RchiOBHm_Chr5g0053581

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
55985395 .. 55986046
652 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33086

Sequence Viewer

Length: 270 bp
ATGTTGGATAGGAACCTTTCATTTAAGGAAACGTTGGGGACAGAAGATTGTAGAGGTAAAAATCTGTTGGAGCTTAAACCAATGCTGACTTTTGCTCTGTCTCAACTGGATTTTATGTTTTTGCCTAGACTGGTTAAGGAGCTTCATGATGCAGCAGTCAAAGTTCAGAAAGTTTTGTATATCAAACTCGAAGAAACCTTGCAGATCGTGCAGTGGTGGCTGAGGAGGTATGGTAGTTATTTTGTTACATGCTTAATGGAAACCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.61

Weight (kDa)

7.76

Isoelectric Point (pI)

24.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 32
AluBI AGCT 2 cut(s) 73, 142
AluI AGCT 2 cut(s) 73, 142
Alw26I GTCTC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 126
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 14
BmsI GCATC 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bse1I ACTGG 2 cut(s) 111, 135
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 2 cut(s) 111, 135
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 213
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 14
BsrI ACTGG 2 cut(s) 111, 135
BssMI GATC 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 221
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 2 cut(s) 208, 217
BstNSI RCATGY 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 164
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 218
CciI TCATGA 1 cut(s) 145
CviAII CATG 2 cut(s) 146, 249
CviJI RGCY 3 cut(s) 73, 142, 220
CviKI_1 RGCY 3 cut(s) 73, 142, 220
DdeI CTNAG 1 cut(s) 221
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
FaeI CATG 2 cut(s) 149, 252
FaiI YATR 5 cut(s) 116, 147, 180, 231, 250
FaqI GGGAC 1 cut(s) 52
FatI CATG 2 cut(s) 145, 248
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 153
Hin1II CATG 2 cut(s) 149, 252
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 152, 202, 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 217
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 2 cut(s) 149, 252
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 2 cut(s) 70, 139
LpnPI CCDG 2 cut(s) 92, 116
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 2 cut(s) 56, 203
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 3 cut(s) 47, 216, 219
MseI TTAA 4 cut(s) 24, 75, 135, 254
MwoI GCNNNNNNNGC 2 cut(s) 208, 217
NdeII GATC 1 cut(s) 204
NlaIII CATG 2 cut(s) 149, 252
NlaIV GGNNCC 1 cut(s) 14
NspI RCATGY 1 cut(s) 252
PagI TCATGA 1 cut(s) 145
PkrI GCNGC 1 cut(s) 154
Psp1406I AACGTT 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 14
SaqAI TTAA 4 cut(s) 24, 75, 135, 254
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 204
SetI ASST 8 cut(s) 18, 35, 58, 75, 144, 200, 230, 266
SfaNI GCATC 1 cut(s) 139
SgeI CNNG 8 cut(s) 119, 138, 143, 158, 200, 211, 220, 261
SspMI CTAG 1 cut(s) 126
TaiI ACGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 189
Tru1I TTAA 4 cut(s) 24, 75, 135, 254
Tru9I TTAA 4 cut(s) 24, 75, 135, 254
TscAI CASTG 1 cut(s) 218
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 9, 134
TspRI CASTG 1 cut(s) 218
XceI RCATGY 1 cut(s) 252
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.