RLG00000012857

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003468
Physical Location & Seq
Reverse (-)
23235527 .. 23239559
4033 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012857

Sequence Viewer

Length: 687 bp
ATGTTGGATAGGAACCTTTCATTTAAGGAAACGTTGGGGACAGAAGATTATAGAGTTACAAATCTGTTGAAGCTTAAACCAATGCTGACTTTTGCTCTGTCTCAACCGGATTTTATGTTTTTGCCTAGACTGGTTAAGGAGCTTGATGATGCAGCAGTCAAAGTTCAGAAAGTTTTGTATATCAAACTCGAAGAAACCTTGCAGATCGTGCAGTGGTGGCTGAGGAGGTATGATGGAAACCTTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTGTCATTCTTCGATGTTGAGAAGCCGGAAACCGCCTCTTTGTGTAATAACACTTGCTTTGTTATTTCAGATTGGAAAAGATTGATCCACGCCATCGGTATAGACATAATTTACACGTACTACGATTTGTGGTTTGAAAGTCAGAGCAGCCAGCCTTTCTTCTACTGGCTGAATGTTGGAGATGGCAAGGAAACAAATCTTGAGCTATGCTCGAGGACAGTTCTACAGAGCAAATGCATCAAGTACCTTGGACCGGATGGTTTCTCATCTAATGTTGGGACCTTGAAATGGGTAAACCATGTCATTCTCTTATCTCAGGTGCTGGGCTGGTTGAAACTGAATTTGAACAACAATGGGAGATGCACAGTAGAAGATAAAAAGCTAAAAGAGGGTCGAGTGAGAAATTGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

26.44

Weight (kDa)

