Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003468

Physical Location & Seq

Genomic Coordinates Forward (+)

79987569 .. 80004445

Gene Structure 16877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG466000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCCATTCAAGCTGGCCACCTCAATCTCGTCCCTCTCACCAACTCATCTACAACAACAGGAATTGCATACTGTGAGGAGAATAAGGTCGAGAAGTTCCGTGGCAAGATTGGAAAAGGTTTATCTAAGGATGAGAAAGCACAAAAGTTAGCTCTTCAACATTGGCTTGAAGCTATTGATCCACGCCATCGGTATAGACACAATTTACACATGTACTATGATTTGTGGTTTGAAAGTCAGAGCAGCCAGCCTTTCTTCTACTGGCTGGATGTTGGAGATGCAAAGAAACAAATCTTGAGATATGCTCGAGGGCAGTTCTACAGAGCCAATGCATCAAGTACCTTGGACCGAAAGAAAGAAAAGCCTATGAAAGGGCCGAAAGGGTCTCATCTCAGGTCAGTGTACCATGCAGCAGCCTATTTGACATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.53

Weight (kDa)

9.74

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003468)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08130
rosa_chinensis	RchiOBHm_Chr4g0393901 RchiOBHm_Chr4g0398321 RchiOBHm_Chr5g0053561 RchiOBHm_Chr5g0053581 RchiOBHm_Chr5g0053601 RchiOBHm_Chr6g0258141 RchiOBHm_Chr6g0258771 RchiOBHm_Chr6g0258791 RchiOBHm_Chr6g0258801
rosa_laevigata	RLG00000012857 RLG00000014120 RLG00000033861
rosa_multiflora	Rmu_sc0002036.1_g000007 Rmu_sc0005240.1_g000006 Rmu_ssc0000432.1_g000109
rosa_roxburghii	Rroxscaffold_1G00054950 Rroxscaffold_3G00228900 Rroxscaffold_4G00282600
rosa_rugosa	Rorug06G0348800
rosa_samantha	Rh1CG128400 Rh1DG140700 Rh3AG045400 Rh3CG136700 Rh3CG369500 Rh4AG078100 Rh5AG351900 Rh5AG352000 Rh5AG352100 Rh5AG466000 Rh5CG572800 Rh6AG011500 Rh6CG043300 Rh6CG248800
rosa_wichuraiana	Rw1G022960 Rw7G041590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	2 cut(s)	3, 16
AfaI	GTAC	3 cut(s)	215, 340, 404
AfiI	CCNNNNNNNGG	1 cut(s)	371
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	4 cut(s)	11, 158, 170, 233
AluBI	AGCT	3 cut(s)	14, 152, 173
AluI	AGCT	3 cut(s)	14, 152, 173
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	3 cut(s)	3, 16, 374
ApeKI	GCWGC	3 cut(s)	243, 410, 413
AspS9I	GGNCC	2 cut(s)	346, 374
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	346
BalI	TGGCCA	2 cut(s)	5, 18
BbvI	GCAGC	3 cut(s)	255, 422, 425
BccI	CCATC	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	319
BisI	GCNGC	3 cut(s)	244, 411, 414
BlsI	GCNGC	3 cut(s)	245, 412, 415
Bme18I	GGWCC	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	2 cut(s)	346, 374
BmsI	GCATC	2 cut(s)	268, 341
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
BpuEI	CTTGAG	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	100, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	100, 342
BseGI	GGATG	2 cut(s)	136, 274
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	406
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	255, 422, 425
BshFI	GGCC	3 cut(s)	5, 18, 376
BsiHKCI	CYCGRG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	17
BsnI	GGCC	3 cut(s)	5, 18, 376
Bso31I	GGTCTC	1 cut(s)	390
BsoBI	CYCGRG	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	178
BspANI	GGCC	3 cut(s)	5, 18, 376
BspCNI	CTCAG	1 cut(s)	405
BspPI	GGATC	1 cut(s)	173
BspQI	GCTCTTC	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	100, 342
