Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003693

Physical Location & Seq

Genomic Coordinates Forward (+)

3359948 .. 3361476

Gene Structure 1529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCTTCTCGCCGGGTTGTTAGTCATGGGAAAAAAGTGGGAGATATCACTTGGGATCAGCGACTTTCTTTTCTGTCACCGTTTGGCGCATATTGCCGAGACTGACTGGTTTTTCAACTTCTTGCCGCGCTTGCTCAGAAACGTTTTTGAAGAAAGGACGTGTAACTTCTCTGGTTGGAAGAGTGAAGCGCTTATGGTCCAAGGCTATTGGGCAGCATTGAAAATTCCCACTGTTATCCCTAAGGCTTTCTCCAAACACGCTGCAAGCCTCAAGACCAAAGAGGAGTTAAAGAAAAAAGAAAGTGTTGGGATGGACATCAGACGTGTTAATGAGGTTGACTCTAGTCGCGGCGACAAGGAAGCTTCGGGAATTCTCTCCCTGCTTCAAACCAATATCCCGAATTCACCTCGTAAGTCGGCTAGTGACCACTCTGCAATTGAATTCCCTCTCCGACACTCACCTTGTGGCTTGCCCAAATGTTTCGTCGTCAAGCTTGAAGCTCCCTTAAAACTTACCTTCCTAAAGGGTGATGACTCTTACGTGCTAAAGGGTGACCCCATTGCTTTCGACAAAGAAGCATGTTTGGCGGTGGCGCAAGCATTGGCCCTGAATGACGTCGACTGCGAGAAGTTCTCCGGTTTGAGTATGAAAGATATCTCAGCGCAGATTGCTCTAGGCTTGCAGTCGGCCTTTGTGTTCCAAGAACTGAGTGATGATCCTTGGGGTTGGGTTTTGAGCTTGACGCTCGCTGCTTTTGAAAGGAAATGGGTGGGGGTACCTGCAAAAGGCACTCCGATACTTAAGTTAGTAAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

30.18

Weight (kDa)

