Rroxscaffold_3G00228900

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
13332197 .. 13337267
5071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228900.1

Sequence Viewer

Length: 426 bp
ATGTTGAAAAGCTGGAAATCGCCTCTTTGTAGTAGGCAAGGGCTAGGACTAGGCTGCGAAGAGCAGCCAGCTTTCTTCTACTGGCTGAATGTTGGAGATGGCAAGGAAACAAATCTTGAGCTATGCTTGAGGACAGTTCTACAGAGCCAATGCATCAAGTACCTTGGACCGAAAGAAAGAAAAGCCTATGAAGTAGATGGTTGCTCATCTAATGTTGGGACCTTGAAATGGGTAAACCATGTCATTCTCTTATCTCAGGTGCCTCTCTCTCTTCCTCTCAGTGTTAGAAACATCACCACTGTTGAAACTGAATTTGAACAACAATGGGAGATGGTAGGGCGGAAGAATGGAAAAATGCGATTCACAATGGTGAACATGTTTGGGGTTAGCAGACTGTTGTTCATGTTCACTATTTTAGCACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

16.11

Weight (kDa)

8.88

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 259
AciI CCGC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 311
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 228
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 4 cut(s) 7, 226, 305, 317
AleI CACNNNNGTG 1 cut(s) 368
AluBI AGCT 3 cut(s) 12, 71, 121
AluI AGCT 3 cut(s) 12, 71, 121
ApeKI GCWGC 2 cut(s) 54, 64
ApoI RAATTY 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 167, 219
AsuHPI GGTGA 2 cut(s) 286, 382
AvaII GGWCC 2 cut(s) 167, 219
BanI GGYRCC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 41, 76
BccI CCATC 3 cut(s) 92, 191, 325
BfaI CTAG 2 cut(s) 44, 50
BfmI CTRYAG 1 cut(s) 140
BisI GCNGC 2 cut(s) 55, 65
BlsI GCNGC 2 cut(s) 56, 66
Bme18I GGWCC 2 cut(s) 167, 219
BmgT120I GGNCC 2 cut(s) 167, 219
BmiI GGNNCC 2 cut(s) 220, 261
BmsI GCATC 1 cut(s) 162
BpuEI CTTGAG 2 cut(s) 137, 148
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMII CTCAG 2 cut(s) 269, 292
BseNI ACTGG 1 cut(s) 86
BseXI GCAGC 2 cut(s) 41, 76
BshNI GGYRCC 1 cut(s) 259
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 232
BspACI CCGC 1 cut(s) 340
BspCNI CTCAG 2 cut(s) 268, 291
BspLI GGNNCC 2 cut(s) 220, 261
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 259
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 163
Bst4CI ACNGT 4 cut(s) 136, 301, 396, 423
Bst6I CTCTTC 2 cut(s) 54, 276
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 255, 278
BstNSI RCATGY 1 cut(s) 379
BstSFI CTRYAG 1 cut(s) 140
BstV1I GCAGC 2 cut(s) 41, 76
BtsIMutI CAGTG 2 cut(s) 286, 297
Cac8I GCNNGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 167, 219
Csp6I GTAC 1 cut(s) 160
CviAII CATG 3 cut(s) 239, 376, 403
CviJI RGCY 9 cut(s) 12, 43, 54, 67, 71, 85, 121, 147, 185
CviKI_1 RGCY 9 cut(s) 12, 43, 54, 67, 71, 85, 121, 147, 185
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 255, 278
Eam1104I CTCTTC 2 cut(s) 54, 276
EarI CTCTTC 2 cut(s) 54, 276
EciI GGCGGA 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 167, 219
EcoO109I RGGNCCY 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 3 cut(s) 242, 379, 406
FaiI YATR 5 cut(s) 124, 189, 240, 377, 404
FaqI GGGAC 1 cut(s) 232
FatI CATG 3 cut(s) 238, 375, 402
Fnu4HI GCNGC 2 cut(s) 55, 65
Fsp4HI GCNGC 2 cut(s) 55, 65
FspBI CTAG 2 cut(s) 44, 50
GluI GCNGC 2 cut(s) 55, 65
Hin1II CATG 3 cut(s) 242, 379, 406
HinfI GANTC 1 cut(s) 360
HphI GGTGA 2 cut(s) 286, 382
Hpy166II GTNNAC 3 cut(s) 235, 373, 408
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 3 cut(s) 235, 373, 408
HpyCH4III ACNGT 4 cut(s) 136, 301, 396, 423
HpyCH4V TGCA 1 cut(s) 153
HpyF3I CTNAG 2 cut(s) 255, 278
Hsp92II CATG 3 cut(s) 242, 379, 406
LguI GCTCTTC 1 cut(s) 54
LpnPI CCDG 3 cut(s) 67, 81, 242
Lsp1109I GCAGC 2 cut(s) 41, 76
LweI GCATC 1 cut(s) 162
MaeI CTAG 2 cut(s) 44, 50
MboII GAAGA 4 cut(s) 67, 71, 263, 355
MluCI AATT 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 4 cut(s) 33, 123, 273, 285
Mph1103I ATGCAT 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 368
NlaIII CATG 3 cut(s) 242, 379, 406
NlaIV GGNNCC 2 cut(s) 220, 261
NsiI ATGCAT 1 cut(s) 155
NspI RCATGY 1 cut(s) 379
OliI CACNNNNGTG 1 cut(s) 368
PciI ACATGT 1 cut(s) 375
PciSI GCTCTTC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 360
PkrI GCNGC 2 cut(s) 56, 66
PpuMI RGGWCCY 1 cut(s) 219
PscI ACATGT 1 cut(s) 375
Psp5II RGGWCCY 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 220, 261
PspPI GGNCC 2 cut(s) 167, 219
PspPPI RGGWCCY 1 cut(s) 219
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 368
SapI GCTCTTC 1 cut(s) 54
SatI GCNGC 2 cut(s) 55, 65
Sau96I GGNCC 2 cut(s) 167, 219
SetI ASST 6 cut(s) 14, 73, 123, 165, 224, 261
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 140
SinI GGWCC 2 cut(s) 167, 219
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 2 cut(s) 116, 127
SmoI CTYRAG 2 cut(s) 116, 127
Sse9I AATT 1 cut(s) 311
SsiI CCGC 1 cut(s) 340
SspMI CTAG 2 cut(s) 44, 50
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 4 cut(s) 136, 301, 396, 423
TaqII GACCGA 1 cut(s) 184
TasI AATT 1 cut(s) 311
TfiI GAWTC 1 cut(s) 360
TscAI CASTG 2 cut(s) 286, 304
TseI GCWGC 2 cut(s) 54, 64
TspDTI ATGAA 2 cut(s) 204, 391
TspRI CASTG 2 cut(s) 286, 304
VpaK11BI GGWCC 2 cut(s) 167, 219
XapI RAATTY 1 cut(s) 311
XceI RCATGY 1 cut(s) 379
XspI CTAG 2 cut(s) 44, 50
Zsp2I ATGCAT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.