Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003468

Physical Location & Seq

Genomic Coordinates Reverse (-)

1215912 .. 1217837

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG011500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCTGCCCAAGAAGCTACCTACTCCTTCTTCAGCTCCCTCCAAAGGCACAAATTCTGCAACGAAGTCTTCTTCCAAGGCGTTCGAAGCTCGTAGGAACCTCCCTTCATCAGATGGAAAGTGTTTTCAAAGGCGACGCCGAGGCGAGCCCGGTGCGCGCTCCGGTGTGAGGCGGCCTGAAATTGCCTCGCCGGTCCAAAATGAGACACGCTGCTGGAAAAGCGACCGCCCCGGTGTTGGAGCGGCTTGTTTGGGCGGAGGCGGCGCTCTAATGCGTCTGGAGCGAGAGGAAGAAGATGACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

10.88

Weight (kDa)

10.13

Isoelectric Point (pI)

89.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08130
rosa_chinensis	RchiOBHm_Chr4g0393901 RchiOBHm_Chr4g0398321 RchiOBHm_Chr5g0053561 RchiOBHm_Chr5g0053581 RchiOBHm_Chr5g0053601 RchiOBHm_Chr6g0258141 RchiOBHm_Chr6g0258771 RchiOBHm_Chr6g0258791 RchiOBHm_Chr6g0258801
rosa_laevigata	RLG00000012857 RLG00000014120 RLG00000033861
rosa_multiflora	Rmu_sc0002036.1_g000007 Rmu_sc0005240.1_g000006 Rmu_ssc0000432.1_g000109
rosa_roxburghii	Rroxscaffold_1G00054950 Rroxscaffold_3G00228900 Rroxscaffold_4G00282600
rosa_rugosa	Rorug06G0348800
rosa_samantha	Rh1CG128400 Rh1DG140700 Rh3AG045400 Rh3CG136700 Rh3CG369500 Rh4AG078100 Rh5AG351900 Rh5AG352000 Rh5AG352100 Rh5AG466000 Rh5CG572800 Rh6AG011500 Rh6CG043300 Rh6CG248800
rosa_wichuraiana	Rw1G022960 Rw7G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	242
AccII	CGCG	1 cut(s)	157
AciI	CCGC	5 cut(s)	172, 226, 242, 255, 261
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	15
AcyI	GRCGYC	1 cut(s)	136
AfiI	CCNNNNNNNGG	3 cut(s)	44, 168, 236
AgsI	TTSAA	1 cut(s)	128
AluBI	AGCT	3 cut(s)	16, 35, 89
AluI	AGCT	3 cut(s)	16, 35, 89
Alw26I	GTCTC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	4, 210
ApoI	RAATTY	1 cut(s)	52
AspLEI	GCGC	3 cut(s)	157, 159, 266
AspS9I	GGNCC	1 cut(s)	193
AsuC2I	CCSGG	2 cut(s)	150, 231
AsuII	TTCGAA	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	107
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BcnI	CCSGG	2 cut(s)	150, 231
BcoDI	GTCTC	1 cut(s)	197
BfoI	RGCGCY	1 cut(s)	267
BisI	GCNGC	5 cut(s)	5, 173, 211, 243, 262
BlsI	GCNGC	5 cut(s)	6, 174, 212, 244, 263
Bme1390I	CCNGG	2 cut(s)	150, 231
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	98
BmrFI	CCNGG	2 cut(s)	150, 231
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	299
Bpu14I	TTCGAA	1 cut(s)	84
BpuMI	CCSGG	2 cut(s)	150, 231
BsaHI	GRCGYC	1 cut(s)	136
BsaJI	CCNNGG	3 cut(s)	75, 139, 229
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 168, 236
Bse118I	RCCGGY	1 cut(s)	190
BseDI	CCNNGG	3 cut(s)	75, 139, 229
BseLI	CCNNNNNNNGG	3 cut(s)	44, 168, 236
BsePI	GCGCGC	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	157
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	175
BsiEI	CGRYCG	1 cut(s)	226
BsiSI	CCGG	4 cut(s)	150, 162, 191, 231
BslI	CCNNNNNNNGG	3 cut(s)	44, 168, 236
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	175
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	150
BspACI	CCGC	5 cut(s)	172, 226, 242, 255, 261
