RchiOBHm_Chr5g0053601

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003468
Physical Location & Seq
Reverse (-)
56004335 .. 56007368
3034 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33088

Sequence Viewer

Length: 432 bp
ATGTTGGATAGGAACCTTTCATTTAAGGAAACGTTGGGGACAGAAGATTGTAGAGGTAAAAATCTGTTGGAGCTTAAACCAATGCTGACTTTTGCTCTGTCTCAACTGGATTTTATGTTTTTGCCTAGACTGGTTAAGGAGCTTCATGATGCAGCAGTCAAAGTTCAGAAAGTTTTGTATATCAAACTCGAAGAAACCTTGCAGATCGTGCAGTGGTGGCTGAGGAGATGGAAACCTTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTATTGCAAAAGGTTTGTCTAAGGATGAGAAAGCACAAAAGTTAGCTCTTCAACATTGGCTTGAAGCTATTGATCCACGCCATCGGTATAGACACAATTTACTCATGTACTACTACTATTTGTGGTTTGAAAGTCAGAGCAGCCAGCTTTCTTCTACTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

17.13

Weight (kDa)

9.15

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 32
AclWI GGATC 1 cut(s) 335
AfaI GTAC 1 cut(s) 377
AgsI TTSAA 3 cut(s) 320, 332, 398
AluBI AGCT 6 cut(s) 73, 142, 252, 314, 335, 415
AluI AGCT 6 cut(s) 73, 142, 252, 314, 335, 415
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 335
ApeKI GCWGC 3 cut(s) 152, 249, 408
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
BbvCI CCTCAGC 1 cut(s) 221
BbvI GCAGC 3 cut(s) 164, 261, 420
BccI CCATC 2 cut(s) 222, 357
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 247
BisI GCNGC 3 cut(s) 153, 250, 409
BlsI GCNGC 3 cut(s) 154, 251, 410
BmiI GGNNCC 1 cut(s) 14
BmsI GCATC 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 240
Bse1I ACTGG 3 cut(s) 111, 135, 430
BseGI GGATG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 3 cut(s) 111, 135, 430
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 3 cut(s) 164, 261, 420
BsgI GTGCAG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 52
Bsp143I GATC 2 cut(s) 204, 340
BspCNI CTCAG 1 cut(s) 213
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 14
BspMAI CTGCAG 1 cut(s) 251
BspPI GGATC 1 cut(s) 335
BspQI GCTCTTC 1 cut(s) 321
BsrI ACTGG 3 cut(s) 111, 135, 430
BssMI GATC 2 cut(s) 204, 340
Bst6I CTCTTC 1 cut(s) 321
BstAPI GCANNNNNTGC 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 413
BstDEI CTNAG 2 cut(s) 221, 288
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 2 cut(s) 207, 343
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 2 cut(s) 204, 340
BstMWI GCNNNNNNNGC 2 cut(s) 208, 217
BstSFI CTRYAG 1 cut(s) 247
BstV1I GCAGC 3 cut(s) 164, 261, 420
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 413
CciI TCATGA 1 cut(s) 145
Csp6I GTAC 1 cut(s) 376
CviAII CATG 2 cut(s) 146, 373
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 2 cut(s) 221, 288
DpnI GATC 2 cut(s) 206, 342
DpnII GATC 2 cut(s) 204, 340
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
FaeI CATG 2 cut(s) 149, 376
FaiI YATR 5 cut(s) 116, 147, 180, 357, 374
FaqI GGGAC 1 cut(s) 52
FatI CATG 2 cut(s) 145, 372
Fnu4HI GCNGC 3 cut(s) 153, 250, 409
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 3 cut(s) 153, 250, 409
FspBI CTAG 1 cut(s) 126
GluI GCNGC 3 cut(s) 153, 250, 409
Hin1II CATG 2 cut(s) 149, 376
HinfI GANTC 1 cut(s) 243
Hpy188I TCNGA 2 cut(s) 168, 405
Hpy188III TCNNGA 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 5 cut(s) 152, 202, 211, 249, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 217
HpyF3I CTNAG 2 cut(s) 221, 288
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 2 cut(s) 149, 376
Kzo9I GATC 2 cut(s) 204, 340
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 2 cut(s) 70, 139
LpnPI CCDG 4 cut(s) 92, 116, 411, 425
Lsp1109I GCAGC 3 cut(s) 164, 261, 420
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 32
MalI GATC 2 cut(s) 206, 342
MboI GATC 2 cut(s) 204, 340
MboII GAAGA 4 cut(s) 56, 203, 308, 411
MluCI AATT 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 2 cut(s) 47, 216
MseI TTAA 3 cut(s) 24, 75, 135
MwoI GCNNNNNNNGC 2 cut(s) 208, 217
NdeII GATC 2 cut(s) 204, 340
NlaIII CATG 2 cut(s) 149, 376
NlaIV GGNNCC 1 cut(s) 14
PagI TCATGA 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 243
PkrI GCNGC 3 cut(s) 154, 251, 410
Psp1406I AACGTT 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 251
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 3 cut(s) 24, 75, 135
SatI GCNGC 3 cut(s) 153, 250, 409
Sau3AI GATC 2 cut(s) 204, 340
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 1 cut(s) 364
SspMI CTAG 1 cut(s) 126
TaiI ACGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 189
TasI AATT 1 cut(s) 364
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 3 cut(s) 24, 75, 135
Tru9I TTAA 3 cut(s) 24, 75, 135
TscAI CASTG 1 cut(s) 218
TseI GCWGC 3 cut(s) 152, 249, 408
TspDTI ATGAA 2 cut(s) 9, 134
TspRI CASTG 1 cut(s) 218
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.