Rw1G022960

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
48588359 .. 48593811
5453 bp
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UTR
Exon/CDS
Intron
Rw1G022960.1

Sequence Viewer

Length: 711 bp
ATGTTTTTGCCTAGACCGGTTAAAGAGCTTGATGATGCAGCGGTCAAAGTTCAGAAAGTTTTGTATATCAAACTCGAAGAAACCTTGCAGATCATGCAATGGTGGCTGAGGATGTATGATGGAAACCTTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTGTCATTCTTCGATGTTGAGAAGCCGGAAACCATTGGAAAAGGTTTGTCTAAGGATGAGAAAGCACAAAAGTTAGCTCTTCAACATTGGGTTGAAGCTTACATTGATCCACGCCATCGGTATAGACACAATTTACACATGTACTATGATTTGTGGTTTGAAAGTGAGAGCAGCCAGCCTTTCTTCTACTGGCTGAATGTTGGAGATGGCAAAGAAACAAATCTTGAGATATGCTTGAGGACAGTTCTACAGAGCCAATACATCAAGTACCTTGGACCGAAAGAAAGAAAAGCCTATGAAGTAGTAGTCAAAGACGGCAACTTAATAATATCTCTTGTTAAATTTGGGCACCACCAACATGTCAAATATCACTTTGGAAATGTCTTTATTAAATTTTTGAAATATGAGGAAGAGTTCGGGAAGAGGGAGGGAGGGAGGGAGGGAGGGCGGAGGGAGGGAGGGAGGGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTAATTTGGGGATGAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

28.31

Weight (kDa)

