RchiOBHm_Chr6g0258141

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
13539459 .. 13540819
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23147

Sequence Viewer

Length: 699 bp
ATGTTGGATAGGAACCTTTCATTTAAGGAAACGTTGGGGACAGAAGATTGTAGGGGTAAAAATCTGTTGAAGCTTAAACCAATGCTGACTTTTGCTCTGTCTCAACCGGATTTTATGTTTTTGCCTAGACTGGTTAAGGAGCTTGATGATGCAGCAGTCAAAGTTCAGAAAGTTTTGTATATCAAACTCGAAGAAACCTTGCAGATCGTGCAGTGGTGGCTGAGGAGAGTTCTGTGTCATTCTTCAATGTTGAGAAGCCGGAAACCGCCTCTTTGTGGTAGGCAAGGGCTAGGACTAGGCTGCGAAGGTTTGTTCTTTTTCTTATACATACTACTTTCTCATGTTTCCACAGCTTATTGGACATTCATTTCAGTAATAACACTTGCTTTGTTATTTCATATTGGAAAAGGTTTGTCTAAGGATGAGAAAGCACAAAAGTTAGCTCTTCAACATTGGCTTGAAGCTATTGGTCCACGCCATCGGTATAGACACAATTTACACATGTACTACGATTTGTGGTTTGAAAGTCAGAGCAGCCAGCCTTTCTTCTACTGGCTGAATGTTGGAGATGGCAAGGAAACAAATCTTGAGCTATGCTCGAGGACAGTTCTACAGAGCCAATGCATCAAGTACCTTGGACCGAAAGAAAGAAAAGCCTATGAAGTAGTAGTCAAAGATGGCAACTTAAGCTCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

27.04

Weight (kDa)

