Rh5AG352100

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003468
Physical Location & Seq
Reverse (-)
58282596 .. 58283847
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG352100.1

Sequence Viewer

Length: 417 bp
ATGTTGGATAGGAACCTTTCATTTAAGGAAACGTTGGGGACAGAAGATTGTAGAGGTAAAAATCTGTTGGAGCTTAAACCAATGCTGACTTTTGCTCTGTCTCAACTGGATTTTATGTTTTTGCCTAGACTGGTTAAGGAGCTTCATGATGCAGCAGTCAAAGTTCAGAAAGTTTTGTATATCAAACTCGAAGAAACCTTGCAGATCGTGCAGTGGTGGCTGAGGAGGTATGGTAGTTATTTTGTTACATGCTTAATTGCAAAAGGTTTGTCTAAGGATGAGAAAGCACAAAAGTTAGCTCTTCAACATTGGCTTGAAGCTATTGATCCACGCCATCAATATAGACACAATTTACTCATGTACTACTACTATTTGTGGTTTGAAAGTCAGAGCAGCCAGCTTTCTTCTACTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

16.42

Weight (kDa)

8.83

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 32
AclWI GGATC 1 cut(s) 320
AfaI GTAC 1 cut(s) 362
AgsI TTSAA 3 cut(s) 305, 317, 383
AluBI AGCT 5 cut(s) 73, 142, 299, 320, 400
AluI AGCT 5 cut(s) 73, 142, 299, 320, 400
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 1 cut(s) 320
ApeKI GCWGC 2 cut(s) 152, 393
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
BbvCI CCTCAGC 1 cut(s) 221
BbvI GCAGC 2 cut(s) 164, 405
BccI CCATC 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 126
BisI GCNGC 2 cut(s) 153, 394
BlsI GCNGC 2 cut(s) 154, 395
BmiI GGNNCC 1 cut(s) 14
BmsI GCATC 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bse1I ACTGG 3 cut(s) 111, 135, 415
BseGI GGATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 3 cut(s) 111, 135, 415
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 2 cut(s) 164, 405
BsgI GTGCAG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 52
Bsp143I GATC 2 cut(s) 204, 325
BspCNI CTCAG 1 cut(s) 213
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 14
BspPI GGATC 1 cut(s) 320
BspQI GCTCTTC 1 cut(s) 306
BsrI ACTGG 3 cut(s) 111, 135, 415
BssMI GATC 2 cut(s) 204, 325
Bst6I CTCTTC 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 398
BstDEI CTNAG 2 cut(s) 221, 273
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 2 cut(s) 207, 328
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 2 cut(s) 204, 325
BstMWI GCNNNNNNNGC 2 cut(s) 208, 217
BstNSI RCATGY 1 cut(s) 252
BstV1I GCAGC 2 cut(s) 164, 405
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 398
CciI TCATGA 1 cut(s) 145
Csp6I GTAC 1 cut(s) 361
CviAII CATG 3 cut(s) 146, 249, 358
CviJI RGCY 9 cut(s) 73, 142, 220, 299, 313, 320, 396, 400, 414
CviKI_1 RGCY 9 cut(s) 73, 142, 220, 299, 313, 320, 396, 400, 414
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 2 cut(s) 221, 273
DpnI GATC 2 cut(s) 206, 327
DpnII GATC 2 cut(s) 204, 325
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
FaeI CATG 3 cut(s) 149, 252, 361
FaiI YATR 7 cut(s) 116, 147, 180, 231, 250, 342, 359
FaqI GGGAC 1 cut(s) 52
FatI CATG 3 cut(s) 145, 248, 357
Fnu4HI GCNGC 2 cut(s) 153, 394
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 153, 394
FspBI CTAG 1 cut(s) 126
GluI GCNGC 2 cut(s) 153, 394
Hin1II CATG 3 cut(s) 149, 252, 361
Hpy188I TCNGA 2 cut(s) 168, 390
Hpy188III TCNNGA 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 4 cut(s) 152, 202, 211, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 217
HpyF3I CTNAG 2 cut(s) 221, 273
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 3 cut(s) 149, 252, 361
Kzo9I GATC 2 cut(s) 204, 325
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 2 cut(s) 70, 139
LpnPI CCDG 4 cut(s) 92, 116, 396, 410
Lsp1109I GCAGC 2 cut(s) 164, 405
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 206, 327
MboI GATC 2 cut(s) 204, 325
MboII GAAGA 4 cut(s) 56, 203, 293, 396
MluCI AATT 2 cut(s) 255, 349
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 3 cut(s) 47, 216, 219
MseI TTAA 4 cut(s) 24, 75, 135, 254
MwoI GCNNNNNNNGC 2 cut(s) 208, 217
NdeII GATC 2 cut(s) 204, 325
NlaIII CATG 3 cut(s) 149, 252, 361
NlaIV GGNNCC 1 cut(s) 14
NspI RCATGY 1 cut(s) 252
PagI TCATGA 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 306
PkrI GCNGC 2 cut(s) 154, 395
Psp1406I AACGTT 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 14
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 4 cut(s) 24, 75, 135, 254
SatI GCNGC 2 cut(s) 153, 394
Sau3AI GATC 2 cut(s) 204, 325
SfaNI GCATC 1 cut(s) 139
Sse9I AATT 2 cut(s) 255, 349
SspMI CTAG 1 cut(s) 126
TaiI ACGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 189
TasI AATT 2 cut(s) 255, 349
TatI WGTACW 1 cut(s) 360
Tru1I TTAA 4 cut(s) 24, 75, 135, 254
Tru9I TTAA 4 cut(s) 24, 75, 135, 254
TscAI CASTG 1 cut(s) 218
TseI GCWGC 2 cut(s) 152, 393
TspDTI ATGAA 2 cut(s) 9, 134
TspRI CASTG 1 cut(s) 218
XceI RCATGY 1 cut(s) 252
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.