8.66

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05721
rosa_chinensis	RchiOBHm_Chr1g0343511
rosa_laevigata	RLG00000019160 RLG00000019378 RLG00000019379 RLG00000022496 RLG00000022772 RLG00000022774 RLG00000029386 RLG00000029511 RLG00000029513 RLG00000029661
rosa_multiflora	Rmu_sc0000335.1_g000029 Rmu_sc0003219.1_g000018 Rmu_sc0004118.1_g000007 Rmu_sc0004413.1_g000011 Rmu_sc0006695.1_g000004
rosa_roxburghii	Rroxscaffold_2G00113320 Rroxscaffold_2G00113360 Rroxscaffold_3G00235530 Rroxscaffold_3G00235540 Rroxscaffold_4G00314360 Rroxscaffold_5G00335830 Rroxscaffold_5G00349870 Rroxscaffold_6G00389460
rosa_samantha	Rh2AG346000 Rh2AG346100 Rh2AG346400 Rh2AG346500 Rh2CG332600 Rh3AG327300 Rh3CG360300 Rh3DG363500 Rh7BG352700 Rh7DG378200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	618
Acc36I	ACCTGC	1 cut(s)	787
Acc65I	GGTACC	1 cut(s)	775
AccB1I	GGYRCC	1 cut(s)	775
AccI	GTMKAC	1 cut(s)	618
AccII	CGCG	2 cut(s)	127, 348
AciI	CCGC	3 cut(s)	125, 348, 587
AclI	AACGTT	1 cut(s)	141
AclWI	GGATC	2 cut(s)	62, 710
AcsI	RAATTY	4 cut(s)	222, 369, 400, 440
AcyI	GRCGYC	1 cut(s)	615
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	1 cut(s)	777
AfeI	AGCGCT	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	785
AflII	CTTAAG	1 cut(s)	800
AflIII	ACRYGT	2 cut(s)	158, 322
AgsI	TTSAA	7 cut(s)	115, 149, 220, 386, 440, 497, 758
AjiI	CACGTC	2 cut(s)	159, 323
AluBI	AGCT	5 cut(s)	362, 493, 500, 738, 815
AluI	AGCT	5 cut(s)	362, 493, 500, 738, 815
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	2 cut(s)	62, 710
Aor51HI	AGCGCT	1 cut(s)	189
AoxI	GGCC	2 cut(s)	603, 687
ApeKI	GCWGC	3 cut(s)	212, 260, 749
ApoI	RAATTY	4 cut(s)	222, 369, 400, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	468, 500
Asp718I	GGTACC	1 cut(s)	775
AspLEI	GCGC	5 cut(s)	88, 129, 190, 595, 664
AspS9I	GGNCC	2 cut(s)	196, 604
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	5 cut(s)	68, 396, 450, 539, 563
AvaII	GGWCC	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	240
BaeI	ACNNNNGTAYC	1 cut(s)	788
BanI	GGYRCC	1 cut(s)	775
BbvI	GCAGC	3 cut(s)	224, 247, 736
BccI	CCATC	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	3 cut(s)	342, 420, 674
BfoI	RGCGCY	1 cut(s)	191
BfrI	CTTAAG	1 cut(s)	800
BfuAI	ACCTGC	1 cut(s)	787
BisI	GCNGC	5 cut(s)	125, 213, 261, 349, 750
BlsI	GCNGC	5 cut(s)	126, 214, 262, 350, 751
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	196
BmgBI	CACGTC	2 cut(s)	159, 323
BmgT120I	GGNCC	2 cut(s)	196, 604
BmiI	GGNNCC	1 cut(s)	777
BmrFI	CCNGG	1 cut(s)	13
BoxI	GACNNNNGTC	1 cut(s)	342
BplI	GAGNNNNNCTC	4 cut(s)	323, 355, 617, 649
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	13
BsaAI	YACGTR	1 cut(s)	541
BsaBI	GATNNNNATC	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	615
BsaJI	CCNNGG	2 cut(s)	199, 719
BsaWI	WCCGGW	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	1 cut(s)	785
Bse1I	ACTGG	1 cut(s)	110
Bse21I	CCTNAGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	199, 719
BseGI	GGATG	1 cut(s)	315
BseJI	GATNNNNATC	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	785
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	3 cut(s)	148, 672, 698
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	3 cut(s)	224, 247, 736
Bsh1236I	CGCG	2 cut(s)	127, 348
