Rh1CG128400

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003468
Physical Location & Seq
Reverse (-)
28282232 .. 28291163
8932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG128400.1

Sequence Viewer

Length: 444 bp
ATGCTTCCCAAGAAGCTACCTACTTATTCAGCTCCCTCCGAAGGCACAAATTCTGCAACAAAGTCTTCTTCCAAAGCCTTTGAAGCTCATAGGAACCTCCCTTCATTAGATGGAAAGGAAACGTTGGGGACAGAAGATTGTAGAGGTAAAAATCTGTTGAAGCATAAACCAATGCCGACTTTTGCTCTGTCTCAACCAGATTTTATGTTTTTGCCTAGACCGGTTAAGGAGCTTGATGATGCAGCAGTCAAAGTTCAGAAAGTTTTGTATATCGAACTCGAAGAAACCTTGCAGATTGTGCAGTGGTGGCTGAGGAGGTATGATAATTATTTTGTTACTTGCTTGGATGGTTTCTTATCTACTGTTGGGACCTTGAAATGGGTAGACCATGTCATTCTCTTATCTCAGGTTTTCTTGATTCTATGCGAAAGGGTGTATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.78

Weight (kDa)

7.7

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 384
AclI AACGTT 1 cut(s) 122
AcsI RAATTY 1 cut(s) 49
AfiI CCNNNNNNNGG 2 cut(s) 41, 378
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 3 cut(s) 83, 160, 376
AluBI AGCT 4 cut(s) 16, 32, 86, 232
AluI AGCT 4 cut(s) 16, 32, 86, 232
Alw26I GTCTC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 49
AsiGI ACCGGT 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 369
AvaII GGWCC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 57
BbvCI CCTCAGC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 254
BccI CCATC 2 cut(s) 104, 341
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme18I GGWCC 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 2 cut(s) 95, 370
BmsI GCATC 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 311
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 378
Bse118I RCCGGY 1 cut(s) 220
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 2 cut(s) 41, 378
BseMII CTCAG 2 cut(s) 302, 419
BseRI GAGGAG 1 cut(s) 328
BseXI GCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 320
BshTI ACCGGT 1 cut(s) 220
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 2 cut(s) 142, 382
BslI CCNNNNNNNGG 2 cut(s) 41, 378
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 2 cut(s) 142, 382
BspCNI CTCAG 2 cut(s) 303, 418
BspLI GGNNCC 2 cut(s) 95, 370
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 364
BstAPI GCANNNNNTGC 1 cut(s) 298
BstDEI CTNAG 2 cut(s) 311, 405
BstF5I GGATG 1 cut(s) 352
BstMAI GTCTC 1 cut(s) 195
BstMWI GCNNNNNNNGC 3 cut(s) 83, 298, 307
BstV1I GCAGC 1 cut(s) 254
BstV2I GAAGAC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 1 cut(s) 308
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 369
CspAI ACCGGT 1 cut(s) 220
CviAII CATG 1 cut(s) 389
CviJI RGCY 6 cut(s) 16, 32, 77, 86, 232, 310
CviKI_1 RGCY 6 cut(s) 16, 32, 77, 86, 232, 310
DdeI CTNAG 2 cut(s) 311, 405
Eco47I GGWCC 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 369
FaeI CATG 1 cut(s) 392
FaiI YATR 8 cut(s) 90, 165, 206, 270, 321, 390, 424, 438
FaqI GGGAC 2 cut(s) 142, 382
FatI CATG 1 cut(s) 388
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 1 cut(s) 216
GluI GCNGC 1 cut(s) 243
HapII CCGG 1 cut(s) 221
Hin1II CATG 1 cut(s) 392
HinfI GANTC 1 cut(s) 418
HpaII CCGG 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 2 cut(s) 40, 258
Hpy188III TCNNGA 1 cut(s) 415
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 2 cut(s) 35, 111
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 4 cut(s) 56, 242, 292, 301
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 298, 307
HpyF3I CTNAG 2 cut(s) 311, 405
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 1 cut(s) 392
LmnI GCTCC 2 cut(s) 37, 229
LpnPI CCDG 3 cut(s) 210, 234, 392
Lsp1109I GCAGC 1 cut(s) 254
LweI GCATC 1 cut(s) 229
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 334
MboII GAAGA 4 cut(s) 57, 60, 146, 293
MluCI AATT 2 cut(s) 49, 325
MnlI CCTC 5 cut(s) 46, 107, 137, 306, 309
MseI TTAA 1 cut(s) 225
MspI CCGG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 83, 298, 307
NlaIII CATG 1 cut(s) 392
NlaIV GGNNCC 2 cut(s) 95, 370
PfeI GAWTC 1 cut(s) 418
PflFI GACNNNGTC 1 cut(s) 389
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 1 cut(s) 244
PpuMI RGGWCCY 1 cut(s) 369
Psp1406I AACGTT 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 369
PspN4I GGNNCC 2 cut(s) 95, 370
PspPI GGNCC 1 cut(s) 369
PspPPI RGGWCCY 1 cut(s) 369
PsyI GACNNNGTC 1 cut(s) 389
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 1 cut(s) 243
Sau96I GGNCC 1 cut(s) 369
SfaNI GCATC 1 cut(s) 229
SinI GGWCC 1 cut(s) 369
Sse9I AATT 2 cut(s) 49, 325
SspMI CTAG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 364
TaiI ACGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 273, 279
TasI AATT 2 cut(s) 49, 325
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 308
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 93
TspRI CASTG 1 cut(s) 308
Tth111I GACNNNGTC 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 369
XapI RAATTY 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 384
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.