8.14

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 306
AclI AACGTT 1 cut(s) 32
AclWI GGATC 1 cut(s) 352
AcsI RAATTY 1 cut(s) 613
AfaI GTAC 2 cut(s) 392, 518
AfiI CCNNNNNNNGG 2 cut(s) 526, 561
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 5 cut(s) 70, 410, 559, 607, 619
AluBI AGCT 5 cut(s) 73, 142, 257, 478, 655
AluI AGCT 5 cut(s) 73, 142, 257, 478, 655
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 352
AlwNI CAGNNNCTG 1 cut(s) 595
Ama87I CYCGRG 1 cut(s) 484
ApeKI GCWGC 3 cut(s) 152, 254, 420
ApoI RAATTY 1 cut(s) 613
AspS9I GGNCC 2 cut(s) 524, 552
AvaI CYCGRG 1 cut(s) 484
AvaII GGWCC 2 cut(s) 524, 552
BbvCI CCTCAGC 1 cut(s) 221
BbvI GCAGC 3 cut(s) 164, 266, 432
BccI CCATC 4 cut(s) 227, 374, 449, 524
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 2 cut(s) 252, 497
BisI GCNGC 3 cut(s) 153, 255, 421
BlsI GCNGC 3 cut(s) 154, 256, 422
Bme18I GGWCC 2 cut(s) 524, 552
BmeT110I CYCGRG 1 cut(s) 484
BmgT120I GGNCC 2 cut(s) 524, 552
BmiI GGNNCC 2 cut(s) 14, 553
BmsI GCATC 3 cut(s) 139, 519, 623
BplI GAGNNNNNCTC 2 cut(s) 467, 499
Bpu10I CCTNAGC 1 cut(s) 221
BpuEI CTTGAG 2 cut(s) 245, 494
BsaAI YACGTR 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 520
BsaWI WCCGGW 2 cut(s) 106, 526
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 561
Bse1I ACTGG 2 cut(s) 135, 443
BseDI CCNNGG 1 cut(s) 520
BseGI GGATG 1 cut(s) 535
BseLI CCNNNNNNNGG 2 cut(s) 526, 561
BseMII CTCAG 2 cut(s) 212, 602
BseNI ACTGG 2 cut(s) 135, 443
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 3 cut(s) 164, 266, 432
BseYI CCCAGC 1 cut(s) 595
BsgI GTGCAG 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 3 cut(s) 107, 299, 527
BslFI GGGAC 2 cut(s) 52, 565
BslI CCNNNNNNNGG 2 cut(s) 526, 561
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 2 cut(s) 52, 565
BsoBI CYCGRG 1 cut(s) 484
Bsp143I GATC 2 cut(s) 204, 357
BspACI CCGC 1 cut(s) 306
BspCNI CTCAG 2 cut(s) 213, 601
BspLI GGNNCC 2 cut(s) 14, 553
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 1 cut(s) 352
BsrI ACTGG 2 cut(s) 135, 443
BssECI CCNNGG 1 cut(s) 520
BssMI GATC 2 cut(s) 204, 357
BssT1I CCWWGG 1 cut(s) 520
Bst4CI ACNGT 2 cut(s) 493, 640
BstAPI GCANNNNNTGC 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 425
BstDEI CTNAG 2 cut(s) 221, 588
BstF5I GGATG 1 cut(s) 535
BstKTI GATC 2 cut(s) 207, 360
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 2 cut(s) 204, 357
BstMWI GCNNNNNNNGC 2 cut(s) 208, 217
BstSFI CTRYAG 2 cut(s) 252, 497
BstV1I GCAGC 3 cut(s) 164, 266, 432
BtsCI GGATG 1 cut(s) 535
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 425
CaiI CAGNNNCTG 1 cut(s) 595
Cfr13I GGNCC 2 cut(s) 524, 552
Csp6I GTAC 2 cut(s) 391, 517
CviAII CATG 1 cut(s) 572
CviQI GTAC 2 cut(s) 391, 517
DdeI CTNAG 2 cut(s) 221, 588
DpnI GATC 2 cut(s) 206, 359
DpnII GATC 2 cut(s) 204, 357
Eco130I CCWWGG 1 cut(s) 520
Eco47I GGWCC 2 cut(s) 524, 552
Eco88I CYCGRG 1 cut(s) 484
EcoO109I RGGNCCY 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 520
EcoT22I ATGCAT 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 520
FaeI CATG 1 cut(s) 575
FaiI YATR 8 cut(s) 51, 116, 180, 231, 374, 380, 481, 573
FaqI GGGAC 2 cut(s) 52, 565
FatI CATG 1 cut(s) 571
Fnu4HI GCNGC 3 cut(s) 153, 255, 421
FokI GGATG 1 cut(s) 542
Fsp4HI GCNGC 3 cut(s) 153, 255, 421
FspBI CTAG 1 cut(s) 126
GluI GCNGC 3 cut(s) 153, 255, 421
GsaI CCCAGC 1 cut(s) 599
HapII CCGG 3 cut(s) 107, 299, 527
Hin1II CATG 1 cut(s) 575
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 1 cut(s) 248
HpaII CCGG 3 cut(s) 107, 299, 527
Hpy166II GTNNAC 1 cut(s) 568
Hpy188I TCNGA 3 cut(s) 168, 343, 417
Hpy188III TCNNGA 1 cut(s) 473
Hpy8I GTNNAC 1 cut(s) 568
HpyCH4III ACNGT 2 cut(s) 493, 640
HpyCH4IV ACGT 2 cut(s) 32, 389
HpyCH4V TGCA 6 cut(s) 152, 202, 211, 254, 510, 636
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 217
HpyF3I CTNAG 2 cut(s) 221, 588
HpySE526I ACGT 2 cut(s) 32, 389
Hsp92II CATG 1 cut(s) 575
Kzo9I GATC 2 cut(s) 204, 357
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 9 cut(s) 116, 120, 312, 424, 437, 540, 575, 581, 586
Lsp1109I GCAGC 3 cut(s) 164, 266, 432
LweI GCATC 3 cut(s) 139, 519, 623
MaeI CTAG 1 cut(s) 126
MaeII ACGT 2 cut(s) 32, 389
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 206, 359
MboI GATC 2 cut(s) 204, 357
MboII GAAGA 5 cut(s) 56, 203, 274, 424, 656
MluCI AATT 3 cut(s) 381, 613, 676
MmeI TCCRAC 1 cut(s) 430
MnlI CCTC 5 cut(s) 216, 219, 319, 480, 655
Mph1103I ATGCAT 1 cut(s) 512
MseI TTAA 3 cut(s) 24, 75, 135
MspI CCGG 3 cut(s) 107, 299, 527
MwoI GCNNNNNNNGC 2 cut(s) 208, 217
NdeII GATC 2 cut(s) 204, 357
NlaIII CATG 1 cut(s) 575
NlaIV GGNNCC 2 cut(s) 14, 553
NsiI ATGCAT 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 484
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 3 cut(s) 154, 256, 422
Ppu21I YACGTR 1 cut(s) 390
PpuMI RGGWCCY 1 cut(s) 552
Psp1406I AACGTT 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 552
PspFI CCCAGC 1 cut(s) 595
PspN4I GGNNCC 2 cut(s) 14, 553
PspPI GGNCC 2 cut(s) 524, 552
PspPPI RGGWCCY 1 cut(s) 552
PspXI VCTCGAGB 1 cut(s) 484
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 595
RsaI GTAC 2 cut(s) 392, 518
RsaNI GTAC 2 cut(s) 391, 517
SaqAI TTAA 3 cut(s) 24, 75, 135
SatI GCNGC 3 cut(s) 153, 255, 421
Sau3AI GATC 2 cut(s) 204, 357
Sau96I GGNCC 2 cut(s) 524, 552
SfaNI GCATC 3 cut(s) 139, 519, 623
SfcI CTRYAG 2 cut(s) 252, 497
Sfr274I CTCGAG 1 cut(s) 484
SinI GGWCC 2 cut(s) 524, 552
SlaI CTCGAG 1 cut(s) 484
SmlI CTYRAG 3 cut(s) 260, 473, 484
SmoI CTYRAG 3 cut(s) 260, 473, 484
Sse9I AATT 3 cut(s) 381, 613, 676
SsiI CCGC 1 cut(s) 306
SspMI CTAG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 520
TaaI ACNGT 2 cut(s) 493, 640
TaiI ACGT 2 cut(s) 35, 392
TaqI TCGA 4 cut(s) 189, 285, 485, 667
TasI AATT 3 cut(s) 381, 613, 676
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 3 cut(s) 24, 75, 135
Tru9I TTAA 3 cut(s) 24, 75, 135
TscAI CASTG 1 cut(s) 218
TseI GCWGC 3 cut(s) 152, 254, 420
TspDTI ATGAA 1 cut(s) 9
TspRI CASTG 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 524, 552
XapI RAATTY 1 cut(s) 613
XhoI CTCGAG 1 cut(s) 484
XspI CTAG 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.