RchiOBHm_Chr6g0258801

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
14139236 .. 14143050
3815 bp
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UTR
Exon/CDS
Intron
PRQ23205

Sequence Viewer

Length: 231 bp
ATGTACTACGATTTGTGGTTTGAAAGTGAGAGCAGCCAGCCTTTCTTCTACTGGCTGGATGTTGGAGATGGCAAAGAAACAAATCTTGAGATATGCTCGAGGACAGTTCTACAGAGCCAATGCATCAAGTACCTTGGACCGGATGGTTTCTTATCTACTGTTGGGACCTTGAAATGGGTAAACCATGTCATTCTCTTATCTCAGGTGCTGGTGGCATTCAAGCTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.76

Weight (kDa)

4.75

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 5, 131
AfiI CCNNNNNNNGG 2 cut(s) 139, 174
AgsI TTSAA 3 cut(s) 23, 172, 220
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
AlwNI CAGNNNCTG 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 137, 165
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 2 cut(s) 137, 165
BbvI GCAGC 1 cut(s) 45
BccI CCATC 2 cut(s) 62, 137
BfmI CTRYAG 1 cut(s) 110
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme18I GGWCC 2 cut(s) 137, 165
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 137, 165
BmiI GGNNCC 1 cut(s) 166
BmsI GCATC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 80, 112
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 174
Bse1I ACTGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 2 cut(s) 64, 148
BseLI CCNNNNNNNGG 2 cut(s) 139, 174
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 2 cut(s) 139, 174
BsmFI GGGAC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 214
BspHI TCATGA 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 166
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 106, 160
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 64, 148
BstSFI CTRYAG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 45
BtsCI GGATG 2 cut(s) 64, 148
Cac8I GCNNGC 1 cut(s) 38
CaiI CAGNNNCTG 1 cut(s) 208
CciI TCATGA 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 137, 165
Csp6I GTAC 2 cut(s) 4, 130
CviAII CATG 2 cut(s) 185, 228
CviJI RGCY 5 cut(s) 36, 40, 55, 117, 223
CviKI_1 RGCY 5 cut(s) 36, 40, 55, 117, 223
CviQI GTAC 2 cut(s) 4, 130
DdeI CTNAG 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 133
Eco47I GGWCC 2 cut(s) 137, 165
Eco88I CYCGRG 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 2 cut(s) 188, 231
FaiI YATR 3 cut(s) 94, 186, 229
FaqI GGGAC 1 cut(s) 178
FatI CATG 2 cut(s) 184, 227
Fnu4HI GCNGC 1 cut(s) 34
FokI GGATG 2 cut(s) 71, 155
Fsp4HI GCNGC 1 cut(s) 34
GluI GCNGC 1 cut(s) 34
HapII CCGG 1 cut(s) 140
Hin1II CATG 2 cut(s) 188, 231
HpaII CCGG 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 181
Hpy188III TCNNGA 2 cut(s) 86, 228
Hpy8I GTNNAC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 106, 160
HpyCH4V TGCA 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 201
Hsp92II CATG 2 cut(s) 188, 231
LpnPI CCDG 6 cut(s) 37, 41, 50, 153, 188, 194
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 1 cut(s) 132
MboII GAAGA 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 1 cut(s) 93
Mph1103I ATGCAT 1 cut(s) 125
MspI CCGG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 215
NlaIII CATG 2 cut(s) 188, 231
NlaIV GGNNCC 1 cut(s) 166
NsiI ATGCAT 1 cut(s) 125
PaeR7I CTCGAG 1 cut(s) 97
PagI TCATGA 1 cut(s) 227
PctI GAATGC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 35
PpuMI RGGWCCY 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 2 cut(s) 137, 165
PspPPI RGGWCCY 1 cut(s) 165
PspXI VCTCGAGB 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 208
RsaI GTAC 2 cut(s) 5, 131
RsaNI GTAC 2 cut(s) 4, 130
SatI GCNGC 1 cut(s) 34
Sau96I GGNCC 2 cut(s) 137, 165
SetI ASST 4 cut(s) 135, 170, 207, 225
SfaNI GCATC 1 cut(s) 132
SfcI CTRYAG 1 cut(s) 110
Sfr274I CTCGAG 1 cut(s) 97
SinI GGWCC 2 cut(s) 137, 165
SlaI CTCGAG 1 cut(s) 97
SmlI CTYRAG 2 cut(s) 86, 97
SmoI CTYRAG 2 cut(s) 86, 97
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 2 cut(s) 106, 160
TaqI TCGA 1 cut(s) 98
TatI WGTACW 1 cut(s) 3
TseI GCWGC 1 cut(s) 33
VpaK11BI GGWCC 2 cut(s) 137, 165
XhoI CTCGAG 1 cut(s) 97
Zsp2I ATGCAT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.