RLG00000029511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003693
Physical Location & Seq
Reverse (-)
39672554 .. 39673220
667 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029511

Sequence Viewer

Length: 450 bp
ATGCCTTCTAAGGACAGCAAGGTTCAGCTCAATTTCAGCATCTGCGCTGACCTGCCCGATGAGCCTTACAGGCCGTGGAAGGACAAAAGAGAAAGACGCTGTAGCTGGCACGACCACAGGAGCCTTAGCTCAGAACGATGTGAGAATTCTGTTTCGGGGCGTTTGCTCGCCGCGCAGGAAGAGCCGAGCTCACTCAAGGGGCTTTACGATCAAGCCCAGGCCGAGATCCAGCAGCTTAGAGCTGAGGTAGCGATGGTGAAAGAGAGATTCGAGCGGGTTGTTGAGGAGGCTAAGAGTCTTCAGCGAAGAGAAAGATCTACAGATGATATTCGACCAGCCGCTTTGGAAGAGGGGTACTGTCGCGGCATTCATGCCTACCGCGAGCAGATTATCCTACTCTTCCCAAACATCGACCGCAAGTACCTCCCTTTTTATTTTACGAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.55

Weight (kDa)

6.84

Isoelectric Point (pI)

63.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 60
AccBSI CCGCTC 1 cut(s) 274
AccII CGCG 3 cut(s) 173, 363, 381
AciI CCGC 6 cut(s) 171, 274, 339, 363, 379, 415
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 145
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 2 cut(s) 356, 422
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 6 cut(s) 28, 105, 129, 189, 235, 242
AluI AGCT 6 cut(s) 28, 105, 129, 189, 235, 242
Alw21I GWGCWC 1 cut(s) 191
AlwI GGATC 1 cut(s) 220
AlwNI CAGNNNCTG 1 cut(s) 42
AoxI GGCC 2 cut(s) 71, 219
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 145
AspLEI GCGC 2 cut(s) 47, 175
AsuHPI GGTGA 1 cut(s) 268
BanII GRGCYC 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 191
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 247
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 218
BfmI CTRYAG 2 cut(s) 100, 318
BfuAI ACCTGC 1 cut(s) 60
BglI GCCNNNNNGGC 1 cut(s) 70
BglII AGATCT 1 cut(s) 314
BisI GCNGC 4 cut(s) 171, 233, 339, 364
BlsI GCNGC 4 cut(s) 172, 234, 340, 365
Bme1390I CCNGG 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 290
BplI GAGNNNNNCTC 2 cut(s) 173, 205
Bpu10I CCTNAGC 2 cut(s) 125, 243
BpuEI CTTGAG 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 74, 216
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 74, 216
BseMII CTCAG 2 cut(s) 144, 234
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 244
Bsh1236I CGCG 3 cut(s) 173, 363, 381
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 2 cut(s) 73, 221
BsiEI CGRYCG 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 366
BsnI GGCC 2 cut(s) 73, 221
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 3 cut(s) 208, 225, 314
BspACI CCGC 6 cut(s) 171, 274, 339, 363, 379, 415
BspANI GGCC 2 cut(s) 73, 221
BspCNI CTCAG 2 cut(s) 143, 235
BspFNI CGCG 3 cut(s) 173, 363, 381
BspLI GGNNCC 1 cut(s) 122
BspMI ACCTGC 1 cut(s) 60
BspPI GGATC 1 cut(s) 220
BspQI GCTCTTC 1 cut(s) 174
BsrBI CCGCTC 1 cut(s) 274
BssECI CCNNGG 2 cut(s) 74, 216
BssMI GATC 3 cut(s) 208, 225, 314
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 4 cut(s) 174, 301, 342, 404
BstC8I GCNNGC 3 cut(s) 107, 168, 383
BstDEI CTNAG 6 cut(s) 9, 125, 130, 236, 243, 291
BstDSI CCRYGG 1 cut(s) 74
BstFNI CGCG 3 cut(s) 173, 363, 381
BstHHI GCGC 2 cut(s) 47, 175
BstKTI GATC 3 cut(s) 211, 228, 317
BstMBI GATC 3 cut(s) 208, 225, 314
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 5 cut(s) 61, 70, 172, 181, 248
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 2 cut(s) 100, 318
BstUI CGCG 3 cut(s) 173, 363, 381
