RchiOBHm_Chr6g0258771

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
14123066 .. 14128341
5276 bp
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UTR
Exon/CDS
Intron
PRQ23202

Sequence Viewer

Length: 510 bp
ATGATGCAGCAGTCAAAGTTCAGAAGGTTTACAAGAGTTATCGAACTCGAAGAAACCCTGCAGGTTGTGCAGTGGTGGCTGAGGAGATGGAAAACTTTAGATCCTGCAGCTCTCAAGCAGAGTTCTGTGTCATTCTTCGATGTTGAGAAGCCGGAAACCGCCGTTTTGTGGTGGGCAAGGGCTAGGACTAGGCTGCGAAGGTTTATTGGAAAAGGTTTGTCTAAGGATGAGAAAGCACAAAAGTTAGCTCTTCAACATTGGCTTGCAGCTATTCATCCACGCCATCTCTATGGACACAATTTACACATGTACTACGATTTGTGGTTTGAAAGTGAGAGCAGCCAGCCTTTCTTCTACTGGCTGGATGTTGGAGATGGCAAAGAAACAAATCTTGAGATATGCTTGAGGACAGTTCTACAGAGCCAATGCATCAAGTACCTTGGACCGAAAGAAAGGAAAGCCTATGAAGTAGTAGTCAAAGATGGCAAGCTAATACTGATTGATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

20.25

Weight (kDa)

9.46

Isoelectric Point (pI)