8.92

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 507
AciI CCGC 2 cut(s) 41, 607
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 2 cut(s) 500, 551
AfaI GTAC 2 cut(s) 302, 428
AflIII ACRYGT 2 cut(s) 297, 517
AgeI ACCGGT 1 cut(s) 16
AgsI TTSAA 4 cut(s) 242, 254, 320, 559
AluBI AGCT 4 cut(s) 28, 143, 236, 257
AluI AGCT 4 cut(s) 28, 143, 236, 257
AlwI GGATC 1 cut(s) 260
ApeKI GCWGC 3 cut(s) 38, 140, 330
ApoI RAATTY 2 cut(s) 500, 551
AsiGI ACCGGT 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 434
AvaII GGWCC 1 cut(s) 434
BaeGI GKGCMC 1 cut(s) 510
BanI GGYRCC 1 cut(s) 507
BbvCI CCTCAGC 1 cut(s) 107
BbvI GCAGC 3 cut(s) 50, 152, 342
BccI CCATC 3 cut(s) 113, 282, 359
BceAI ACGGC 1 cut(s) 490
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 2 cut(s) 138, 407
BisI GCNGC 3 cut(s) 39, 141, 331
BlsI GCNGC 3 cut(s) 40, 142, 332
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 1 cut(s) 509
BmsI GCATC 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 107
BpuEI CTTGAG 3 cut(s) 131, 404, 415
BsaJI CCNNGG 1 cut(s) 430
BsaWI WCCGGW 1 cut(s) 16
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 3 cut(s) 117, 220, 705
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 353
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 3 cut(s) 50, 152, 342
BshNI GGYRCC 1 cut(s) 507
BshTI ACCGGT 1 cut(s) 16
BsiSI CCGG 2 cut(s) 17, 185
Bsp1286I GDGCHC 1 cut(s) 510
Bsp143I GATC 2 cut(s) 90, 265
BspACI CCGC 2 cut(s) 41, 607
BspCNI CTCAG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 509
BspMAI CTGCAG 1 cut(s) 142
BspPI GGATC 1 cut(s) 260
BspQI GCTCTTC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 507
BsrDI GCAATG 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 1 cut(s) 353
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 2 cut(s) 90, 265
BssT1I CCWWGG 1 cut(s) 430
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 3 cut(s) 243, 564, 575
BstAPI GCANNNNNTGC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 107, 210
BstF5I GGATG 3 cut(s) 117, 220, 705
BstKTI GATC 2 cut(s) 93, 268
BstMBI GATC 2 cut(s) 90, 265
BstMWI GCNNNNNNNGC 2 cut(s) 94, 103
BstNSI RCATGY 2 cut(s) 301, 521
BstSFI CTRYAG 2 cut(s) 138, 407
BstSLI GKGCMC 1 cut(s) 510
BstV1I GCAGC 3 cut(s) 50, 152, 342
BtsCI GGATG 3 cut(s) 117, 220, 705
Cac8I GCNNGC 1 cut(s) 335
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 434
Csp6I GTAC 2 cut(s) 301, 427
CspAI ACCGGT 1 cut(s) 16
CviAII CATG 3 cut(s) 94, 298, 518
CviQI GTAC 2 cut(s) 301, 427
DdeI CTNAG 2 cut(s) 107, 210
DpnI GATC 2 cut(s) 92, 267
DpnII GATC 2 cut(s) 90, 265
Eam1104I CTCTTC 3 cut(s) 243, 564, 575
EarI CTCTTC 3 cut(s) 243, 564, 575
EciI GGCGGA 1 cut(s) 622
Eco130I CCWWGG 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 434
EcoT14I CCWWGG 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 430
FaeI CATG 3 cut(s) 97, 301, 521
FatI CATG 3 cut(s) 93, 297, 517
Fnu4HI GCNGC 3 cut(s) 39, 141, 331
FokI GGATG 2 cut(s) 124, 227
Fsp4HI GCNGC 3 cut(s) 39, 141, 331
FspBI CTAG 1 cut(s) 12
GluI GCNGC 3 cut(s) 39, 141, 331
HapII CCGG 2 cut(s) 17, 185
Hin1II CATG 3 cut(s) 97, 301, 521
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 1 cut(s) 134
HpaII CCGG 2 cut(s) 17, 185
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 2 cut(s) 383, 577
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 4 cut(s) 38, 88, 97, 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 103
HpyF3I CTNAG 2 cut(s) 107, 210
Hsp92II CATG 3 cut(s) 97, 301, 521
Kzo9I GATC 2 cut(s) 90, 265
LguI GCTCTTC 1 cut(s) 243
LpnPI CCDG 4 cut(s) 30, 198, 334, 347
Lsp1109I GCAGC 3 cut(s) 50, 152, 342
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 12
MalI GATC 2 cut(s) 92, 267
MboI GATC 2 cut(s) 90, 265
MboII GAAGA 6 cut(s) 89, 160, 230, 334, 581, 592
MhlI GDGCHC 1 cut(s) 510
MluCI AATT 5 cut(s) 289, 500, 551, 691, 706
MmeI TCCRAC 1 cut(s) 340
MseI TTAA 5 cut(s) 21, 482, 498, 549, 690
MslI CAYNNNNRTG 1 cut(s) 516
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 2 cut(s) 17, 185
MwoI GCNNNNNNNGC 2 cut(s) 94, 103
NdeII GATC 2 cut(s) 90, 265
NlaIII CATG 3 cut(s) 97, 301, 521
NlaIV GGNNCC 1 cut(s) 509
NspI RCATGY 2 cut(s) 301, 521
PciI ACATGT 2 cut(s) 297, 517
PciSI GCTCTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 134
PinAI ACCGGT 1 cut(s) 16
PkrI GCNGC 3 cut(s) 40, 142, 332
PscI ACATGT 2 cut(s) 297, 517
PspN4I GGNNCC 1 cut(s) 509
PspPI GGNCC 1 cut(s) 434
PstI CTGCAG 1 cut(s) 142
RsaI GTAC 2 cut(s) 302, 428
RsaNI GTAC 2 cut(s) 301, 427
RseI CAYNNNNRTG 1 cut(s) 516
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 5 cut(s) 21, 482, 498, 549, 690
SatI GCNGC 3 cut(s) 39, 141, 331
Sau3AI GATC 2 cut(s) 90, 265
Sau96I GGNCC 1 cut(s) 434
SduI GDGCHC 1 cut(s) 510
SetI ASST 8 cut(s) 30, 86, 129, 145, 205, 238, 259, 432
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 2 cut(s) 138, 407
SinI GGWCC 1 cut(s) 434
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 3 cut(s) 146, 383, 394
SmoI CTYRAG 3 cut(s) 146, 383, 394
Sse9I AATT 5 cut(s) 289, 500, 551, 691, 706
SsiI CCGC 2 cut(s) 41, 607
SspMI CTAG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 2 cut(s) 75, 171
TaqII GACCGA 1 cut(s) 451
TasI AATT 5 cut(s) 289, 500, 551, 691, 706
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 5 cut(s) 21, 482, 498, 549, 690
Tru9I TTAA 5 cut(s) 21, 482, 498, 549, 690
TseI GCWGC 3 cut(s) 38, 140, 330
TspDTI ATGAA 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 2 cut(s) 500, 551
XceI RCATGY 2 cut(s) 301, 521
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.