Rh6CG043300

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003468
Physical Location & Seq
Forward (+)
4239508 .. 4243132
3625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG043300.1

Sequence Viewer

Length: 396 bp
ATGTTGGATAGGAACCTTTCGTTTAAGGAAACGTTGGGGACAGAAGATTGTAGAGGTAAAAATCTGTTGAAGCATAAACTAATGCCGATTTTTGCTCTGTCTCAACCGGATTTTATGTTTTTGCCTAGACCAGTTAAGGAGCTTGATGATGCAGCAGTCAAAGTTCAGAAAGTTTTGTATATCGAACTCGAAGAAACCTTGCAGATCGTGCAGTGGTGGCTGAGGAGGTATGATAATTATTTTGTTACTTGCTTGATTGGAAAAGGTTTGTCTAAGGATGAGAAAGCACAAAAGTTAGCATTTCAACATTGGCTTGAAGCTGATGGTTTCTTATCTACTGTTGGGACCTTGAAATGGGTAGACCATGTCATTCTCTTATCTCAGATTTCAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

15.25

Weight (kDa)

6.83

Isoelectric Point (pI)

31.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 360
AclI AACGTT 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 354
AgsI TTSAA 4 cut(s) 70, 305, 317, 352
AluBI AGCT 2 cut(s) 142, 320
AluI AGCT 2 cut(s) 142, 320
Alw26I GTCTC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 345
AvaII GGWCC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 126
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 345
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 2 cut(s) 14, 346
BmsI GCATC 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMII CTCAG 2 cut(s) 212, 395
BseNI ACTGG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 2 cut(s) 52, 358
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 2 cut(s) 52, 358
Bsp143I GATC 1 cut(s) 204
BspCNI CTCAG 2 cut(s) 213, 394
BspLI GGNNCC 2 cut(s) 14, 346
BsrI ACTGG 1 cut(s) 131
BssMI GATC 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 340
BstAPI GCANNNNNTGC 1 cut(s) 208
BstDEI CTNAG 3 cut(s) 221, 273, 381
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 2 cut(s) 208, 217
BstV1I GCAGC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 345
CviAII CATG 1 cut(s) 365
CviJI RGCY 4 cut(s) 142, 220, 313, 320
CviKI_1 RGCY 4 cut(s) 142, 220, 313, 320
DdeI CTNAG 3 cut(s) 221, 273, 381
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 345
FaeI CATG 1 cut(s) 368
FaiI YATR 5 cut(s) 75, 116, 180, 231, 366
FaqI GGGAC 2 cut(s) 52, 358
FatI CATG 1 cut(s) 364
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 153
HapII CCGG 1 cut(s) 107
Hin1II CATG 1 cut(s) 368
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 168, 384
Hpy8I GTNNAC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 152, 202, 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 217
HpyF3I CTNAG 3 cut(s) 221, 273, 381
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 1 cut(s) 368
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 2 cut(s) 120, 144
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 2 cut(s) 56, 203
MluCI AATT 1 cut(s) 235
MnlI CCTC 3 cut(s) 47, 216, 219
MseI TTAA 2 cut(s) 24, 135
MspI CCGG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 208, 217
NdeII GATC 1 cut(s) 204
NlaIII CATG 1 cut(s) 368
NlaIV GGNNCC 2 cut(s) 14, 346
PflFI GACNNNGTC 1 cut(s) 365
PkrI GCNGC 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 345
Psp1406I AACGTT 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 345
PspN4I GGNNCC 2 cut(s) 14, 346
PspPI GGNCC 1 cut(s) 345
PspPPI RGGWCCY 1 cut(s) 345
PsyI GACNNNGTC 1 cut(s) 365
SaqAI TTAA 2 cut(s) 24, 135
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 345
SetI ASST 9 cut(s) 18, 35, 58, 144, 200, 230, 268, 322, 350
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 1 cut(s) 345
Sse9I AATT 1 cut(s) 235
SspMI CTAG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 1 cut(s) 35
TaqI TCGA 2 cut(s) 183, 189
TasI AATT 1 cut(s) 235
Tru1I TTAA 2 cut(s) 24, 135
Tru9I TTAA 2 cut(s) 24, 135
TscAI CASTG 1 cut(s) 218
TseI GCWGC 1 cut(s) 152
TspRI CASTG 1 cut(s) 218
Tth111I GACNNNGTC 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 345
XmiI GTMKAC 1 cut(s) 360
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.