Rh5AG351900

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003468
Physical Location & Seq
Forward (+)
58273390 .. 58274641
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG351900.1

Sequence Viewer

Length: 441 bp
ATGTTGGATAGGAACCTTTCATTTAAGGAAACGTTGGGGACAGAAGATTGTAGAGGTAAAAATCTGTTGGAGCTTAAACCAATGCTGACTTTTGCTCTGTCTCAACTGGATTTTATGTTTTTGCCTAGACTGGTTAAGGAGCTTCATGATGCAGCAGTCAAAGTTCAGAAAGTTTTGTATATCAAACTCGAAGAAACCTTGCAGATCGTGCAGTGGTGGCTGAGGAGATGGAAACCTTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTGCTGCGAAGATTGCAAAAGGTTTGTCTAAGGATGAGAAAGCACAAAAGTTAGCTCTTCAACATTGGCTTGAAGCTATTGATCCACGCCATCAATATAGACACAATTTACTCATGTACTACTACTATTTGTGGTTTGAAAGTCAGAGCAGCCAGCTTTCTTCTACTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

17.38

Weight (kDa)

9.13

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 32
AclWI GGATC 1 cut(s) 344
AfaI GTAC 1 cut(s) 386
AgsI TTSAA 3 cut(s) 329, 341, 407
AluBI AGCT 6 cut(s) 73, 142, 252, 323, 344, 424
AluI AGCT 6 cut(s) 73, 142, 252, 323, 344, 424
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 344
ApeKI GCWGC 4 cut(s) 152, 249, 272, 417
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
BbvCI CCTCAGC 1 cut(s) 221
BbvI GCAGC 4 cut(s) 164, 259, 261, 429
BccI CCATC 2 cut(s) 222, 366
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 247
BisI GCNGC 4 cut(s) 153, 250, 273, 418
BlsI GCNGC 4 cut(s) 154, 251, 274, 419
BmiI GGNNCC 1 cut(s) 14
BmsI GCATC 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 240
Bse1I ACTGG 3 cut(s) 111, 135, 439
BseGI GGATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 3 cut(s) 111, 135, 439
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 4 cut(s) 164, 259, 261, 429
BsgI GTGCAG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 52
Bsp143I GATC 2 cut(s) 204, 349
BspCNI CTCAG 1 cut(s) 213
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 14
BspMAI CTGCAG 1 cut(s) 251
BspPI GGATC 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 330
BsrI ACTGG 3 cut(s) 111, 135, 439
BssMI GATC 2 cut(s) 204, 349
Bst6I CTCTTC 1 cut(s) 330
BstAPI GCANNNNNTGC 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 422
BstDEI CTNAG 2 cut(s) 221, 297
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 2 cut(s) 207, 352
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 2 cut(s) 204, 349
BstMWI GCNNNNNNNGC 3 cut(s) 208, 217, 281
BstSFI CTRYAG 1 cut(s) 247
BstV1I GCAGC 4 cut(s) 164, 259, 261, 429
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 422
CciI TCATGA 1 cut(s) 145
Csp6I GTAC 1 cut(s) 385
CviAII CATG 2 cut(s) 146, 382
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 221, 297
DpnI GATC 2 cut(s) 206, 351
DpnII GATC 2 cut(s) 204, 349
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
FaeI CATG 2 cut(s) 149, 385
FaiI YATR 5 cut(s) 116, 147, 180, 366, 383
FaqI GGGAC 1 cut(s) 52
FatI CATG 2 cut(s) 145, 381
Fnu4HI GCNGC 4 cut(s) 153, 250, 273, 418
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 4 cut(s) 153, 250, 273, 418
FspBI CTAG 1 cut(s) 126
GluI GCNGC 4 cut(s) 153, 250, 273, 418
Hin1II CATG 2 cut(s) 149, 385
HinfI GANTC 1 cut(s) 243
Hpy188I TCNGA 2 cut(s) 168, 414
Hpy188III TCNNGA 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 5 cut(s) 152, 202, 211, 249, 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 208, 217, 281
HpyF3I CTNAG 2 cut(s) 221, 297
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 2 cut(s) 149, 385
Kzo9I GATC 2 cut(s) 204, 349
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 2 cut(s) 70, 139
LpnPI CCDG 4 cut(s) 92, 116, 420, 434
Lsp1109I GCAGC 4 cut(s) 164, 259, 261, 429
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 32
MalI GATC 2 cut(s) 206, 351
MboI GATC 2 cut(s) 204, 349
MboII GAAGA 5 cut(s) 56, 203, 289, 317, 420
MluCI AATT 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 2 cut(s) 47, 216
MseI TTAA 3 cut(s) 24, 75, 135
MwoI GCNNNNNNNGC 3 cut(s) 208, 217, 281
NdeII GATC 2 cut(s) 204, 349
NlaIII CATG 2 cut(s) 149, 385
NlaIV GGNNCC 1 cut(s) 14
PagI TCATGA 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 243
PkrI GCNGC 4 cut(s) 154, 251, 274, 419
Psp1406I AACGTT 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 251
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 3 cut(s) 24, 75, 135
SatI GCNGC 4 cut(s) 153, 250, 273, 418
Sau3AI GATC 2 cut(s) 204, 349
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 1 cut(s) 373
SspMI CTAG 1 cut(s) 126
TaiI ACGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 189
TasI AATT 1 cut(s) 373
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 3 cut(s) 24, 75, 135
Tru9I TTAA 3 cut(s) 24, 75, 135
TscAI CASTG 1 cut(s) 218
TseI GCWGC 4 cut(s) 152, 249, 272, 417
TspDTI ATGAA 2 cut(s) 9, 134
TspRI CASTG 1 cut(s) 218
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.