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 2 cut(s) 225, 314
BstYI RGATCY 2 cut(s) 225, 314
BsuRI GGCC 2 cut(s) 73, 221
BtgI CCRYGG 1 cut(s) 74
BtgZI GCGATG 1 cut(s) 266
BveI ACCTGC 1 cut(s) 60
Cac8I GCNNGC 3 cut(s) 107, 168, 383
CaiI CAGNNNCTG 1 cut(s) 42
CfoI GCGC 2 cut(s) 47, 175
CseI GACGC 1 cut(s) 105
Csp6I GTAC 2 cut(s) 355, 421
CviAII CATG 1 cut(s) 371
CviQI GTAC 2 cut(s) 355, 421
DdeI CTNAG 6 cut(s) 9, 125, 130, 236, 243, 291
DpnI GATC 3 cut(s) 210, 227, 316
DpnII GATC 3 cut(s) 208, 225, 314
Eam1104I CTCTTC 4 cut(s) 174, 301, 342, 404
EarI CTCTTC 4 cut(s) 174, 301, 342, 404
Ecl136II GAGCTC 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 189
EcoRI GAATTC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 191
FaeI CATG 1 cut(s) 374
FaiI YATR 1 cut(s) 372
FatI CATG 1 cut(s) 370
FauI CCCGC 1 cut(s) 267
Fnu4HI GCNGC 4 cut(s) 171, 233, 339, 364
FriOI GRGCYC 1 cut(s) 191
Fsp4HI GCNGC 4 cut(s) 171, 233, 339, 364
GlaI GCGC 2 cut(s) 46, 174
GluI GCNGC 4 cut(s) 171, 233, 339, 364
HaeIII GGCC 2 cut(s) 73, 221
HgaI GACGC 1 cut(s) 105
HhaI GCGC 2 cut(s) 47, 175
Hin1II CATG 1 cut(s) 374
Hin6I GCGC 2 cut(s) 45, 173
HinP1I GCGC 2 cut(s) 45, 173
HinfI GANTC 2 cut(s) 267, 295
HphI GGTGA 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 133
HpyAV CCTTC 2 cut(s) 15, 73
HpyCH4III ACNGT 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 70, 172, 181, 248
HpyF3I CTNAG 6 cut(s) 9, 125, 130, 236, 243, 291
Hsp92II CATG 1 cut(s) 374
HspAI GCGC 2 cut(s) 45, 173
Kzo9I GATC 3 cut(s) 208, 225, 314
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 9 cut(s) 55, 65, 91, 103, 161, 203, 230, 242, 348
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 48
MalI GATC 3 cut(s) 210, 227, 316
MbiI CCGCTC 1 cut(s) 274
MboI GATC 3 cut(s) 208, 225, 314
MboII GAAGA 5 cut(s) 191, 290, 318, 359, 391
MflI RGATCY 2 cut(s) 225, 314
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 2 cut(s) 31, 145
MlyI GAGTC 1 cut(s) 304
MnlI CCTC 5 cut(s) 238, 277, 280, 343, 434
MspR9I CCNGG 1 cut(s) 218
Mva1269I GAATGC 1 cut(s) 366
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 3 cut(s) 173, 363, 381
MwoI GCNNNNNNNGC 5 cut(s) 61, 70, 172, 181, 248
NdeII GATC 3 cut(s) 208, 225, 314
NlaIII CATG 1 cut(s) 374
NlaIV GGNNCC 1 cut(s) 122
NmeAIII GCCGAG 2 cut(s) 210, 247
PciSI GCTCTTC 1 cut(s) 174
PctI GAATGC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 267
PkrI GCNGC 4 cut(s) 172, 234, 340, 365
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 122
PstNI CAGNNNCTG 1 cut(s) 42
PsuI RGATCY 2 cut(s) 225, 314
RsaI GTAC 2 cut(s) 356, 422
RsaNI GTAC 2 cut(s) 355, 421
SacI GAGCTC 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 174
SatI GCNGC 4 cut(s) 171, 233, 339, 364
Sau3AI GATC 3 cut(s) 208, 225, 314
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 191
SfaNI GCATC 1 cut(s) 48
SfcI CTRYAG 2 cut(s) 100, 318
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 2 cut(s) 31, 145
SsiI CCGC 6 cut(s) 171, 274, 339, 363, 379, 415
SstI GAGCTC 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 359
TaqI TCGA 3 cut(s) 270, 331, 411
TasI AATT 2 cut(s) 31, 145
TauI GCSGC 3 cut(s) 173, 341, 366
TfiI GAWTC 1 cut(s) 267
TseI GCWGC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 359
XapI RAATTY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.