RchiOBHm_Chr4g0398321

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003468
Physical Location & Seq
Reverse (-)
14847708 .. 14849075
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37050

Sequence Viewer

Length: 495 bp
ATGTTGGATAGGAACCTTTCATTTAAGGAAACGTTGGGGACAGAAGATTGTAGAGGTAAACATCTGTTGAAGCTTAAACCAATGCTGACTTTTGCTCTGTCTCAACCAGATTTTATGTTTTTGCCTAGACTGGTTAAGGAGCTTGATGATGCAGCAGTCAAAGTTCAGAAAGTTTTGTATATCAAACTCAAAGAAACCTTGCAGATCGTGCAGTGGTGGCTGAGGAGGTATGATGGAAACCTTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTGTCATTCTTCGATATTGGAAAATGTTTGTCTAAGGATGAGAAAACACAAAACTTAGCTCTTCAACATTGGCTTGAAGCTATTGATCCACGCCATCGGTATAGACACAATTTACACATGTACTACGAGTTGTGGTTTGAAAGTCAGAGTAGCCAGCTTTCTTCTACTGAAAGAAAAGCCTATGAAGTAGTAGTCAAAGATGGCAACTTAAGCTCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

19.32

Weight (kDa)

8.78

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 32
AclWI GGATC 1 cut(s) 353
AfaI GTAC 1 cut(s) 395
AflII CTTAAG 1 cut(s) 481
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 4 cut(s) 70, 338, 350, 413
AluBI AGCT 7 cut(s) 73, 142, 257, 332, 353, 430, 486
AluI AGCT 7 cut(s) 73, 142, 257, 332, 353, 430, 486
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 353
ApeKI GCWGC 2 cut(s) 152, 254
BbvCI CCTCAGC 1 cut(s) 221
BbvI GCAGC 2 cut(s) 164, 266
BccI CCATC 3 cut(s) 227, 375, 467
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 252
BfrI CTTAAG 1 cut(s) 481
BisI GCNGC 2 cut(s) 153, 255
BlsI GCNGC 2 cut(s) 154, 256
BmiI GGNNCC 1 cut(s) 14
BmsI GCATC 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 2 cut(s) 164, 266
BsgI GTGCAG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 52
Bsp143I GATC 2 cut(s) 204, 358
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 14
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 1 cut(s) 353
BspQI GCTCTTC 1 cut(s) 339
BspTI CTTAAG 1 cut(s) 481
BsrI ACTGG 1 cut(s) 135
BssMI GATC 2 cut(s) 204, 358
Bst6I CTCTTC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 481
BstAPI GCANNNNNTGC 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 428
BstDEI CTNAG 3 cut(s) 221, 306, 328
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 2 cut(s) 207, 361
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 2 cut(s) 204, 358
BstMWI GCNNNNNNNGC 3 cut(s) 208, 217, 483
BstNSI RCATGY 1 cut(s) 394
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 2 cut(s) 164, 266
BtsCI GGATG 1 cut(s) 316
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 428
Csp6I GTAC 1 cut(s) 394
CviAII CATG 1 cut(s) 391
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 3 cut(s) 221, 306, 328
DpnI GATC 2 cut(s) 206, 360
DpnII GATC 2 cut(s) 204, 358
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
FaeI CATG 1 cut(s) 394
FaiI YATR 7 cut(s) 116, 180, 231, 375, 392, 456, 490
FaqI GGGAC 1 cut(s) 52
FatI CATG 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 153, 255
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 153, 255
FspBI CTAG 1 cut(s) 126
GluI GCNGC 2 cut(s) 153, 255
Hin1II CATG 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 168, 420
Hpy8I GTNNAC 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 4 cut(s) 152, 202, 211, 254
HpyF10VI GCNNNNNNNGC 3 cut(s) 208, 217, 483
HpyF3I CTNAG 3 cut(s) 221, 306, 328
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 1 cut(s) 394
Kzo9I GATC 2 cut(s) 204, 358
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 3 cut(s) 116, 120, 440
Lsp1109I GCAGC 2 cut(s) 164, 266
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 32
MalI GATC 2 cut(s) 206, 360
MboI GATC 2 cut(s) 204, 358
MboII GAAGA 4 cut(s) 56, 274, 326, 426
MluCI AATT 1 cut(s) 382
MnlI CCTC 3 cut(s) 47, 216, 219
MseI TTAA 4 cut(s) 24, 75, 135, 482
MspCI CTTAAG 1 cut(s) 481
MwoI GCNNNNNNNGC 3 cut(s) 208, 217, 483
NdeII GATC 2 cut(s) 204, 358
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 1 cut(s) 14
NspI RCATGY 1 cut(s) 394
PciI ACATGT 1 cut(s) 390
PciSI GCTCTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 2 cut(s) 154, 256
PscI ACATGT 1 cut(s) 390
Psp1406I AACGTT 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 256
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 4 cut(s) 24, 75, 135, 482
SatI GCNGC 2 cut(s) 153, 255
Sau3AI GATC 2 cut(s) 204, 358
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 1 cut(s) 252
SmlI CTYRAG 2 cut(s) 260, 481
SmoI CTYRAG 2 cut(s) 260, 481
Sse9I AATT 1 cut(s) 382
SspMI CTAG 1 cut(s) 126
TaiI ACGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 285
TasI AATT 1 cut(s) 382
TatI WGTACW 1 cut(s) 393
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 4 cut(s) 24, 75, 135, 482
Tru9I TTAA 4 cut(s) 24, 75, 135, 482
TscAI CASTG 1 cut(s) 218
TseI GCWGC 2 cut(s) 152, 254
TspDTI ATGAA 2 cut(s) 9, 471
TspRI CASTG 1 cut(s) 218
Vha464I CTTAAG 1 cut(s) 481
XceI RCATGY 1 cut(s) 394
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.