Rroxscaffold_4G00282600

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
4664948 .. 4669359
4412 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00282600.1

Sequence Viewer

Length: 471 bp
ATGATGCAGCAGTCAAGGTTTAGAAGGTTTACAAGAGTTATCGAACTCGAAGAAACCTTGCAGATTGTGCAGTGGTGGCTGAGGAGGTGGAGATACTCATTAGATTCTCTGGCTGATTCTGCAGCTCTCAAGCAGAGTTCTGTGTCATTCTTCGATGTTGAGAAGCCGGAAACCGCCGTTTTGTGGTGTGCAAGGGCTAGGACTAGGCTGCGAAGATGGAAAACTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTGTCATTCTTCGATGTTGAGAAGCCGGAAACCGCCGTTTTGTGGTGTGCAAGGGCTAGGACTAGGCTGCGAAGATTGATCCACCCCATCGGTTTAGGGTTTAGGCTGATCTTTATTTCAGCAAGAGTTGAAACTAAATTTGAACAACAGTGGGAAGATGATAAGGCGGAAGAATGGAAAAATGCGATTCACAATGGTGAACATGTTTGGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

18.7

Weight (kDa)

9.74

Isoelectric Point (pI)

71.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 174, 288, 422
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 183, 297
AflIII ACRYGT 1 cut(s) 457
AgsI TTSAA 2 cut(s) 386, 398
AleI CACNNNNGTG 1 cut(s) 450
AluBI AGCT 2 cut(s) 125, 239
AluI AGCT 2 cut(s) 125, 239
AlwI GGATC 1 cut(s) 328
ApeKI GCWGC 5 cut(s) 7, 122, 208, 236, 322
ApoI RAATTY 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 464
BbvCI CCTCAGC 1 cut(s) 80
BbvI GCAGC 5 cut(s) 19, 134, 195, 248, 309
BccI CCATC 2 cut(s) 210, 350
BceAI ACGGC 2 cut(s) 161, 275
BfaI CTAG 4 cut(s) 198, 204, 312, 318
BfmI CTRYAG 2 cut(s) 120, 234
BisI GCNGC 5 cut(s) 8, 123, 209, 237, 323
BlsI GCNGC 5 cut(s) 9, 124, 210, 238, 324
Bpu10I CCTNAGC 1 cut(s) 80
BpuEI CTTGAG 2 cut(s) 113, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 297
BseLI CCNNNNNNNGG 2 cut(s) 183, 297
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 5 cut(s) 19, 134, 195, 248, 309
BsgI GTGCAG 1 cut(s) 89
BsiSI CCGG 2 cut(s) 167, 281
BslI CCNNNNNNNGG 2 cut(s) 183, 297
Bsp143I GATC 2 cut(s) 333, 363
BspACI CCGC 3 cut(s) 174, 288, 422
BspCNI CTCAG 1 cut(s) 72
BspMAI CTGCAG 2 cut(s) 124, 238
BspPI GGATC 1 cut(s) 328
BssMI GATC 2 cut(s) 333, 363
Bst4CI ACNGT 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 80
BstKTI GATC 2 cut(s) 336, 366
BstMBI GATC 2 cut(s) 333, 363
BstMWI GCNNNNNNNGC 3 cut(s) 67, 76, 119
BstNSI RCATGY 1 cut(s) 461
BstSFI CTRYAG 2 cut(s) 120, 234
BstV1I GCAGC 5 cut(s) 19, 134, 195, 248, 309
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 2 cut(s) 77, 410
CviAII CATG 1 cut(s) 458
DdeI CTNAG 1 cut(s) 80
DpnI GATC 2 cut(s) 335, 365
DpnII GATC 2 cut(s) 333, 363
EciI GGCGGA 1 cut(s) 437
FaeI CATG 1 cut(s) 461
FaiI YATR 1 cut(s) 459
FatI CATG 1 cut(s) 457
Fnu4HI GCNGC 5 cut(s) 8, 123, 209, 237, 323
Fsp4HI GCNGC 5 cut(s) 8, 123, 209, 237, 323
FspBI CTAG 4 cut(s) 198, 204, 312, 318
GluI GCNGC 5 cut(s) 8, 123, 209, 237, 323
HapII CCGG 2 cut(s) 167, 281
Hin1II CATG 1 cut(s) 461
HinfI GANTC 4 cut(s) 104, 116, 230, 442
HpaII CCGG 2 cut(s) 167, 281
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 2 cut(s) 30, 455
Hpy8I GTNNAC 2 cut(s) 30, 455
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 1 cut(s) 405
HpyCH4V TGCA 7 cut(s) 7, 61, 70, 122, 191, 236, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 76, 119
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 1 cut(s) 461
Kzo9I GATC 2 cut(s) 333, 363
LpnPI CCDG 3 cut(s) 95, 180, 294
Lsp1109I GCAGC 5 cut(s) 19, 134, 195, 248, 309
MaeI CTAG 4 cut(s) 198, 204, 312, 318
MalI GATC 2 cut(s) 335, 365
MboI GATC 2 cut(s) 333, 363
MboII GAAGA 7 cut(s) 62, 142, 225, 256, 339, 422, 437
MluCI AATT 1 cut(s) 392
MnlI CCTC 2 cut(s) 75, 78
MslI CAYNNNNRTG 1 cut(s) 450
MspI CCGG 2 cut(s) 167, 281
MwoI GCNNNNNNNGC 3 cut(s) 67, 76, 119
NdeII GATC 2 cut(s) 333, 363
NlaIII CATG 1 cut(s) 461
NspI RCATGY 1 cut(s) 461
OliI CACNNNNGTG 1 cut(s) 450
PciI ACATGT 1 cut(s) 457
PfeI GAWTC 4 cut(s) 104, 116, 230, 442
PkrI GCNGC 5 cut(s) 9, 124, 210, 238, 324
PscI ACATGT 1 cut(s) 457
PstI CTGCAG 2 cut(s) 124, 238
RseI CAYNNNNRTG 1 cut(s) 450
SatI GCNGC 5 cut(s) 8, 123, 209, 237, 323
Sau3AI GATC 2 cut(s) 333, 363
SetI ASST 6 cut(s) 20, 29, 59, 89, 127, 241
SfcI CTRYAG 2 cut(s) 120, 234
SmiMI CAYNNNNRTG 1 cut(s) 450
SmlI CTYRAG 2 cut(s) 128, 242
SmoI CTYRAG 2 cut(s) 128, 242
Sse9I AATT 1 cut(s) 392
SsiI CCGC 3 cut(s) 174, 288, 422
SspMI CTAG 4 cut(s) 198, 204, 312, 318
TaaI ACNGT 1 cut(s) 405
TaqI TCGA 4 cut(s) 42, 48, 153, 267
TasI AATT 1 cut(s) 392
TfiI GAWTC 4 cut(s) 104, 116, 230, 442
TscAI CASTG 2 cut(s) 77, 410
TseI GCWGC 5 cut(s) 7, 122, 208, 236, 322
TspRI CASTG 2 cut(s) 77, 410
XapI RAATTY 1 cut(s) 392
XceI RCATGY 1 cut(s) 461
XspI CTAG 4 cut(s) 198, 204, 312, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.