9.24

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 266
AclI AACGTT 1 cut(s) 32
AfaI GTAC 2 cut(s) 506, 632
AfiI CCNNNNNNNGG 1 cut(s) 275
AflII CTTAAG 1 cut(s) 685
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 5 cut(s) 70, 246, 449, 461, 524
AluBI AGCT 7 cut(s) 73, 142, 353, 443, 464, 592, 690
AluI AGCT 7 cut(s) 73, 142, 353, 443, 464, 592, 690
Alw26I GTCTC 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 598
ApeKI GCWGC 3 cut(s) 152, 300, 534
AspS9I GGNCC 2 cut(s) 470, 638
AvaI CYCGRG 1 cut(s) 598
AvaII GGWCC 2 cut(s) 470, 638
BbvCI CCTCAGC 1 cut(s) 221
BbvI GCAGC 3 cut(s) 164, 287, 546
BccI CCATC 3 cut(s) 486, 563, 671
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 3 cut(s) 126, 290, 296
BfmI CTRYAG 1 cut(s) 611
BfrI CTTAAG 1 cut(s) 685
BisI GCNGC 3 cut(s) 153, 301, 535
BlsI GCNGC 3 cut(s) 154, 302, 536
Bme18I GGWCC 2 cut(s) 470, 638
BmeT110I CYCGRG 1 cut(s) 598
BmgT120I GGNCC 2 cut(s) 470, 638
BmiI GGNNCC 1 cut(s) 14
BmsI GCATC 2 cut(s) 139, 633
BplI GAGNNNNNCTC 2 cut(s) 581, 613
Bpu10I CCTNAGC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 608
BsaJI CCNNGG 1 cut(s) 634
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 135, 557
BseDI CCNNGG 1 cut(s) 634
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 2 cut(s) 135, 557
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 3 cut(s) 164, 287, 546
BsgI GTGCAG 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 598
BsiSI CCGG 2 cut(s) 107, 259
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 598
Bsp143I GATC 1 cut(s) 204
BspACI CCGC 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 14
BspQI GCTCTTC 1 cut(s) 450
BspTI CTTAAG 1 cut(s) 685
BsrI ACTGG 2 cut(s) 135, 557
BssECI CCNNGG 1 cut(s) 634
BssMI GATC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 634
Bst4CI ACNGT 1 cut(s) 607
Bst6I CTCTTC 1 cut(s) 450
BstAFI CTTAAG 1 cut(s) 685
BstAPI GCANNNNNTGC 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 539
BstDEI CTNAG 2 cut(s) 221, 417
BstF5I GGATG 1 cut(s) 427
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 3 cut(s) 208, 217, 687
BstNSI RCATGY 1 cut(s) 505
BstSFI CTRYAG 1 cut(s) 611
BstV1I GCAGC 3 cut(s) 164, 287, 546
BtsCI GGATG 1 cut(s) 427
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 539
Cfr13I GGNCC 2 cut(s) 470, 638
Csp6I GTAC 2 cut(s) 505, 631
CviAII CATG 2 cut(s) 341, 502
CviQI GTAC 2 cut(s) 505, 631
DdeI CTNAG 2 cut(s) 221, 417
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
Eco130I CCWWGG 1 cut(s) 634
Eco47I GGWCC 2 cut(s) 470, 638
Eco88I CYCGRG 1 cut(s) 598
EcoT14I CCWWGG 1 cut(s) 634
EcoT22I ATGCAT 1 cut(s) 626
ErhI CCWWGG 1 cut(s) 634
FaeI CATG 2 cut(s) 344, 505
FaqI GGGAC 1 cut(s) 52
FatI CATG 2 cut(s) 340, 501
Fnu4HI GCNGC 3 cut(s) 153, 301, 535
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 3 cut(s) 153, 301, 535
FspBI CTAG 3 cut(s) 126, 290, 296
GluI GCNGC 3 cut(s) 153, 301, 535
HapII CCGG 2 cut(s) 107, 259
Hin1II CATG 2 cut(s) 344, 505
HindIII AAGCTT 1 cut(s) 71
HpaII CCGG 2 cut(s) 107, 259
Hpy166II GTNNAC 1 cut(s) 473
Hpy188I TCNGA 2 cut(s) 168, 531
Hpy188III TCNNGA 1 cut(s) 587
Hpy8I GTNNAC 1 cut(s) 473
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 607
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 4 cut(s) 152, 202, 211, 624
HpyF10VI GCNNNNNNNGC 3 cut(s) 208, 217, 687
HpyF3I CTNAG 2 cut(s) 221, 417
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 2 cut(s) 344, 505
Kzo9I GATC 1 cut(s) 204
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 5 cut(s) 116, 120, 272, 538, 551
Lsp1109I GCAGC 3 cut(s) 164, 287, 546
LweI GCATC 2 cut(s) 139, 633
MaeI CTAG 3 cut(s) 126, 290, 296
MaeII ACGT 1 cut(s) 32
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 5 cut(s) 56, 203, 234, 437, 538
MluCI AATT 1 cut(s) 493
MmeI TCCRAC 1 cut(s) 544
MnlI CCTC 3 cut(s) 216, 279, 594
Mph1103I ATGCAT 1 cut(s) 626
MseI TTAA 4 cut(s) 24, 75, 135, 686
MspCI CTTAAG 1 cut(s) 685
MspI CCGG 2 cut(s) 107, 259
MwoI GCNNNNNNNGC 3 cut(s) 208, 217, 687
NdeII GATC 1 cut(s) 204
NlaIII CATG 2 cut(s) 344, 505
NlaIV GGNNCC 1 cut(s) 14
NsiI ATGCAT 1 cut(s) 626
NspI RCATGY 1 cut(s) 505
PaeR7I CTCGAG 1 cut(s) 598
PciI ACATGT 1 cut(s) 501
PciSI GCTCTTC 1 cut(s) 450
PkrI GCNGC 3 cut(s) 154, 302, 536
PscI ACATGT 1 cut(s) 501
Psp1406I AACGTT 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 2 cut(s) 470, 638
PspXI VCTCGAGB 1 cut(s) 598
RsaI GTAC 2 cut(s) 506, 632
RsaNI GTAC 2 cut(s) 505, 631
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 4 cut(s) 24, 75, 135, 686
SatI GCNGC 3 cut(s) 153, 301, 535
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 2 cut(s) 470, 638
SfaNI GCATC 2 cut(s) 139, 633
SfcI CTRYAG 1 cut(s) 611
Sfr274I CTCGAG 1 cut(s) 598
SinI GGWCC 2 cut(s) 470, 638
SlaI CTCGAG 1 cut(s) 598
SmlI CTYRAG 3 cut(s) 587, 598, 685
SmoI CTYRAG 3 cut(s) 587, 598, 685
Sse9I AATT 1 cut(s) 493
SsiI CCGC 1 cut(s) 266
SspMI CTAG 3 cut(s) 126, 290, 296
StyI CCWWGG 1 cut(s) 634
TaaI ACNGT 1 cut(s) 607
TaiI ACGT 1 cut(s) 35
TaqI TCGA 2 cut(s) 189, 599
TaqII GACCGA 1 cut(s) 655
TasI AATT 1 cut(s) 493
TatI WGTACW 1 cut(s) 504
Tru1I TTAA 4 cut(s) 24, 75, 135, 686
Tru9I TTAA 4 cut(s) 24, 75, 135, 686
TscAI CASTG 1 cut(s) 218
TseI GCWGC 3 cut(s) 152, 300, 534
TspDTI ATGAA 4 cut(s) 9, 355, 386, 675
TspRI CASTG 1 cut(s) 218
Vha464I CTTAAG 1 cut(s) 685
VpaK11BI GGWCC 2 cut(s) 470, 638
XceI RCATGY 1 cut(s) 505
XhoI CTCGAG 1 cut(s) 598
XspI CTAG 3 cut(s) 126, 290, 296
Zsp2I ATGCAT 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.