BspANI	GGCC	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	98
BspT104I	TTCGAA	1 cut(s)	84
BsrBI	CCGCTC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	3 cut(s)	75, 139, 229
BssHII	GCGCGC	1 cut(s)	155
BssNI	GRCGYC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	136
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	146, 157
BstFNI	CGCG	1 cut(s)	157
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	3 cut(s)	157, 159, 266
BstMAI	GTCTC	1 cut(s)	197
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	6 cut(s)	13, 86, 154, 219, 261, 280
BstSCI	CCNGG	2 cut(s)	148, 229
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	146, 157
CfoI	GCGC	3 cut(s)	157, 159, 266
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	193
CseI	GACGC	2 cut(s)	144, 263
CviJI	RGCY	6 cut(s)	16, 35, 89, 148, 175, 245
CviKI_1	RGCY	6 cut(s)	16, 35, 89, 148, 175, 245
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	75
Fnu4HI	GCNGC	5 cut(s)	5, 173, 211, 243, 262
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	5 cut(s)	5, 173, 211, 243, 262
GlaI	GCGC	3 cut(s)	156, 158, 265
GluI	GCNGC	5 cut(s)	5, 173, 211, 243, 262
GsuI	CTGGAG	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	4 cut(s)	150, 162, 191, 231
HgaI	GACGC	2 cut(s)	144, 263
HhaI	GCGC	3 cut(s)	157, 159, 266
Hin1I	GRCGYC	1 cut(s)	136
Hin6I	GCGC	3 cut(s)	155, 157, 264
HinP1I	GCGC	3 cut(s)	155, 157, 264
HpaII	CCGG	4 cut(s)	150, 162, 191, 231
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	278
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	2 cut(s)	36, 114
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	6 cut(s)	13, 86, 154, 219, 261, 280
Hsp92I	GRCGYC	1 cut(s)	136
HspAI	GCGC	3 cut(s)	155, 157, 264
LmnI	GCTCC	4 cut(s)	40, 164, 239, 280
LpnPI	CCDG	7 cut(s)	163, 175, 189, 199, 204, 244, 263
Lsp1109I	GCAGC	1 cut(s)	197
MbiI	CCGCTC	1 cut(s)	242
MboII	GAAGA	5 cut(s)	21, 60, 63, 302, 305
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	2 cut(s)	52, 180
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	7 cut(s)	49, 110, 134, 162, 196, 251, 280
MspI	CCGG	4 cut(s)	150, 162, 191, 231
MspR9I	CCNGG	2 cut(s)	150, 231
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	6 cut(s)	13, 86, 154, 219, 261, 280
NciI	CCSGG	2 cut(s)	150, 231
NlaIV	GGNNCC	1 cut(s)	98
NmeAIII	GCCGAG	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	84
PauI	GCGCGC	1 cut(s)	155
PkrI	GCNGC	5 cut(s)	6, 174, 212, 244, 263
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	193
PteI	GCGCGC	1 cut(s)	155
SatI	GCNGC	5 cut(s)	5, 173, 211, 243, 262
Sau96I	GGNCC	1 cut(s)	193
ScrFI	CCNGG	2 cut(s)	150, 231
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	6 cut(s)	18, 22, 37, 91, 102, 303
SfuI	TTCGAA	1 cut(s)	84
SinI	GGWCC	1 cut(s)	193
Sse9I	AATT	2 cut(s)	52, 180
SsiI	CCGC	5 cut(s)	172, 226, 242, 255, 261
StyD4I	CCNGG	2 cut(s)	148, 229
StyI	CCWWGG	1 cut(s)	75
TaqI	TCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	52, 180
TauI	GCSGC	3 cut(s)	175, 245, 264
TseI	GCWGC	2 cut(s)	4, 210
TspDTI	ATGAA	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.