Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003468

Physical Location & Seq

Genomic Coordinates Forward (+)

64976613 .. 64979109

Gene Structure 2497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G041590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTTGGATAGGAACCTAGGTAAAAATCTGTTGAAGCTTAAACCAATGCTGACTTTTGCTCTGTCTCAACTGGATTTTATGTTTTTGCCTAGACCGGTTAAGGAGCTTGATGATGCAGCAGTCAAAGTTCAAAAAATTTTGTATATCAAACTCGAAGAAACCTTGCAGATCGTGCAGTGTTGGCTGAGGAGGTATGATGGAAACCTTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTGTCATTCTTCGATGTTGAGAAGCTGGAAATCATTGGAAAAGGTTTGTCTAAGGATGAGAAAGCACAAAAGTTAGCTCTTCAACATTGGCTTGAAGCTATTGATCCACGCCATCGGTATAGACACAATTTACACATGTACTACTACTATTTGTGGTTTGAAAGTCAGACCAGCCAGCTTTCTTCTACTGGTAAGCTGAATGTTGGAGATGGCAAGGAAACAAATCTTGATCTATGCTTGAGGACAGTTCTACAGAGCCAATGCATCAAGTACCTTGGACCGAAAGAAAGAAAAGCCTATGAAGTAGTAGTCAAAGATGGCAACTTAATTTCTCCAGAGTTTGGCAATTACCACAACTTTTTTGTTTTCTGGAATAGAGGCTGTATCAGTTTTACCTACATTGTTTATGCTGGTGGCATTCAAGCTCTCATGAAAAGCAATGAAAGAAAATTAGCCGAAGAAGATGGGTCAATACTGATGGTCTCTGAAATCCCTTACACCATCATCAGGGCTGGTTTGTTACAAAAACTCTCCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

29.8

Weight (kDa)

