI	GAGCTC	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	265
Eco91I	GGTNACC	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	293
EcoO65I	GGTNACC	1 cut(s)	650
EcoRV	GATATC	1 cut(s)	754
EcoT14I	CCWWGG	1 cut(s)	772
EcoT38I	GRGCYC	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	772
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	3 cut(s)	159, 681, 748
FaiI	YATR	4 cut(s)	157, 435, 679, 746
FalI	AAGNNNNNCTT	4 cut(s)	372, 404, 599, 631
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	3 cut(s)	155, 677, 744
FauI	CCCGC	1 cut(s)	599
Fnu4HI	GCNGC	1 cut(s)	213
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	773
GluI	GCNGC	1 cut(s)	213
HaeIII	GGCC	4 cut(s)	171, 212, 233, 704
HapII	CCGG	2 cut(s)	85, 234
HgaI	GACGC	3 cut(s)	230, 268, 769
Hin1I	GRCGYC	2 cut(s)	241, 279
Hin1II	CATG	3 cut(s)	159, 681, 748
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	3 cut(s)	91, 134, 632
HpaII	CCGG	2 cut(s)	85, 234
HphI	GGTGA	4 cut(s)	118, 604, 638, 662
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188III	TCNNGA	7 cut(s)	305, 313, 375, 463, 499, 511, 757
Hpy8I	GTNNAC	1 cut(s)	718
Hpy99I	CGWCG	5 cut(s)	99, 191, 194, 225, 763
HpyAV	CCTTC	4 cut(s)	139, 271, 625, 673
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	4 cut(s)	55, 155, 530, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 683
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	1 cut(s)	639
Hsp92I	GRCGYC	2 cut(s)	241, 279
Hsp92II	CATG	3 cut(s)	159, 681, 748
Kzo9I	GATC	4 cut(s)	162, 301, 361, 465
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	2 cut(s)	298, 329
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	773
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	1 cut(s)	650
MalI	GATC	4 cut(s)	164, 303, 363, 467
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	4 cut(s)	162, 301, 361, 465
MboII	GAAGA	7 cut(s)	35, 91, 100, 211, 341, 392, 552
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	2 cut(s)	416, 657
MlyI	GAGTC	3 cut(s)	100, 143, 626
MmeI	TCCRAC	3 cut(s)	387, 459, 624
MnlI	CCTC	6 cut(s)	154, 256, 466, 470, 640, 667
MroXI	GAANNNNTTC	2 cut(s)	387, 731
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	2 cut(s)	85, 234
MunI	CAATTG	1 cut(s)	657
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	118, 683
NdeII	GATC	4 cut(s)	162, 301, 361, 465
NlaIII	CATG	3 cut(s)	159, 681, 748
NmuCI	GTSAC	1 cut(s)	650
NspI	RCATGY	1 cut(s)	681
OliI	CACNNNNGTG	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	74
PdmI	GAANNNNTTC	2 cut(s)	387, 731
PflFI	GACNNNGTC	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	3 cut(s)	99, 142, 626
PpsI	GAGTC	3 cut(s)	99, 142, 626
Ppu21I	YACGTR	1 cut(s)	640
Psp124BI	GAGCTC	1 cut(s)	295
PspEI	GGTNACC	1 cut(s)	650
PspPI	GGNCC	1 cut(s)	703
PsrI	GAACNNNNNNTAC	2 cut(s)	375, 407
PstNI	CAGNNNCTG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	240
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
RseI	CAYNNNNRTG	1 cut(s)	177
SacI	GAGCTC	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	4 cut(s)	162, 301, 361, 465
Sau96I	GGNCC	1 cut(s)	703
SchI	GAGTC	3 cut(s)	100, 143, 626
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	9 cut(s)	41, 131, 295, 372, 399, 612, 617, 642, 732
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	2 cut(s)	416, 657
SsiI	CCGC	5 cut(s)	213, 273, 549, 592, 686
SspMI	CTAG	1 cut(s)	773
SstI	GAGCTC	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	772
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	6 cut(s)	97, 132, 314, 374, 666, 758
TasI	AATT	2 cut(s)	416, 657
TauI	GCSGC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	650
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	1 cut(s)	761
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	1 cut(s)	304
Tth111I	GACNNNGTC	1 cut(s)	240
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	1 cut(s)	681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmaJI	CCTAGG	1 cut(s)	772
XmnI	GAANNNNTTC	2 cut(s)	387, 731
XspI	CTAG	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.