Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003468

Physical Location & Seq

Genomic Coordinates Reverse (-)

58280649 .. 58282561

Gene Structure 1913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG352000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGCTTGAGGACAGTCTACAGAGCCAATGCATCAAGTACCTTGGACCGGATGGTTTCTCATCTACTGTTGGGACCTTGAAATGGGTAAACCATGTCATTCTCTTATCTCAGGTGCCTCTCTCTCTTCCTCTCAGTGTTCGAAACATCACCACTGTTGATCTTTATTTCAGCAAGAGTTTATATGTAACTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

64

Amino Acids

7.15

Weight (kDa)

7.89

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08130
rosa_chinensis	RchiOBHm_Chr4g0393901 RchiOBHm_Chr4g0398321 RchiOBHm_Chr5g0053561 RchiOBHm_Chr5g0053581 RchiOBHm_Chr5g0053601 RchiOBHm_Chr6g0258141 RchiOBHm_Chr6g0258771 RchiOBHm_Chr6g0258791 RchiOBHm_Chr6g0258801
rosa_laevigata	RLG00000012857 RLG00000014120 RLG00000033861
rosa_multiflora	Rmu_sc0002036.1_g000007 Rmu_sc0005240.1_g000006 Rmu_ssc0000432.1_g000109
rosa_roxburghii	Rroxscaffold_1G00054950 Rroxscaffold_3G00228900 Rroxscaffold_4G00282600
rosa_rugosa	Rorug06G0348800
rosa_samantha	Rh1CG128400 Rh1DG140700 Rh3AG045400 Rh3CG136700 Rh3CG369500 Rh4AG078100 Rh5AG351900 Rh5AG352000 Rh5AG352100 Rh5AG466000 Rh5CG572800 Rh6AG011500 Rh6CG043300 Rh6CG248800
rosa_wichuraiana	Rw1G022960 Rw7G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	16
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	2 cut(s)	46, 81
AgsI	TTSAA	1 cut(s)	79
AspS9I	GGNCC	2 cut(s)	44, 72
AsuHPI	GGTGA	1 cut(s)	139
AsuII	TTCGAA	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	44, 72
BanI	GGYRCC	1 cut(s)	112
BccI	CCATC	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	17
Bme18I	GGWCC	2 cut(s)	44, 72
BmgT120I	GGNCC	2 cut(s)	44, 72
BmiI	GGNNCC	2 cut(s)	73, 114
BmsI	GCATC	1 cut(s)	39
Bpu14I	TTCGAA	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 81
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	46, 81
BseMII	CTCAG	2 cut(s)	122, 145
BshNI	GGYRCC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	46, 81
BsmFI	GGGAC	1 cut(s)	85
Bsp119I	TTCGAA	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	157
BspCNI	CTCAG	2 cut(s)	121, 144
BspLI	GGNNCC	2 cut(s)	73, 114
BspT104I	TTCGAA	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	40
Bst4CI	ACNGT	3 cut(s)	14, 67, 154
Bst6I	CTCTTC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	139
BstDEI	CTNAG	3 cut(s)	108, 131, 189
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	139, 150
Cfr13I	GGNCC	2 cut(s)	44, 72
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	1 cut(s)	24
CviKI_1	RGCY	1 cut(s)	24
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	3 cut(s)	108, 131, 189
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	40
Eco47I	GGWCC	2 cut(s)	44, 72
EcoO109I	RGGNCCY	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	1 cut(s)	95
FaiI	YATR	3 cut(s)	93, 181, 183
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	16
FokI	GGATG	1 cut(s)	62
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	1 cut(s)	95
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	17, 88
Hpy8I	GTNNAC	2 cut(s)	17, 88
HpyCH4III	ACNGT	3 cut(s)	14, 67, 154
HpyCH4V	TGCA	1 cut(s)	30
HpyF3I	CTNAG	3 cut(s)	108, 131, 189
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	2 cut(s)	60, 95
LweI	GCATC	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	116
MnlI	CCTC	2 cut(s)	126, 138
Mph1103I	ATGCAT	1 cut(s)	32
MspI	CCGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	2 cut(s)	73, 114
NsiI	ATGCAT	1 cut(s)	32
NspV	TTCGAA	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	73, 114
PspPI	GGNCC	2 cut(s)	44, 72
PspPPI	RGGWCCY	1 cut(s)	72
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	2 cut(s)	44, 72
SetI	ASST	3 cut(s)	42, 77, 114
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	17
SfuI	TTCGAA	1 cut(s)	139
SgeI	CNNG	8 cut(s)	17, 46, 53, 59, 88, 104, 122, 184
SinI	GGWCC	2 cut(s)	44, 72
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	3 cut(s)	14, 67, 154
TaqI	TCGA	1 cut(s)	139
TscAI	CASTG	2 cut(s)	139, 157
TspRI	CASTG	2 cut(s)	139, 157
VpaK11BI	GGWCC	2 cut(s)	44, 72
XmiI	GTMKAC	1 cut(s)	16
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.