66.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 52
AciI CCGC 1 cut(s) 159
AclWI GGATC 1 cut(s) 95
AfaI GTAC 2 cut(s) 311, 437
AfiI CCNNNNNNNGG 1 cut(s) 168
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 2 cut(s) 254, 329
AluBI AGCT 4 cut(s) 110, 248, 269, 490
AluI AGCT 4 cut(s) 110, 248, 269, 490
AlwI GGATC 1 cut(s) 95
ApeKI GCWGC 5 cut(s) 7, 107, 193, 266, 339
AspS9I GGNCC 1 cut(s) 443
AvaII GGWCC 1 cut(s) 443
BbvCI CCTCAGC 1 cut(s) 80
BbvI GCAGC 5 cut(s) 19, 119, 180, 278, 351
BccI CCATC 4 cut(s) 81, 291, 368, 476
BceAI ACGGC 1 cut(s) 146
BfaI CTAG 2 cut(s) 183, 189
BfmI CTRYAG 3 cut(s) 59, 105, 416
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 5 cut(s) 8, 108, 194, 267, 340
BlsI GCNGC 5 cut(s) 9, 109, 195, 268, 341
Bme18I GGWCC 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 443
BmsI GCATC 1 cut(s) 438
Bpu10I CCTNAGC 1 cut(s) 80
BpuEI CTTGAG 3 cut(s) 98, 413, 424
BsaJI CCNNGG 1 cut(s) 439
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 3 cut(s) 232, 274, 370
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 362
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 5 cut(s) 19, 119, 180, 278, 351
BsgI GTGCAG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 168
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 72
BspMAI CTGCAG 2 cut(s) 63, 109
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 255
BsrI ACTGG 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 439
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 67
BstC8I GCNNGC 3 cut(s) 264, 344, 488
BstDEI CTNAG 2 cut(s) 80, 222
BstF5I GGATG 3 cut(s) 232, 274, 370
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 67, 76
BstNSI RCATGY 1 cut(s) 310
BstSFI CTRYAG 3 cut(s) 59, 105, 416
BstV1I GCAGC 5 cut(s) 19, 119, 180, 278, 351
BstX2I RGATCY 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 290
BstYI RGATCY 1 cut(s) 100
BtsCI GGATG 3 cut(s) 232, 274, 370
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 3 cut(s) 264, 344, 488
Cfr13I GGNCC 1 cut(s) 443
Csp6I GTAC 2 cut(s) 310, 436
CviAII CATG 1 cut(s) 307
CviQI GTAC 2 cut(s) 310, 436
DdeI CTNAG 2 cut(s) 80, 222
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 439
EcoT22I ATGCAT 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 439
FaeI CATG 1 cut(s) 310
FaiI YATR 4 cut(s) 291, 308, 400, 465
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 5 cut(s) 8, 108, 194, 267, 340
FokI GGATG 3 cut(s) 239, 261, 377
Fsp4HI GCNGC 5 cut(s) 8, 108, 194, 267, 340
FspBI CTAG 2 cut(s) 183, 189
GluI GCNGC 5 cut(s) 8, 108, 194, 267, 340
HapII CCGG 1 cut(s) 152
Hin1II CATG 1 cut(s) 310
HpaII CCGG 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 2 cut(s) 23, 509
Hpy188III TCNNGA 1 cut(s) 392
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 2 cut(s) 18, 192
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4V TGCA 6 cut(s) 7, 61, 70, 107, 266, 429
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 76
HpyF3I CTNAG 2 cut(s) 80, 222
Hsp92II CATG 1 cut(s) 310
Kzo9I GATC 1 cut(s) 100
LguI GCTCTTC 1 cut(s) 255
LpnPI CCDG 7 cut(s) 47, 71, 117, 165, 343, 347, 356
Lsp1109I GCAGC 5 cut(s) 19, 119, 180, 278, 351
LweI GCATC 1 cut(s) 438
MaeI CTAG 2 cut(s) 183, 189
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 4 cut(s) 62, 127, 242, 343
MflI RGATCY 1 cut(s) 100
MluCI AATT 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 2 cut(s) 75, 399
Mph1103I ATGCAT 1 cut(s) 431
MslI CAYNNNNRTG 1 cut(s) 288
MspI CCGG 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 67, 76
NdeII GATC 1 cut(s) 100
NlaIII CATG 1 cut(s) 310
NsiI ATGCAT 1 cut(s) 431
NspI RCATGY 1 cut(s) 310
PciI ACATGT 1 cut(s) 306
PciSI GCTCTTC 1 cut(s) 255
PkrI GCNGC 5 cut(s) 9, 109, 195, 268, 341
PscI ACATGT 1 cut(s) 306
PspPI GGNCC 1 cut(s) 443
PstI CTGCAG 2 cut(s) 63, 109
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 2 cut(s) 311, 437
RsaNI GTAC 2 cut(s) 310, 436
RseI CAYNNNNRTG 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 255
SatI GCNGC 5 cut(s) 8, 108, 194, 267, 340
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 443
SbfI CCTGCAGG 1 cut(s) 63
SdaI CCTGCAGG 1 cut(s) 63
SetI ASST 9 cut(s) 29, 66, 112, 203, 217, 250, 271, 441, 492
SfaNI GCATC 1 cut(s) 438
SfcI CTRYAG 3 cut(s) 59, 105, 416
SinI GGWCC 1 cut(s) 443
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 3 cut(s) 113, 392, 403
SmoI CTYRAG 3 cut(s) 113, 392, 403
Sse8387I CCTGCAGG 1 cut(s) 63
Sse9I AATT 1 cut(s) 298
SsiI CCGC 1 cut(s) 159
SspMI CTAG 2 cut(s) 183, 189
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 1 cut(s) 412
TaqI TCGA 3 cut(s) 42, 48, 138
TaqII GACCGA 1 cut(s) 460
TasI AATT 1 cut(s) 298
TatI WGTACW 1 cut(s) 309
TscAI CASTG 1 cut(s) 77
TseI GCWGC 5 cut(s) 7, 107, 193, 266, 339
TspDTI ATGAA 2 cut(s) 263, 480
TspRI CASTG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 443
XceI RCATGY 1 cut(s) 310
XspI CTAG 2 cut(s) 183, 189
Zsp2I ATGCAT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.