Rroxscaffold_4G00314360

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
38349462 .. 38350500
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314360.1

Sequence Viewer

Length: 201 bp
ATGTCGGTCGGTTTAGCAAGGGCCACAAACGGACCTCTGTTCCTCAAAGGAAATATTCCTTTGGTTCCCCACTTGTGCTTTTGTGCTGTTTTGGGTTGTGCACCATTCATCTTTGTTGTCCACTTCCAGTCCACATTCCACTCCCACTCTCTCTTCCGTCTTCATCCTCTCTCTTCGATTCAGCCTCATTTGCGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.29

Weight (kDa)

9.81

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Alw21I GWGCWC 1 cut(s) 103
Alw44I GTGCAC 1 cut(s) 99
AoxI GGCC 1 cut(s) 21
ApaLI GTGCAC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 21, 32
AvaII GGWCC 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 21, 32
BmiI GGNNCC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 127
BseSI GKGCMC 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 23
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 103
BsnI GGCC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 103
BspANI GGCC 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 127
Bst6I CTCTTC 2 cut(s) 158, 178
BstF5I GGATG 1 cut(s) 163
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 21, 32
CviJI RGCY 2 cut(s) 23, 184
CviKI_1 RGCY 2 cut(s) 23, 184
Eam1104I CTCTTC 2 cut(s) 158, 178
EarI CTCTTC 2 cut(s) 158, 178
Eco47I GGWCC 1 cut(s) 32
FokI GGATG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 23
HinfI GANTC 1 cut(s) 178
Hpy166II GTNNAC 3 cut(s) 101, 121, 132
Hpy8I GTNNAC 3 cut(s) 101, 121, 132
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
LpnPI CCDG 1 cut(s) 140
MboII GAAGA 3 cut(s) 145, 152, 165
MhlI GDGCHC 1 cut(s) 103
MnlI CCTC 4 cut(s) 45, 53, 177, 195
MwoI GCNNNNNNNGC 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 2 cut(s) 21, 32
Sau96I GGNCC 2 cut(s) 21, 32
SduI GDGCHC 1 cut(s) 103
SetI ASST 1 cut(s) 37
SgeI CNNG 3 cut(s) 30, 85, 139
SinI GGWCC 1 cut(s) 32
SspI AATATT 1 cut(s) 55
TaqI TCGA 1 cut(s) 176
TfiI GAWTC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 97, 152
TspGWI ACGGA 2 cut(s) 45, 146
VneI GTGCAC 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.