8.86

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08130
rosa_chinensis	RchiOBHm_Chr4g0393901 RchiOBHm_Chr4g0398321 RchiOBHm_Chr5g0053561 RchiOBHm_Chr5g0053581 RchiOBHm_Chr5g0053601 RchiOBHm_Chr6g0258141 RchiOBHm_Chr6g0258771 RchiOBHm_Chr6g0258791 RchiOBHm_Chr6g0258801
rosa_laevigata	RLG00000012857 RLG00000014120 RLG00000033861
rosa_multiflora	Rmu_sc0002036.1_g000007 Rmu_sc0005240.1_g000006 Rmu_ssc0000432.1_g000109
rosa_roxburghii	Rroxscaffold_1G00054950 Rroxscaffold_3G00228900 Rroxscaffold_4G00282600
rosa_rugosa	Rorug06G0348800
rosa_samantha	Rh1CG128400 Rh1DG140700 Rh3AG045400 Rh3CG136700 Rh3CG369500 Rh4AG078100 Rh5AG351900 Rh5AG352000 Rh5AG352100 Rh5AG466000 Rh5CG572800 Rh6AG011500 Rh6CG043300 Rh6CG248800
rosa_wichuraiana	Rw1G022960 Rw7G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	578
AclWI	GGATC	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	135
AcvI	CACGTG	1 cut(s)	774
AfaI	GTAC	2 cut(s)	377, 509
AfiI	CCNNNNNNNGG	2 cut(s)	578, 744
AflIII	ACRYGT	1 cut(s)	372
AgeI	ACCGGT	1 cut(s)	94
AgsI	TTSAA	6 cut(s)	34, 131, 320, 332, 398, 659
AluBI	AGCT	9 cut(s)	37, 106, 221, 262, 314, 335, 415, 433, 662
AluI	AGCT	9 cut(s)	37, 106, 221, 262, 314, 335, 415, 433, 662
Alw26I	GTCTC	2 cut(s)	69, 724
AlwI	GGATC	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	116, 218
ApoI	RAATTY	1 cut(s)	135
AsiGI	ACCGGT	1 cut(s)	94
AspA2I	CCTAGG	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	515
AvrII	CCTAGG	1 cut(s)	16
BbrPI	CACGTG	1 cut(s)	774
BbvCI	CCTCAGC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	128, 230
BccI	CCATC	7 cut(s)	191, 357, 440, 548, 695, 709, 746
BcoDI	GTCTC	2 cut(s)	69, 724
BfaI	CTAG	2 cut(s)	17, 90
BfmI	CTRYAG	2 cut(s)	216, 488
BisI	GCNGC	2 cut(s)	117, 219
BlnI	CCTAGG	1 cut(s)	16
BlsI	GCNGC	2 cut(s)	118, 220
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	1 cut(s)	14
BmsI	GCATC	2 cut(s)	103, 510
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	185
BpuEI	CTTGAG	2 cut(s)	209, 496
BsaAI	YACGTR	1 cut(s)	774
BsaI	GGTCTC	1 cut(s)	724
BsaJI	CCNNGG	2 cut(s)	16, 511
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	578, 744
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	75, 430
Bse3DI	GCAATG	1 cut(s)	682
BseDI	CCNNGG	2 cut(s)	16, 511
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	578, 744
BseMI	GCAATG	1 cut(s)	682
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	75, 430
BseRI	GAGGAG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	128, 230
BsgI	GTGCAG	1 cut(s)	194
BshTI	ACCGGT	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	578, 744
BsmAI	GTCTC	2 cut(s)	69, 724
BsmI	GAATGC	1 cut(s)	654
Bso31I	GGTCTC	1 cut(s)	724
Bsp143I	GATC	3 cut(s)	168, 340, 466
BspCNI	CTCAG	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	666
BspLI	GGNNCC	1 cut(s)	14
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	1 cut(s)	335
BspQI	GCTCTTC	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	724
BsrDI	GCAATG	1 cut(s)	682
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	75, 430
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	16, 511
BssMI	GATC	3 cut(s)	168, 340, 466
BssT1I	CCWWGG	2 cut(s)	16, 511
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstBAI	YACGTR	1 cut(s)	774
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	2 cut(s)	185, 288
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	3 cut(s)	171, 343, 469
BstMAI	GTCTC	2 cut(s)	69, 724
BstMBI	GATC	3 cut(s)	168, 340, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 181
BstNSI	RCATGY	1 cut(s)	376
BstSFI	CTRYAG	2 cut(s)	216, 488
BstV1I	GCAGC	2 cut(s)	128, 230
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	413
CciI	TCATGA	1 cut(s)	666
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	515
Csp6I	GTAC	2 cut(s)	376, 508
CspAI	ACCGGT	1 cut(s)	94
CviAII	CATG	2 cut(s)	373, 667
CviQI	GTAC	2 cut(s)	376, 508
DdeI	CTNAG	2 cut(s)	185, 288
DpnI	GATC	3 cut(s)	170, 342, 468
DpnII	GATC	3 cut(s)	168, 340, 466
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	16, 511
Eco31I	GGTCTC	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	515
Eco72I	CACGTG	1 cut(s)	774
EcoT14I	CCWWGG	2 cut(s)	16, 511
EcoT22I	ATGCAT	1 cut(s)	503
ErhI	CCWWGG	2 cut(s)	16, 511
FaeI	CATG	2 cut(s)	376, 670
FaiI	YATR	9 cut(s)	80, 144, 195, 357, 374, 472, 537, 645, 668
FatI	CATG	2 cut(s)	372, 666
Fnu4HI	GCNGC	2 cut(s)	117, 219
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	2 cut(s)	117, 219
FspBI	CTAG	2 cut(s)	17, 90
GluI	GCNGC	2 cut(s)	117, 219
GsuI	CTGGAG	1 cut(s)	555
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	2 cut(s)	376, 670
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	1 cut(s)	95
Hpy188I	TCNGA	2 cut(s)	405, 724
Hpy188III	TCNNGA	4 cut(s)	464, 572, 607, 667
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	1 cut(s)	773
HpyCH4V	TGCA	5 cut(s)	116, 166, 175, 218, 501
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 181
HpyF3I	CTNAG	2 cut(s)	185, 288
HpySE526I	ACGT	1 cut(s)	773
Hsp92II	CATG	2 cut(s)	376, 670
Kzo9I	GATC	3 cut(s)	168, 340, 466
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	2 cut(s)	128, 230
LweI	GCATC	2 cut(s)	103, 510
MaeI	CTAG	2 cut(s)	17, 90
MaeII	ACGT	1 cut(s)	773
MaeIII	GTNAC	1 cut(s)	756
MalI	GATC	3 cut(s)	170, 342, 468
MboI	GATC	3 cut(s)	168, 340, 466
MboII	GAAGA	6 cut(s)	167, 238, 308, 411, 707, 710
MluCI	AATT	5 cut(s)	135, 364, 564, 583, 686
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	4 cut(s)	180, 183, 471, 608
Mph1103I	ATGCAT	1 cut(s)	503
MseI	TTAA	3 cut(s)	39, 99, 563
MspI	CCGG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	654
MwoI	GCNNNNNNNGC	2 cut(s)	172, 181
NdeII	GATC	3 cut(s)	168, 340, 466
NlaIII	CATG	2 cut(s)	376, 670
NlaIV	GGNNCC	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	503
NspI	RCATGY	1 cut(s)	376
PagI	TCATGA	1 cut(s)	666
PciI	ACATGT	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	321
PctI	GAATGC	1 cut(s)	654
PfeI	GAWTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	578
PinAI	ACCGGT	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	118, 220
PmaCI	CACGTG	1 cut(s)	774
PmlI	CACGTG	1 cut(s)	774
Ppu21I	YACGTR	1 cut(s)	774
PscI	ACATGT	1 cut(s)	372
PspCI	CACGTG	1 cut(s)	774
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	515
PstI	CTGCAG	1 cut(s)	220
RsaI	GTAC	2 cut(s)	377, 509
RsaNI	GTAC	2 cut(s)	376, 508
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	39, 99, 563
SatI	GCNGC	2 cut(s)	117, 219
Sau3AI	GATC	3 cut(s)	168, 340, 466
Sau96I	GGNCC	1 cut(s)	515
SfaNI	GCATC	2 cut(s)	103, 510
SfcI	CTRYAG	2 cut(s)	216, 488
SinI	GGWCC	1 cut(s)	515
SmlI	CTYRAG	2 cut(s)	224, 475
SmoI	CTYRAG	2 cut(s)	224, 475
Sse9I	AATT	5 cut(s)	135, 364, 564, 583, 686
SspMI	CTAG	2 cut(s)	17, 90
StyI	CCWWGG	2 cut(s)	16, 511
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	1 cut(s)	776
TaqI	TCGA	2 cut(s)	153, 249
TaqII	GACCGA	1 cut(s)	532
TasI	AATT	5 cut(s)	135, 364, 564, 583, 686
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	3 cut(s)	39, 99, 563
Tru9I	TTAA	3 cut(s)	39, 99, 563
TscAI	CASTG	1 cut(s)	182
TseI	GCWGC	2 cut(s)	116, 218
TspDTI	ATGAA	3 cut(s)	552, 683, 693
TspRI	CASTG	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	135
XceI	RCATGY	1 cut(s)	376
XmaJI	CCTAGG	1 cut(s)	16
XspI	CTAG	2 cut(s)	17, 90
Zsp2I	ATGCAT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.