BshFI	GGCC	2 cut(s)	605, 689
BshNI	GGYRCC	1 cut(s)	775
BsiSI	CCGG	2 cut(s)	12, 636
BslI	CCNNNNNNNGG	1 cut(s)	785
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	605, 689
Bsp143I	GATC	2 cut(s)	54, 715
BspACI	CCGC	3 cut(s)	125, 348, 587
BspANI	GGCC	2 cut(s)	605, 689
BspCNI	CTCAG	3 cut(s)	147, 671, 699
BspFNI	CGCG	2 cut(s)	127, 348
BspLI	GGNNCC	1 cut(s)	777
BspMI	ACCTGC	1 cut(s)	787
BspPI	GGATC	2 cut(s)	62, 710
BspT107I	GGYRCC	1 cut(s)	775
BspTI	CTTAAG	1 cut(s)	800
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	199, 719
BssMI	GATC	2 cut(s)	54, 715
BssNI	GRCGYC	1 cut(s)	615
BssT1I	CCWWGG	2 cut(s)	199, 719
Bst4CI	ACNGT	2 cut(s)	80, 232
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	615
BstAFI	CTTAAG	1 cut(s)	800
BstBAI	YACGTR	1 cut(s)	541
BstC8I	GCNNGC	6 cut(s)	131, 265, 470, 597, 680, 747
BstDEI	CTNAG	4 cut(s)	134, 240, 658, 707
BstEII	GGTNACC	1 cut(s)	551
BstENI	CCTNNNNNAGG	1 cut(s)	783
BstF5I	GGATG	1 cut(s)	315
BstFNI	CGCG	2 cut(s)	127, 348
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	5 cut(s)	88, 129, 190, 595, 664
BstKTI	GATC	2 cut(s)	57, 718
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	54, 715
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 130, 584, 668
BstNSI	RCATGY	1 cut(s)	582
BstPAI	GACNNNNGTC	1 cut(s)	342
BstPI	GGTNACC	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	11
BstUI	CGCG	2 cut(s)	127, 348
BstV1I	GCAGC	3 cut(s)	224, 247, 736
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	605, 689
BtrI	CACGTC	2 cut(s)	159, 323
BtsCI	GGATG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	787
Cac8I	GCNNGC	6 cut(s)	131, 265, 470, 597, 680, 747
CfoI	GCGC	5 cut(s)	88, 129, 190, 595, 664
Cfr13I	GGNCC	2 cut(s)	196, 604
CseI	GACGC	1 cut(s)	751
Csp6I	GTAC	1 cut(s)	776
CviAII	CATG	2 cut(s)	25, 579
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	4 cut(s)	134, 240, 658, 707
DpnI	GATC	2 cut(s)	56, 717
DpnII	GATC	2 cut(s)	54, 715
DraIII	CACNNNGTG	1 cut(s)	464
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	199, 719
Eco32I	GATATC	2 cut(s)	45, 655
Eco47I	GGWCC	1 cut(s)	196
Eco47III	AGCGCT	1 cut(s)	189
Eco81I	CCTNAGG	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	551
EcoNI	CCTNNNNNAGG	1 cut(s)	783
EcoO65I	GGTNACC	1 cut(s)	551
EcoRI	GAATTC	3 cut(s)	369, 400, 440
EcoRV	GATATC	2 cut(s)	45, 655
EcoT14I	CCWWGG	2 cut(s)	199, 719
ErhI	CCWWGG	2 cut(s)	199, 719
FaeI	CATG	2 cut(s)	28, 582
FaiI	YATR	5 cut(s)	26, 90, 194, 580, 647
FatI	CATG	2 cut(s)	24, 578
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	5 cut(s)	125, 213, 261, 349, 750
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	5 cut(s)	125, 213, 261, 349, 750
FspBI	CTAG	3 cut(s)	342, 420, 674
GlaI	GCGC	5 cut(s)	87, 128, 189, 594, 663
GluI	GCNGC	5 cut(s)	125, 213, 261, 349, 750
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	605, 689
HapII	CCGG	2 cut(s)	12, 636
HgaI	GACGC	1 cut(s)	751
HhaI	GCGC	5 cut(s)	88, 129, 190, 595, 664
Hin1I	GRCGYC	1 cut(s)	615
Hin1II	CATG	2 cut(s)	28, 582
Hin6I	GCGC	5 cut(s)	86, 127, 188, 593, 662
HinP1I	GCGC	5 cut(s)	86, 127, 188, 593, 662
HincII	GTYRAC	2 cut(s)	337, 619
HindII	GTYRAC	2 cut(s)	337, 619
HindIII	AAGCTT	2 cut(s)	360, 491
HinfI	GANTC	2 cut(s)	338, 533
HpaII	CCGG	2 cut(s)	12, 636
HphI	GGTGA	5 cut(s)	68, 396, 450, 539, 563
