Rroxscaffold_1G00054950

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
76313076 .. 76313518
443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054950.1

Sequence Viewer

Length: 249 bp
ATGTTGAGATGCCGGAAACCGCCTCTTTGTGGTAGGCAAGGGCTAGGACTAGGCTGCGAAGGTTTGTTCTTTTTCTTATACATACTACTTTCTCATGTTTCCATAGCTTATTGGACATTCATTTCATTAGCTCTTCAACATTGGCTTGAAGCTATTGATCCACGCTATCGGTATAGACACAATTTACACATGTACTACGATTTGTGGTTTGAAAGTCAGAGCAGCCAGCTTTCTTCTACTGGTAAGTGA

Protein Analysis

82

Amino Acids

9.73

Weight (kDa)

8.93

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 20
AclWI GGATC 1 cut(s) 152
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 3 cut(s) 137, 149, 212
AluBI AGCT 4 cut(s) 107, 131, 152, 229
AluI AGCT 4 cut(s) 107, 131, 152, 229
AlwI GGATC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 54, 222
BbvI GCAGC 2 cut(s) 41, 234
BfaI CTAG 2 cut(s) 44, 50
BisI GCNGC 2 cut(s) 55, 223
BlsI GCNGC 2 cut(s) 56, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 41, 234
BsiSI CCGG 1 cut(s) 13
BslI CCNNNNNNNGG 1 cut(s) 29
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 20
BspPI GGATC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 244
BssMI GATC 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 227
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstNSI RCATGY 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 41, 234
Cac8I GCNNGC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 193
CviAII CATG 2 cut(s) 95, 190
CviJI RGCY 8 cut(s) 43, 54, 107, 131, 145, 152, 225, 229
CviKI_1 RGCY 8 cut(s) 43, 54, 107, 131, 145, 152, 225, 229
CviQI GTAC 1 cut(s) 193
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
FaeI CATG 2 cut(s) 98, 193
FaiI YATR 6 cut(s) 79, 83, 96, 104, 174, 191
FatI CATG 2 cut(s) 94, 189
Fnu4HI GCNGC 2 cut(s) 55, 223
Fsp4HI GCNGC 2 cut(s) 55, 223
FspBI CTAG 2 cut(s) 44, 50
GluI GCNGC 2 cut(s) 55, 223
HapII CCGG 1 cut(s) 13
Hin1II CATG 2 cut(s) 98, 193
HpaII CCGG 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 219
HpyAV CCTTC 1 cut(s) 53
Hsp92II CATG 2 cut(s) 98, 193
Kzo9I GATC 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 138
LpnPI CCDG 3 cut(s) 26, 225, 239
Lsp1109I GCAGC 2 cut(s) 41, 234
MaeI CTAG 2 cut(s) 44, 50
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 2 cut(s) 125, 225
MluCI AATT 1 cut(s) 181
MnlI CCTC 1 cut(s) 33
MspI CCGG 1 cut(s) 13
NdeII GATC 1 cut(s) 157
NlaIII CATG 2 cut(s) 98, 193
NspI RCATGY 1 cut(s) 193
PciI ACATGT 1 cut(s) 189
PciSI GCTCTTC 1 cut(s) 138
PkrI GCNGC 2 cut(s) 56, 224
PscI ACATGT 1 cut(s) 189
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SapI GCTCTTC 1 cut(s) 138
SatI GCNGC 2 cut(s) 55, 223
Sau3AI GATC 1 cut(s) 157
SetI ASST 5 cut(s) 64, 109, 133, 154, 231
SgeI CNNG 9 cut(s) 25, 50, 56, 62, 107, 158, 174, 202, 238
Sse9I AATT 1 cut(s) 181
SsiI CCGC 1 cut(s) 20
SspMI CTAG 2 cut(s) 44, 50
TasI AATT 1 cut(s) 181
TatI WGTACW 1 cut(s) 192
TseI GCWGC 2 cut(s) 54, 222
TspDTI ATGAA 2 cut(s) 109, 114
XceI RCATGY 1 cut(s) 193
XspI CTAG 2 cut(s) 44, 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.