BssMI	GATC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	16, 248
BstDEI	CTNAG	2 cut(s)	126, 392
BstDSI	CCRYGG	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	136, 274
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	3 cut(s)	255, 422, 425
BsuRI	GGCC	3 cut(s)	5, 18, 376
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	136, 274
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	16, 248
Cfr13I	GGNCC	2 cut(s)	346, 374
Csp6I	GTAC	3 cut(s)	214, 339, 403
CviAII	CATG	2 cut(s)	211, 407
CviQI	GTAC	3 cut(s)	214, 339, 403
DdeI	CTNAG	2 cut(s)	126, 392
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
EaeI	YGGCCR	2 cut(s)	3, 16
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	346
Eco88I	CYCGRG	1 cut(s)	306
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	2 cut(s)	214, 410
FaiI	YATR	7 cut(s)	70, 195, 212, 219, 303, 368, 408
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	2 cut(s)	210, 406
Fnu4HI	GCNGC	3 cut(s)	244, 411, 414
FokI	GGATG	2 cut(s)	143, 281
Fsp4HI	GCNGC	3 cut(s)	244, 411, 414
GluI	GCNGC	3 cut(s)	244, 411, 414
HaeIII	GGCC	3 cut(s)	5, 18, 376
Hin1II	CATG	2 cut(s)	214, 410
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	3 cut(s)	91, 295, 429
Hpy8I	GTNNAC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4V	TGCA	4 cut(s)	68, 281, 332, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	126, 392
Hsp92II	CATG	2 cut(s)	214, 410
Kzo9I	GATC	1 cut(s)	178
LguI	GCTCTTC	1 cut(s)	159
LpnPI	CCDG	5 cut(s)	45, 247, 251, 260, 379
Lsp1109I	GCAGC	3 cut(s)	255, 422, 425
LweI	GCATC	2 cut(s)	268, 341
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	2 cut(s)	146, 247
MlsI	TGGCCA	2 cut(s)	5, 18
MluCI	AATT	2 cut(s)	63, 202
MluNI	TGGCCA	2 cut(s)	5, 18
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	4 cut(s)	32, 45, 70, 302
Mox20I	TGGCCA	2 cut(s)	5, 18
Mph1103I	ATGCAT	1 cut(s)	334
MscI	TGGCCA	2 cut(s)	5, 18
Msp20I	TGGCCA	2 cut(s)	5, 18
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	214, 410
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	1 cut(s)	214
PaeR7I	CTCGAG	1 cut(s)	306
PciI	ACATGT	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	159
PkrI	GCNGC	3 cut(s)	245, 412, 415
PscI	ACATGT	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	346, 374
PspXI	VCTCGAGB	1 cut(s)	306
RsaI	GTAC	3 cut(s)	215, 340, 404
RsaNI	GTAC	3 cut(s)	214, 339, 403
SapI	GCTCTTC	1 cut(s)	159
SatI	GCNGC	3 cut(s)	244, 411, 414
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	2 cut(s)	346, 374
SetI	ASST	8 cut(s)	16, 24, 90, 121, 154, 175, 344, 398
SfaNI	GCATC	2 cut(s)	268, 341
SfcI	CTRYAG	1 cut(s)	319
Sfr274I	CTCGAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	346
SlaI	CTCGAG	1 cut(s)	306
SmlI	CTYRAG	2 cut(s)	295, 306
SmoI	CTYRAG	2 cut(s)	295, 306
Sse9I	AATT	2 cut(s)	63, 202
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	74
TaqI	TCGA	2 cut(s)	90, 307
TaqII	GACCGA	1 cut(s)	363
TasI	AATT	2 cut(s)	63, 202
TatI	WGTACW	1 cut(s)	213
TscAI	CASTG	1 cut(s)	405
TseI	GCWGC	3 cut(s)	243, 410, 413
TspDTI	ATGAA	1 cut(s)	383
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	346
XagI	CCTNNNNNAGG	1 cut(s)	369
XceI	RCATGY	1 cut(s)	214
XhoI	CTCGAG	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.