FvH4_4g08130

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003468
Physical Location & Seq
Reverse (-)
7850882 .. 7852118
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08130.t1

Sequence Viewer

Length: 343 bp
ATGTGTGTGTTGAAGGGGGAGGAGCTGAGATTGCATATTTATATTAGTCCAAGGGGTGGTGGTCTAGGCACTAGGTTGGCAAAGCCATGCAGTTGTGTGGTTTTCACGTTCTGGTTGGATGTTGGTGATGTCAAAGACACAAATATCAAGAAGTGTCCAAGGCCTGATCTACAGCACCAGTGCATCAAATATCTTGAACCGCGCTCCTTGCTATATATAGTTATGCTGAGGGAGTCTTCAACATCAAATGTACATGACAATGCTACTGCACTATTAATGGATGATTCTACCACACTCCAGATAGCTTGGTTTCTCAATTCATGGAATCGGCTTGAATGCATCT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

114

Amino Acids

13.01

Weight (kDa)

7.61

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 56
AccII CGCG 1 cut(s) 202
AciI CCGC 1 cut(s) 200
AfaI GTAC 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 4 cut(s) 13, 197, 240, 335
AluBI AGCT 2 cut(s) 25, 305
AluI AGCT 2 cut(s) 25, 305
AoxI GGCC 1 cut(s) 161
AseI ATTAAT 1 cut(s) 275
AspLEI GCGC 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 228
BbvCI CCTCAGC 1 cut(s) 227
BfaI CTAG 2 cut(s) 65, 72
BfmI CTRYAG 1 cut(s) 170
BmsI GCATC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 50, 158
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 178
BseDI CCNNGG 2 cut(s) 50, 158
BseGI GGATG 2 cut(s) 124, 286
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 2 cut(s) 17, 218
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 35
BsgI GTGCAG 1 cut(s) 252
Bsh1236I CGCG 1 cut(s) 202
BshFI GGCC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 56
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 1 cut(s) 163
Bsp1407I TGTACA 1 cut(s) 250
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 200
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 2 cut(s) 18, 219
BspFNI CGCG 1 cut(s) 202
BsrGI TGTACA 1 cut(s) 250
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 50, 158
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 2 cut(s) 50, 158
BstAUI TGTACA 1 cut(s) 250
BstDEI CTNAG 2 cut(s) 26, 227
BstF5I GGATG 2 cut(s) 124, 286
BstFNI CGCG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 31, 208
BstSFI CTRYAG 1 cut(s) 170
BstUI CGCG 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 2 cut(s) 124, 286
BtsIMutI CAGTG 1 cut(s) 185
CfoI GCGC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 251
CviAII CATG 3 cut(s) 87, 254, 321
CviJI RGCY 5 cut(s) 25, 85, 163, 305, 331
CviKI_1 RGCY 5 cut(s) 25, 85, 163, 305, 331
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 2 cut(s) 26, 227
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 50, 158
Eco147I AGGCCT 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 50, 158
EcoT22I ATGCAT 1 cut(s) 341
ErhI CCWWGG 2 cut(s) 50, 158
FaeI CATG 3 cut(s) 90, 257, 324
FaiI YATR 9 cut(s) 36, 42, 88, 214, 216, 218, 224, 255, 322
FatI CATG 3 cut(s) 86, 253, 320
FokI GGATG 2 cut(s) 131, 293
FspBI CTAG 2 cut(s) 65, 72
GlaI GCGC 1 cut(s) 203
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 1 cut(s) 163
HhaI GCGC 1 cut(s) 204
Hin1II CATG 3 cut(s) 90, 257, 324
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HinfI GANTC 3 cut(s) 233, 284, 325
HphI GGTGA 1 cut(s) 137
Hpy188III TCNNGA 3 cut(s) 148, 194, 298
HpyAV CCTTC 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 5 cut(s) 34, 90, 183, 269, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 208
HpyF3I CTNAG 2 cut(s) 26, 227
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 3 cut(s) 90, 257, 324
HspAI GCGC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 2 cut(s) 22, 209
LpnPI CCDG 4 cut(s) 97, 177, 191, 311
LweI GCATC 1 cut(s) 192
MaeI CTAG 2 cut(s) 65, 72
MaeII ACGT 1 cut(s) 107
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 228
MluCI AATT 1 cut(s) 316
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 2 cut(s) 13, 222
Mph1103I ATGCAT 1 cut(s) 341
MseI TTAA 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 341
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 31, 208
NdeII GATC 1 cut(s) 166
NlaIII CATG 3 cut(s) 90, 257, 324
NsiI ATGCAT 1 cut(s) 341
PceI AGGCCT 1 cut(s) 163
PctI GAATGC 1 cut(s) 341
PfeI GAWTC 2 cut(s) 284, 325
PflMI CCANNNNNTGG 1 cut(s) 56
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PshBI ATTAAT 1 cut(s) 275
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 1 cut(s) 275
Sau3AI GATC 1 cut(s) 166
SchI GAGTC 1 cut(s) 242
SetI ASST 4 cut(s) 27, 77, 110, 307
SfaNI GCATC 1 cut(s) 192
SfcI CTRYAG 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 1 cut(s) 316
SseBI AGGCCT 1 cut(s) 163
SsiI CCGC 1 cut(s) 200
SspMI CTAG 2 cut(s) 65, 72
StuI AGGCCT 1 cut(s) 163
StyI CCWWGG 2 cut(s) 50, 158
TaiI ACGT 1 cut(s) 110
TasI AATT 1 cut(s) 316
TatI WGTACW 1 cut(s) 250
TfiI GAWTC 2 cut(s) 284, 325
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 309
TspRI CASTG 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 56
VspI ATTAAT 1 cut(s) 275
XspI CTAG 2 cut(s) 65, 72
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.