RchiOBHm_Chr6g0258791

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003468
Physical Location & Seq
Forward (+)
14136087 .. 14139234
3148 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23204

Sequence Viewer

Length: 429 bp
ATGCAAAGGAGTATCTGGATTGTTCTTTTGCCACTGTTCCTGGTTTTGTTAGTTGCTGTTAGTTGGGTGTCCTATTGTGATTCAGATATTGGGAACAGTGTGCGATCAAATTTTGGAAGTGCTTTGAATTCAGTCTCTATAAAAGGTCAAGCACTGAGATACAAAAGAGAAAACAACAAATCAGTTTGGGTTTGTTCTGGAAAAGACCGGTTAAGGAGCTTGATGCAGCAGTCAAAGTTCAGAAGGTTTACAAGAGTTATCGAACTTGAAGAAACCTTACAGATTGTGCAGTGGTGGCTGAGGAGATGGAAAACTTTAGATCCTGCAGCTCTCAAGCAGAGTTCTGTATCATTCTTCGAAGTTGAGAAGCCGGAAACCGCCGTTTTTTGGTGGGCAAGGGCTAGGACTAGGCTAGGAAGGTTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.7

Weight (kDa)

10.7

Isoelectric Point (pI)

54.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 378
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 2 cut(s) 109, 127
AfiI CCNNNNNNNGG 1 cut(s) 387
AgeI ACCGGT 1 cut(s) 207
AgsI TTSAA 2 cut(s) 127, 269
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 2 cut(s) 219, 329
AluI AGCT 2 cut(s) 219, 329
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 226, 326
ApoI RAATTY 2 cut(s) 109, 127
AsiGI ACCGGT 1 cut(s) 207
AsuII TTCGAA 1 cut(s) 357
BarI GAAGNNNNNNTAC 2 cut(s) 261, 293
BbvCI CCTCAGC 1 cut(s) 299
BbvI GCAGC 2 cut(s) 238, 338
BccI CCATC 1 cut(s) 300
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 3 cut(s) 402, 408, 413
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 2 cut(s) 227, 327
BlsI GCNGC 2 cut(s) 228, 328
Bme1390I CCNGG 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 299
Bpu14I TTCGAA 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 317
BsaWI WCCGGW 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse118I RCCGGY 1 cut(s) 207
BseBI CCWGG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 146, 290
BseRI GAGGAG 1 cut(s) 316
BseXI GCAGC 2 cut(s) 238, 338
BsgI GTGCAG 1 cut(s) 308
BshTI ACCGGT 1 cut(s) 207
BsiSI CCGG 2 cut(s) 208, 371
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 1 cut(s) 139
Bsp119I TTCGAA 1 cut(s) 357
Bsp143I GATC 2 cut(s) 104, 319
BspACI CCGC 1 cut(s) 378
BspCNI CTCAG 2 cut(s) 147, 291
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 1 cut(s) 314
BspT104I TTCGAA 1 cut(s) 357
BsrFI RCCGGY 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 207
BssMI GATC 2 cut(s) 104, 319
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 2 cut(s) 36, 98
BstBI TTCGAA 1 cut(s) 357
BstDEI CTNAG 2 cut(s) 155, 299
BstKTI GATC 2 cut(s) 107, 322
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 2 cut(s) 104, 319
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 2 cut(s) 238, 338
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 296
BtsIMutI CAGTG 4 cut(s) 32, 103, 152, 296
Cfr10I RCCGGY 1 cut(s) 207
CspAI ACCGGT 1 cut(s) 207
CviJI RGCY 6 cut(s) 219, 298, 329, 370, 401, 412
CviKI_1 RGCY 6 cut(s) 219, 298, 329, 370, 401, 412
DdeI CTNAG 2 cut(s) 155, 299
DpnI GATC 2 cut(s) 106, 321
DpnII GATC 2 cut(s) 104, 319
EcoRI GAATTC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 39
FaiI YATR 1 cut(s) 140
Fnu4HI GCNGC 2 cut(s) 227, 327
Fsp4HI GCNGC 2 cut(s) 227, 327
FspBI CTAG 3 cut(s) 402, 408, 413
GluI GCNGC 2 cut(s) 227, 327
HapII CCGG 2 cut(s) 208, 371
HinfI GANTC 1 cut(s) 80
HpaII CCGG 2 cut(s) 208, 371
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 2 cut(s) 85, 242
Hpy188III TCNNGA 2 cut(s) 16, 198
Hpy8I GTNNAC 1 cut(s) 249
HpyAV CCTTC 2 cut(s) 237, 411
HpyCH4III ACNGT 2 cut(s) 36, 98
HpyCH4V TGCA 4 cut(s) 4, 226, 289, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 2 cut(s) 155, 299
Kzo9I GATC 2 cut(s) 104, 319
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 6 cut(s) 26, 53, 183, 221, 336, 384
Lsp1109I GCAGC 2 cut(s) 238, 338
LweI GCATC 1 cut(s) 213
MaeI CTAG 3 cut(s) 402, 408, 413
MalI GATC 2 cut(s) 106, 321
MboI GATC 2 cut(s) 104, 319
MboII GAAGA 2 cut(s) 281, 346
MflI RGATCY 1 cut(s) 319
MluCI AATT 2 cut(s) 109, 127
MnlI CCTC 1 cut(s) 294
MseI TTAA 1 cut(s) 212
MspI CCGG 2 cut(s) 208, 371
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 295
NdeII GATC 2 cut(s) 104, 319
NspV TTCGAA 1 cut(s) 357
PfeI GAWTC 1 cut(s) 80
PinAI ACCGGT 1 cut(s) 207
PkrI GCNGC 2 cut(s) 228, 328
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PstI CTGCAG 1 cut(s) 328
PsuI RGATCY 1 cut(s) 319
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 2 cut(s) 227, 327
Sau3AI GATC 2 cut(s) 104, 319
ScrFI CCNGG 1 cut(s) 41
SetI ASST 6 cut(s) 148, 221, 248, 278, 331, 422
SfaNI GCATC 1 cut(s) 213
SfcI CTRYAG 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 2 cut(s) 109, 127
SsiI CCGC 1 cut(s) 378
SspMI CTAG 3 cut(s) 402, 408, 413
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 36, 98
TaqI TCGA 2 cut(s) 261, 357
TasI AATT 2 cut(s) 109, 127
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 4 cut(s) 39, 103, 159, 296
TseI GCWGC 2 cut(s) 226, 326
TspRI CASTG 4 cut(s) 39, 103, 159, 296
XapI RAATTY 2 cut(s) 109, 127
XspI CTAG 3 cut(s) 402, 408, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.