Hpy166II	GTNNAC	2 cut(s)	337, 619
Hpy188I	TCNGA	4 cut(s)	137, 320, 452, 795
Hpy188III	TCNNGA	3 cut(s)	271, 366, 397
Hpy8I	GTNNAC	2 cut(s)	337, 619
Hpy99I	CGWCG	2 cut(s)	488, 620
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	2 cut(s)	80, 232
HpyCH4IV	ACGT	5 cut(s)	141, 158, 322, 540, 615
HpyCH4V	TGCA	4 cut(s)	263, 434, 682, 782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 130, 584, 668
HpyF3I	CTNAG	4 cut(s)	134, 240, 658, 707
HpySE526I	ACGT	5 cut(s)	141, 158, 322, 540, 615
Hsp92I	GRCGYC	1 cut(s)	615
Hsp92II	CATG	2 cut(s)	28, 582
HspAI	GCGC	5 cut(s)	86, 127, 188, 593, 662
KpnI	GGTACC	1 cut(s)	779
Kzo9I	GATC	2 cut(s)	54, 715
LmnI	GCTCC	1 cut(s)	505
LpnPI	CCDG	7 cut(s)	25, 91, 156, 392, 620, 649, 792
Lsp1109I	GCAGC	3 cut(s)	224, 247, 736
MaeI	CTAG	3 cut(s)	342, 420, 674
MaeII	ACGT	5 cut(s)	141, 158, 322, 540, 615
MaeIII	GTNAC	4 cut(s)	74, 161, 422, 551
MalI	GATC	2 cut(s)	56, 717
MboI	GATC	2 cut(s)	54, 715
MboII	GAAGA	2 cut(s)	161, 190
MfeI	CAATTG	1 cut(s)	435
MluCI	AATT	5 cut(s)	222, 369, 400, 435, 440
MlyI	GAGTC	2 cut(s)	332, 527
MmeI	TCCRAC	2 cut(s)	155, 475
MnlI	CCTC	5 cut(s)	274, 278, 325, 417, 456
MseI	TTAA	4 cut(s)	287, 327, 506, 801
MspCI	CTTAAG	1 cut(s)	800
MspI	CCGG	2 cut(s)	12, 636
MspR9I	CCNGG	1 cut(s)	13
MunI	CAATTG	1 cut(s)	435
MvnI	CGCG	2 cut(s)	127, 348
MwoI	GCNNNNNNNGC	4 cut(s)	92, 130, 584, 668
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	2 cut(s)	54, 715
NlaIII	CATG	2 cut(s)	28, 582
NlaIV	GGNNCC	1 cut(s)	777
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	3 cut(s)	74, 422, 551
NspI	RCATGY	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	1 cut(s)	621
PkrI	GCNGC	5 cut(s)	126, 214, 262, 350, 751
PleI	GAGTC	2 cut(s)	332, 527
PpsI	GAGTC	2 cut(s)	332, 527
Ppu21I	YACGTR	1 cut(s)	541
PshAI	GACNNNNGTC	1 cut(s)	342
Psp1406I	AACGTT	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	551
PspN4I	GGNNCC	1 cut(s)	777
PspPI	GGNCC	2 cut(s)	196, 604
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
SalI	GTCGAC	1 cut(s)	617
SaqAI	TTAA	4 cut(s)	287, 327, 506, 801
SatI	GCNGC	5 cut(s)	125, 213, 261, 349, 750
Sau3AI	GATC	2 cut(s)	54, 715
Sau96I	GGNCC	2 cut(s)	196, 604
SchI	GAGTC	2 cut(s)	332, 527
ScrFI	CCNGG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	196
SmlI	CTYRAG	2 cut(s)	269, 800
SmoI	CTYRAG	2 cut(s)	269, 800
Sse9I	AATT	5 cut(s)	222, 369, 400, 435, 440
SsiI	CCGC	3 cut(s)	125, 348, 587
SspMI	CTAG	3 cut(s)	342, 420, 674
StyD4I	CCNGG	1 cut(s)	11
StyI	CCWWGG	2 cut(s)	199, 719
TaaI	ACNGT	2 cut(s)	80, 232
TaiI	ACGT	5 cut(s)	144, 161, 325, 543, 618
TaqI	TCGA	2 cut(s)	567, 618
TasI	AATT	5 cut(s)	222, 369, 400, 435, 440
TauI	GCSGC	2 cut(s)	127, 351
Tru1I	TTAA	4 cut(s)	287, 327, 506, 801
Tru9I	TTAA	4 cut(s)	287, 327, 506, 801
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	3 cut(s)	74, 422, 551
TseI	GCWGC	3 cut(s)	212, 260, 749
Tsp45I	GTSAC	3 cut(s)	74, 422, 551
TspDTI	ATGAA	1 cut(s)	662
TspRI	CASTG	1 cut(s)	235
Vha464I	CTTAAG	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	196
XagI	CCTNNNNNAGG	1 cut(s)	783
XapI	RAATTY	4 cut(s)	222, 369, 400, 440
XceI	RCATGY	1 cut(s)	582
XmiI	GTMKAC	1 cut(s)	618
XspI	CTAG	3 cut(s)	342, 420, 674
ZraI	GACGTC	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.